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Segunda Escuela de Posgrado Iberoamericana de Astrobiología
Darwin, Oparin y la sopa primitiva: síntesis prebiótica y el origen de la vida
Antonio Lazcano AraujoFacultad de Ciencias, UNAM
MEXICOE-mail: [email protected]
Montevideo 2009
Intellectual & scientific genealogies
Charles Darwin Kliment A. Tymiriazev Alexandr I. Oparin
Closing in on a time frame for the origin of life on Earth
3.54.04.5 3.0
fossil records cooling of the Earthimpact frustrations
The age of the Earth (billions of years ago)
?
3.44.5 4.2 4.2 - 4.0 ~ 4.0 ~3.5 ~2.8 - 2.5
formation of Earth
stable hydrosphere
prebiotic chemistry
pre-RNA worlds
RNA world
DNA/RNA/protein world
oxygen-rich atmosphere
origin of life
RNA/protein world
LCA Apex Formation microstructures
sulfate reducers, anoxygenic phototrophs, methanogens (?)
Becerra, Delaye, Islas & Lazcano (2007) Annu. Rev. Ecol. Evol. Syst. 38: 361
Bada & Lazcano, 2003
A. I. Oparin y sus hermanos J. B. S. Haldane
Heterotrophic origin of life
reducing atmosphere
synthesis of organic compounds& formation of the primitive soup
coacervates
primordial heterotrophs
1) Proust 1807HCN polímero + adenina (?)
2) Wöhler 1828NH4 NCO urea
3) Strecker 1850CH3 CHO + NH3 + HCN alanina
4) Butlerow 1861HCHO azúcares
OH-
OH-
Síntesis abiótica de compuestos orgánicos en el siglo XIX
Garrison et al (1951) Science 114: 416
Reduction of carbon dioxide in aqueous solutions by ionizing radiations
Garrison, W.M., Morrison, D. C., Hamilton, J. G., Benson, A. A. and Calvin, M. (1951) Science 114: 416
Reduction of carbon dioxide in aqueous solutions by ionizing radiations
Delete | Reply | Reply to all | Forward | Bounce | Resume | Save as Back to HistoricalDate Sat, 4 Jun 2005 16:44:15 -0700From "Andrew A. Benson" <[email protected]>To [email protected] Nopales, againPartsMessage SourceSo many thanks for your delightful and informative message, Antonio. I am so fortunate to learn of your familiarity with Nopales and their effects.
Be assured, though, that obtaining Nopal and Nopalitos in the stores is not a problem. Dee brings home several P.E. bags of Nopalitosevery time she goes to El Cajon for her needlepoint classes. They are grown in Valley Center not far from Escondido.I find many articles on the Web, some of them clinical. But none of them revealed any physiological or biochemical mechanisms.
For half a year I was buying Nopalitos in glass jars; but the fresh ones are better.
My colleague in Paris is interested and curious. He is in the top council of Acad. Nationale de Medecine and hopes to understand how they lower blood clucose levels.
Greetings from Dee, too,Andy
Delete | Reply | Reply to all | Forward | Bounce | Resume | Save as Back to Historica
k 25 C
C + 2H2 -> CH4 8 x 108
N2 + 3H2 -> NH3 7 x 105
O2 + 2H2 -> H2 O 4 x 1041
CO2 + 6H2 -> CH4 + 2H2 O 6 x 1015
S + H2 -> H2 S 7 x 1021
k = k (T)
Harold C. Urey’s primitive terrestrial atmosphere
Urey (1952) PNAS 38: 351
A principios de los 1950’s, se creía que:
a) Los organismos se podían clasificar en tres grandes reinos (según Haeckel): microbios, plantas y animales;
b) Los fósiles más antiguos tenían 600 millones de años;
c) El origen de la biósfera había sido un proceso lento de miles de millones de años;
d) Los microbios eran sobre todo gérmenes patógenos;
e) Las proteínas jugaban un papel central en la herencia;
f) Los sistemas planetarios eran muy raros; y
g) La exploración del espacio era muy poco probable
El experimento de Miller de 1953
Mount Redoubt, Alaska, March 22, 2009
Representative cumulative HPLC chromatograms for: (A) classic apparatus design; (B) volcanic apparatus design; (C) silent discharge apparatus design; and (D) an amino acid standard; peak identifications 1-D,L-Asp; 2-L,D-Glu; 3-D,L-Ser; 4-Gly; 5-β-Ala; 6-γABA; 7-D,L-β-AIB; 8-D,L-Ala; 9- D,L-β-ABA; 10-α-AIB; 11-D,L-α-ABA; 12-D,L-Isovaline; 13-D,L-Norleucine. (* are unidentified peaks); and (E) a procedural blank.
Note: identificationswere confirmed by LC-FD/ToF-MS
Types of planetary anoxic atmospheres
Reducing:CH4 , NH3 , N2 , H2 O, H2CO2 , N2 , H2 O, H2CO2 , H2 , H2 O
Neutral: CO2 , N2 , H2 O
Prebiotic organic synthesis in neutral planetary atmospheres
I. amino acid standard
II. CO2 /N2 not sparked
III. CO2 /N2 + CaCO3 , sparked,hydrolyzed with no ascorbate
IV. CO2 /N2 sparked, hydrolyzedwith no ascorbate
V. CO2 /N2 + CaCO3 , sparked, hydrolyzed, ascorbate
(1) DL aspartic acid; (2) DL glutamic acid; (3) DL serine; (4) glycine; (5) β-alanine; (6) DL alanine; (7) α-amino isobutyric acid; (8) DL norleucine (internal standard)
Prebiotic synthesis under reducing and neutral conditions
CH4 , NH3 , H2 , H2 O (Miller, 1953)
CO2 , N2 , H2 O (Cleaves, Chalmers, Lazcano, Miller & Bada, 2008)
1953: Annus mirabilis
Watson & CrickDNA double helix
Sanger & ThompsonSequencing of insulin
Prebiotic synthesis oforganic compounds
Stanley L. Miller
During the first twenty years following the Miller experiment, attempts to understand the origin of life were shaped to a considerable extent,
1) scientifically,
* by the fact that since the late 1940´s, evolutionary biology became an established field of research;
* the unraveling of the details of DNA replication & protein biosynthesis; and
* the development of space programs
2) in socio-political terms, by the atmosphere created by Cold War tensions.
Prebiotic synthesis of adenine*
a) Oró, 1960; b) Ferris & Orgel, 1966
* Did nucleic acids form in the prebiotic soup?
1.Amino acids from Strecker synthesis
2. Purines from HCN polymerization
3. Pyrimidines from cyanoacetylene & urea
4. Sugars from HCHO polymerization
Prebiotic syntheses that work
John Sutherland’s synthesis of pyrimidine ribonucleotides
Szostak 2009
Abiotic synthesis under hydrothermal vent conditions
Mixtures of nickel- and iron sulfides, as well the formation of pyrite (FeS2 ) can catalize the:
i) reduction of carbon monoxide (but not of CO2 )ii) formation of organic compounds and peptide-bondsiii) synthesis of ammonia from nitrogen and hydrogen
FeS + H2 S -> FeS2 + H2FeS + H2S = FeS2 + H2
1) reducing/anoxic atmosphere/ocean environments
2) input in comets and meteorites
3) high-temperature vent chemistry
Prebiotic sources of organic compounds:
Miller & Lazcano 2002
Prebiotic syntheses are quite robust!
organics from space
Bada & Lazcano (2002) Science 296: 1982
Base-pairing is for free!
Orgel, 2004
alkenes acid conditions alcohols
Fe3 C + H2 O alkanes + alkenes1)
2)
From hydrocarbons to amphiphilic compounds
hydrophobic
hydrophilic
Putting everything together…
Mansy et al (2008) Nature 454: 122
a wide array of organic compounds of biochemical significance
many inorganic & organic catalysts
purines & pyrimidines(the potential for template-directed polymerizations)
membrane-forming compounds
The evidence suggests that prior to the origin of life the primitive Earth already had:
DNA
DNA RNA protein
replicative polymers+
catalytic polymers
Can coexistence breed a code?
catalytic polymers
replicative polymers
DNA
DNA RNA protein
replicative polymers+
catalytic polymers
Can coexistence breed a code?
catalytic polymers
replicative polymers
DNA
DNA RNA protein
Mr. Michael Jackson’s putative child: is Lamarckian inheritance feasible?
During early evolutionary stages RNA molecules played a major role in heredity and metabolism
Woese (1967)
Orgel (1968) & Crick (1968)
Bada & Lazcano (2003) Science 300: 745
1924 -
1929 1961
1953
1900
1861
1850
1828
1800 2000
replicative RNA
catalytic RNA
The RNA world hypothesis
plus many other things: amino acids, oligopeptides, lipids, sugars, clays, metallic cations, etc!
RNA world
RNA + proteins
DNA + RNA + proteins
The Aztec pyramid model of the RNA world
la existencia de moléculas de RNA autorreplicativas;
ribozimas con capacidad de interaccionar con aminoácidos;
ribozimas con actividad de peptidil-transferasa;
rutas metabólicas mediadas por ribozimas o, bien,
síntesis prebiótica de ribonucleótidos e intermediariosmetabólicos con residuos de ribonucleótidos.
Si de verdad existió el Mundo de RNA, se puedenhacer una serie de predicciones:
The robustness of the RNA world hypothesis
RNA ribosomal catalyzes peptide-bond formation (Moore & Steitz, 2002)
Self-sustained replication of RNA molecules (Lincoln & Joyce, 2009)
Ribozymes catalyze metabolic reactions (Fusz et al, 2005, Chem. Biol. 12: 941)
Mindell, D. P. (2006) The Evolving World: evolution in everyday life(Harvard University Press, Cambridge)
Evolución
de virus patógenos
1) Los virus no están vivos (tampoco están muertos)
2) Los virus ni fueron los primeros seres vivos ni son primitivos
3) Hay virus en todos los reinos biológicos
4) La mayoría de los virus no son patógenos
Un sistema simple no es necesariamente primitivo
DNA, RNA & proteins
?
RNA + proteins
RNA world
RNA viruses
DNA viruses
retroviruses
Are viruses primordial entities?
?
?
Cells with DNA, RNA & proteins
RNA & protein biosynthesis
RNA world
?
life
tornadoes
milk
droplets
membrane
bilayers
liposomes
and
micelles
viruses
fire
formose
reaction
Junta de Gobierno
SELF-ORGANIZATION
REPLICATION
AUTOPOIESIS
cyanobacteria
prions
swarming
capsidassembly
NATURAL SELECTIONpopulations
ofRNA molecules
Archaea
Eucarya
Bacteria
LCA
hot origin
of
life?
Catalonian
Spanish Rumanian
FrenchProvençal
Italian
LATIN
Catalonian
Spanish Rumanian
FrenchProvençal
Italian
ancient…but certainlynot primitive
Archaea
Eucarya
Bacteria
LCA
Hyperthermophiles are ancient, not primitive --as shown by the way they replicate, express and regulate their genetic information