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Jesus Garcia-Foncillas MD PhD
Director
Liquid Biopsy
Main issues about liquid biopsies
• New paradigm: Precision Medicine
• Heterogeneity & Dynamics
• Surrogate mirror for the tumor
• CTCs in colon cancer
• ctDNA:
– Technical approaches
– Heterogeneity & Dynamics
– Disease course
– Therapy monitoring
Main issues about liquid biopsies
• New paradigm: Precision Medicine
• Heterogeneity & Dynamics
• Surrogate mirror for the tumor
• CTCs in colon cancer
• ctDNA:
– Technical approaches
– Heterogeneity & Dynamics
– Disease course
– Therapy monitoring
Precision Oncology:
Genomics-driven cancer medicine
Main issues about liquid biopsies
• New paradigm: Precision Medicine
• Heterogeneity & Dynamics
• Surrogate mirror for the tumor
• CTCs in colon cancer
• ctDNA:
– Technical approaches
– Heterogeneity & Dynamics
– Disease course
– Therapy monitoring
Main issues about liquid biopsies
• New paradigm: Precision Medicine
• Heterogeneity & Dynamics
• Surrogate mirror for the tumor
• CTCs in colon cancer
• ctDNA:
– Technical approaches
– Heterogeneity & Dynamics
– Disease course
– Therapy monitoring
Main issues about liquid biopsies
• New paradigm: Precision Medicine
• Heterogeneity & Dynamics
• Surrogate mirror for the tumor
• CTCs in colon cancer
• ctDNA:
– Technical approaches
– Heterogeneity & Dynamics
– Disease course
– Therapy monitoring
• Enumeration
• Immunofluorescence
• Fluorescence in situ hybridization
• Next Generation Sequencing
• Mutation Detection
• Gene Expression
• Enumeration
• Immunofluorescence
Predictive Value: OS of MCRC Patients with <3 or >3 CTC
at Baseline (N=413)
%P
rob
ab
ilit
y o
f S
urv
iva
l
Time from Baseline Blood Draw (Months)
0 2 4 6 8 10 12 14 16 18 22 24 26 28 30
0%
10%
20%
30%
40%
50%
60%
70%
80%
90%
100%
20
Logrank
p < 0.0001
18.5 Months
9.4
Months
Cox Hazard Ratio = 2.5
chi-square = 31.48
(p-value < 0.0001)
CTC / 7.5mL Median OS in
at Baseline N (%) Months (95% C.I.)
<3 CTC 305 (74%) 18.5 (15.5 to 21.2)
>3 CTC 108 (26%) 9.4 ( 7.5 to 11.6)
A Reduction in CTC Below 3 After the Initiation of Therapy Predicts
Longer OS whereas an Increase in CTC Count to 3 or above Predicts a
Shorter OS
*p-values not adjusted for multiple hypothesis tests
1
2
34
Curve Logrank
Comparison p-Value*
1 vs. 2 0.0007
1 vs. 3 <0.0001
1 vs. 4 <0.0001
2 vs. 3 0.0078
2 vs. 4 <0.0001
3 vs. 4 0.0001
%P
rob
ab
ilit
y o
f S
urv
iva
l
Time from Baseline Blood Draw (Months)
0 2 4 6 8 10 12 14 16 18 22 24 26 28 30
0%
10%
20%
30%
40%
50%
60%
70%
80%
90%
100%
20
*p-values not adjusted for
multiple hypothesis tests
Median OS in
Group Description N (%) Months (95% C.I.)
1 <3 CTC at All Draws 303 (70%) 18.6 (15.9 to 22.5)
2 >3 CTC at BL & <3 CTC at Last Draw 74 (17%) 11.7 ( 9.4 to 18.7)
3 <3 CTC at Early Draw & >3 CTC at Last Draw 29 ( 7%) 7.1 ( 6.3 to 10.8)
4 >3 CTC at All Draws 24 ( 6%) 3.9 ( 2.5 to 5.4)
Main issues about liquid biopsies
• New paradigm: Precision Medicine
• Heterogeneity & Dynamics
• Surrogate mirror for the tumor
• CTCs in colon cancer
• ctDNA:
– Technical approaches
– Heterogeneity & Dynamics
– Disease course
– Therapy monitoring
Main issues about liquid biopsies
• New paradigm: Precision Medicine
• Heterogeneity & Dynamics
• Surrogate mirror for the tumor
• CTCs in colon cancer
• ctDNA:
– Technical approaches
– Heterogeneity & Dynamics
– Disease course
– Therapy monitoring
BEAMing
Pre-
AmplificationEmulsion PCR
Hybridization
Flow
Cytometry
Flow cytometry analysis
Mutant signal
Mutant
DNA
Mutant &
Wild-type DNA
Wild-type DNA
Wil
d-t
yp
e s
ign
al
Digital PCR
Main issues about liquid biopsies
• New paradigm: Precision Medicine
• Heterogeneity & Dynamics
• Surrogate mirror for the tumor
• CTCs in colon cancer
• ctDNA:
– Technical approaches
– Heterogeneity & Dynamics
– Disease course
– Therapy monitoring
Main issues about liquid biopsies
• New paradigm: Precision Medicine
• Heterogeneity & Dynamics
• Surrogate mirror for the tumor
• CTCs in colon cancer
• ctDNA:
– Technical approaches
– Heterogeneity & Dynamics
– Disease course
– Therapy monitoring
Cell-free tumor DNA in stage IV
(n = 177)
Cell-free tumor DNA in stage IV
Bettegowda et al, Sci Tran Med Feb 2014
Localized vs Metastatic Disease (n = 223)
Main issues about liquid biopsies
• New paradigm: Precision Medicine
• Heterogeneity & Dynamics
• Surrogate mirror for the tumor
• CTCs in colon cancer
• ctDNA:
– Technical approaches
– Heterogeneity & Dynamics
– Disease course
– Therapy monitoring
ctDNA: Monitoring of tumor burden
Diehl et at. Nat Med. 2008
Cell-free tumor DNA
CEA
No detectable mutations in plasma
(n = 4)
Detectable mutations in plasma
(n = 14)
No detectable CEA (normal range boundary)
(n = 10)
Detectable CEA
(n = 8)
162 plasma samples from 18 pts (CRC pts)
p=0.0006
p=0.03
ctDNA: monitoring response
Baseline Imaging
8 weeks later
Courtesy of: Jeanne Tie, Peter Gibbs: Ann Oncol 2015
53 mCRC (ctDNA vs CEA and tumor burden)