1
1 Elec Introd The mo cancer ex vivo ment, c in vivo models may re ticity p the def Metho The stu went an based o The ex 3D mo employ model tration face of image. and ou this app the ima an elas modulu mined additio allows the d compu process illustra Result To eva T2w sl 46.7% rigid a after n On m relative after no 93.3±0 Discu We ou intensit MRE. which Refer [1] Koz [2] Dre [3] Cru A M ctrical and Compu duction ost accurate image probability maps o images can be ea change in volume MRI. Biomechan s are assigned arb esult in inaccurate parameters to the p formation maps an ods udy was approved n in vivo pre-op T on transperineal a x vivo post-op pros odel of the prostat y a model-based re onto the field of v algorithm [5] that f the model. Final Rather than defor utside its surface. proach, each voxe age is associated w sticity value (Youn us) that was de by the MRE scan on, this appro the forces that dr deformations to uted on the entire v sing step, we com ates the registration ts aluate registration lices. The results a initially, 78.4% a alignment, and 86 non-rigid registrat mid-gland slices, e 2D area ove on-rigid registratio 0.54%. ssion utlined a method fo ty information and Early experiments is needed in order ences zlowski et al., Ma ew et al., J. Magn. um et al., British Jo Model-Based M Guy N uter Engineering, U BC e-based characteriz that correlate histo asily registered to h and deformation o nical models which itrary and typicall deformation maps prostate and peripr nd, to the best of ou d by the institution 2-weighted (T2w) application of vibr state specimen wa te to be constructe egistration scheme view of the in vivo t translates, scales lly, we employ a n rming the ex vivo . In el of with ng's eter- n. In oach rive be volume, not only a mpute the inverse m n process on a tran performance, we are illustrated in Fi after 6.8% tion. the erlap on is or a model-based d the measured ela s on both syntheti to build cancer di gn. Reson. Imagin Reson. Imaging 3 ournal of Radiolog (a) I (a) Method for Re Nir 1 , Ramin S. Sahe University of Britis C, Canada, 3 Centr zation of prostate opathology with in histology using me of the prostate betw h are deformed in ly constant elastic s. We propose the rostatic tissue. The ur knowledge, has al ethics board an ) MRI scan follow ations to the prost s fixed in 10% bu ed easily. In contr e, in which the ex volume. Next, we and rotates the m novel iterative ela model, the in vivo around the model. mapping and warp nsverse slice of the compared the fina igure 2. Quantitati registration of an asticity to warp the c and clinical data stribution probabi ng 28 (2010) 621-6 32 (2010), 992-996 gy 77 (2004) S140 Initial ) 3D egistration of E ebjavaher 1 , Piotr K sh Columbia, Vanc re de Recherche Bi cancer to date is g n vivo MRI, one ca echanical constrai ween the scans. It a physical manne ity properties that novel use of mag e incorporation of not been reported d a signed consen wed by MRE in a 3 tate. We obtained uffered formalin an rast, the in vivo im vivo model is mat e align the 3D mod model over the volu astic registration a o volumetric imag Therefore, displa p the model onto t e volume. al registered ex viv ively, we found th ex vivo model to e volumetric imag a show promising lity maps. 628. 6. 0-S153. (b) Rigidly aligned (b) Slice 16 Ex Vivo to In Kozlowski 2 , Ralph couver, BC, Canad iomédicale Bichat- generated from mu an use ex vivo MR nts [2], it remains is the goal of this r have been used e t are optimized to gnetic resonance el such elastography d before. nt was obtained pri .0-Tesla system (P the elasticity ima nd scanned in a 7.0 mages contain surr tched to the in vivo del to fit the image ume in order to mi algorithm to comp ge is warped in ord acements of the vo the volume. We im vo model to a mod he relative 3D volu an in vivo T2w M e. To the best of o results. An ongoi [4] Muthupillai et [5] Tsai et al., IEE [6] Modersitzki, O d (c) Warpe (c) Sli Vivo Prostate Sinkus 3 , and Sept da, 2 MRI Research -Beaujon (CRB3), ulti-parametric mag RI scans of the fixe a challenge to reg s work to develop extensively for reg produce a low tar lastography (MRE y data into the regi ior to experiments Philips, The Nethe age using local fre 0-Tesla system (B rounding anatomy o volumetric imag e with respect to tr inimize the intensi pute the residual n der to match the m oxels are propagat mplement our met del constructed fr ume overlap betwe MRI volume with our knowledge, thi ing study will prov t al., Science 269 ( EE Trans. on Med Oxford University ed image ( ice 18 e MRI Using E timiu E. Salcudean h Centre, Universi Paris, France gnetic resonance i ed prostate specim gister ex vivo to in a method for accu gistration of medi arget registration e E) [4] that assigns istration framewor s. A patient schedu erlands). We used equency estimation Bruker, Germany). y and tissue, with ge. As a pre-proce translations, scalin ity variations on th non-rigid mapping model, by minimiz ted through the im thod using a nume rom manual segme een the two model a corresponding M is is the first mode vide further evalu (1995) 1854-1857 d. Imaging 22 (200 y Press (2004). (d) Warped model (d) Slice 20 Elastography n 1 ity of British Colum imaging (MRI) [1] men after radical pr n vivo MRI due to urate registration b cal imaging data [ error. This is not a actual in vivo me rk ensures a realist uled for radical pr a dynamic harmon n (LFE) of the dis High quality ex v which the prostat essing step, we inte ng and rotations. W he regions inside a g between the alig zing global intensi mage in a physical erical scheme bas entation of the pro ls (Dice’s similarit MRE data. The m el-based registratio uation of the meth 7. 03) 137-154. Figure 1. Re Cross-section model (red) o vivo T2w slic (c) the image the prostate i The inverse m model, produ Figure 2. Re (a) Registere (red) and ma in vivo mode (b-d) Selecte the registere on correspon and manual mbia, Vancouver, ]. In order to obtai rostatectomy. Whil unknown misalign between ex vivo an [3]. However, thes always realistic an asurements of elas tic regularization o rostatectomy under nic MRE techniqu splacement image vivo images allow te blends. Thus, w erpolate the ex viv We use a rigid regis and outside the sur gned model and th ity variations insid fashion. As a pos ed on [6]. Figure ostate in the in viv ty coefficient) to b method utilizes bot on method that use od on clinical data egistration process n of the ex vivo 3D overlaid on an in ce. Notice that in e is warped to fit inside the model. map, applied to the uces (d). egistration results. ed ex vivo model anually segmented el (cyan) in 3D. ed cross-sections o ed model overlaid nding T2w slices segmentations. in le n- nd se nd s- of r- ue s. a we vo s- r- he de t- 1 vo be th es a, . D e d of 2568 Proc. Intl. Soc. Mag. Reson. Med. 20 (2012)

A Model-Based Method for Reegistration of Ex Vivo to In ... · [4] Muthupillai et [5] Tsai et al., IEE [6] Modersitzki, O (c) Warpe (c) Sli Vivo Prostate Sinkus3, and Sept a, 2MRI

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Page 1: A Model-Based Method for Reegistration of Ex Vivo to In ... · [4] Muthupillai et [5] Tsai et al., IEE [6] Modersitzki, O (c) Warpe (c) Sli Vivo Prostate Sinkus3, and Sept a, 2MRI

1Elec

IntrodThe mocancer ex vivoment, cin vivomodelsmay reticity pthe def MethoThe stuwent anbased oThe ex3D moemploymodel tration face ofimage. and outhis appthe imaan elasmodulumined additioallows the dcompuprocessillustra ResultTo evaT2w sl46.7% rigid aafter nOn mrelativeafter no93.3±0 DiscuWe ouintensitMRE. which Refer[1] Koz[2] Dre[3] Cru

A M

ctrical and Compu

duction ost accurate imageprobability maps

o images can be eachange in volume MRI. Biomechans are assigned arbesult in inaccurate parameters to the pformation maps an

ods udy was approvedn in vivo pre-op Ton transperineal a

x vivo post-op prosodel of the prostaty a model-based reonto the field of valgorithm [5] that

f the model. FinalRather than defor

utside its surface.proach, each voxeage is associated wsticity value (Younus) that was deby the MRE scan

on, this approthe forces that dr

deformations to uted on the entire vsing step, we com

ates the registration

ts aluate registration lices. The results ainitially, 78.4% a

alignment, and 86non-rigid registrat

mid-gland slices, e 2D area oveon-rigid registratio

0.54%.

ssion utlined a method foty information andEarly experimentsis needed in order

ences zlowski et al., Maew et al., J. Magn.um et al., British Jo

Model-Based MGuy N

uter Engineering, UBC

e-based characterizthat correlate histo

asily registered to hand deformation o

nical models whichitrary and typicalldeformation maps

prostate and periprnd, to the best of ou

d by the institution2-weighted (T2w)

application of vibrstate specimen wate to be constructeegistration schemeview of the in vivot translates, scales lly, we employ a nrming the ex vivo . In el of with ng's

eter-n. In oach rive

be volume, not only a

mpute the inverse mn process on a tran

performance, we are illustrated in Fiafter

6.8% tion.

the erlap on is

for a model-based d the measured elas on both synthetito build cancer di

gn. Reson. ImaginReson. Imaging 3

ournal of Radiolog

(a) I

(a)

Method for ReNir1, Ramin S. SaheUniversity of BritisC, Canada, 3Centr

zation of prostate opathology with inhistology using meof the prostate betwh are deformed in ly constant elastics. We propose therostatic tissue. Theur knowledge, has

al ethics board an) MRI scan followations to the prosts fixed in 10% bued easily. In contre, in which the ex volume. Next, weand rotates the m

novel iterative elamodel, the in vivo

around the model.mapping and warpnsverse slice of the

compared the finaigure 2. Quantitati

registration of an asticity to warp thec and clinical datastribution probabi

ng 28 (2010) 621-632 (2010), 992-996gy 77 (2004) S140

Initial

) 3D

egistration of Eebjavaher1, Piotr Ksh Columbia, Vancre de Recherche Bi

cancer to date is gn vivo MRI, one caechanical constraiween the scans. It a physical manneity properties that novel use of mag

e incorporation of not been reported

d a signed consenwed by MRE in a 3

tate. We obtained uffered formalin anrast, the in vivo imvivo model is mat

e align the 3D modmodel over the voluastic registration ao volumetric imag

Therefore, displap the model onto te volume.

al registered ex vivively, we found th

ex vivo model to e volumetric imaga show promising lity maps.

628. 6. 0-S153.

(b) Rigidly aligned

(b) Slice 16

Ex Vivo to In Kozlowski2, Ralph couver, BC, Canadiomédicale Bichat-

generated from muan use ex vivo MRnts [2], it remainsis the goal of thisr have been used e

t are optimized to gnetic resonance elsuch elastography

d before.

nt was obtained pri.0-Tesla system (Pthe elasticity ima

nd scanned in a 7.0mages contain surrtched to the in vivodel to fit the imageume in order to mialgorithm to compge is warped in ord

acements of the vothe volume. We im

vo model to a modhe relative 3D volu

an in vivo T2w Me. To the best of oresults. An ongoi

[4] Muthupillai et[5] Tsai et al., IEE[6] Modersitzki, O

d (c) Warpe

(c) Sli

Vivo ProstateSinkus3, and Sept

da, 2MRI Research-Beaujon (CRB3),

ulti-parametric magRI scans of the fixe

a challenge to regs work to develop extensively for regproduce a low tar

lastography (MREy data into the regi

ior to experimentsPhilips, The Netheage using local fre0-Tesla system (Brounding anatomyo volumetric image with respect to trinimize the intensipute the residual nder to match the m

oxels are propagatmplement our met

del constructed frume overlap betwe

MRI volume with our knowledge, thiing study will prov

t al., Science 269 (EE Trans. on MedOxford University

ed image (

ice 18

e MRI Using Etimiu E. Salcudeanh Centre, Universi Paris, France

gnetic resonance ied prostate specimgister ex vivo to ina method for accugistration of medi

arget registration eE) [4] that assigns istration framewor

s. A patient scheduerlands). We used equency estimationBruker, Germany).y and tissue, with ge. As a pre-procetranslations, scalinity variations on thnon-rigid mappingmodel, by minimiz

ted through the imthod using a nume

rom manual segmeeen the two model

a corresponding Mis is the first modevide further evalu

(1995) 1854-1857d. Imaging 22 (200y Press (2004).

(d) Warped model

(d) Slice 20

Elastographyn1 ity of British Colum

imaging (MRI) [1]men after radical prn vivo MRI due to urate registration bcal imaging data [

error. This is not aactual in vivo me

rk ensures a realist

uled for radical pra dynamic harmonn (LFE) of the dis High quality ex vwhich the prostat

essing step, we inteng and rotations. Whe regions inside ag between the aligzing global intensi

mage in a physical erical scheme bas

entation of the prols (Dice’s similarit

MRE data. The mel-based registratiouation of the meth

7. 03) 137-154.

Figure 1. ReCross-sectionmodel (red) ovivo T2w slic(c) the imagethe prostate iThe inverse mmodel, produ

Figure 2. Re(a) Registere(red) and main vivo mode(b-d) Selectethe registereon corresponand manual

mbia, Vancouver,

]. In order to obtairostatectomy. Whilunknown misalign

between ex vivo an[3]. However, thesalways realistic anasurements of elastic regularization o

rostatectomy undernic MRE techniqusplacement imagevivo images allow te blends. Thus, werpolate the ex viv

We use a rigid regisand outside the surgned model and thity variations insid

fashion. As a posed on [6]. Figure

ostate in the in vivty coefficient) to b

method utilizes boton method that useod on clinical data

egistration processn of the ex vivo 3Doverlaid on an in ce. Notice that in e is warped to fit inside the model. map, applied to theuces (d).

egistration results.ed ex vivo model anually segmentedel (cyan) in 3D. ed cross-sections oed model overlaid nding T2w slices segmentations.

in le n-nd se nd s-of

r-ue s. a

we vo s-r-

he de

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vo be

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. D

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2568Proc. Intl. Soc. Mag. Reson. Med. 20 (2012)