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EFFECT OF PHOTOPERIOD MANIPULATION ON RAINBOW TROUT EGG QUALITY A GENOMIC STUDY Emilie BONNET, Alexis FOSTIER, Julien BOBE INRA SCRIBE IFR140, Campus de Beaulieu, 35042 Rennes Cedex [email protected]

EFFECT OF PHOTOPERIOD MANIPULATION ON · PDF fileEFFECT OF PHOTOPERIOD MANIPULATION ON RAINBOW TROUT EGG QUALITY A GENOMIC STUDY Emilie BONNET, Alexis FOSTIER, Julien BOBE INRA SCRIBE

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Page 1: EFFECT OF PHOTOPERIOD MANIPULATION ON · PDF fileEFFECT OF PHOTOPERIOD MANIPULATION ON RAINBOW TROUT EGG QUALITY A GENOMIC STUDY Emilie BONNET, Alexis FOSTIER, Julien BOBE INRA SCRIBE

EFFECT OF PHOTOPERIOD MANIPULATION ON RAINBOW TROUT EGG QUALITY

A GENOMIC STUDY

Emilie BONNET, Alexis FOSTIER, Julien BOBEINRA SCRIBE IFR140, Campus de Beaulieu, 35042 Rennes Cedex

[email protected]

Page 2: EFFECT OF PHOTOPERIOD MANIPULATION ON · PDF fileEFFECT OF PHOTOPERIOD MANIPULATION ON RAINBOW TROUT EGG QUALITY A GENOMIC STUDY Emilie BONNET, Alexis FOSTIER, Julien BOBE INRA SCRIBE

Fish egg quality can be defined as the egg ability to be fertilized and to subsequently lead to the development of a normal embryo

…Preamble…

Egg quality is subjected to high variability, in the wild or in hatcheries

Page 3: EFFECT OF PHOTOPERIOD MANIPULATION ON · PDF fileEFFECT OF PHOTOPERIOD MANIPULATION ON RAINBOW TROUT EGG QUALITY A GENOMIC STUDY Emilie BONNET, Alexis FOSTIER, Julien BOBE INRA SCRIBE

Stress

Schreck et al., 2001

…Context…

cortisol

14°C

18°C

High watertemperature

Davies and Bromage, 2002

Embryonic survival (%)

020406080

100

0 5 14 21days

Egg post-ovulatory ageing

Aegerter et al., 2003

Low egg quality has previously been correlated withoogenesis conditions such as :

Diet

Izquierdo et al., 2001

Page 4: EFFECT OF PHOTOPERIOD MANIPULATION ON · PDF fileEFFECT OF PHOTOPERIOD MANIPULATION ON RAINBOW TROUT EGG QUALITY A GENOMIC STUDY Emilie BONNET, Alexis FOSTIER, Julien BOBE INRA SCRIBE

Photoperiod is the major factor affecting the timing of ovulation in many species

in SoleSolea solea(Devauchelle et al., 1987)

Sea BassDicentrachus labrax L.(Carrillo et al., 1989)

yellow perch Perca flavescens(Ciereszko et al., 1997)

rainbow troutOncorhynchus mykiss(Davies and Bromage, 2002)

…Context…

Page 5: EFFECT OF PHOTOPERIOD MANIPULATION ON · PDF fileEFFECT OF PHOTOPERIOD MANIPULATION ON RAINBOW TROUT EGG QUALITY A GENOMIC STUDY Emilie BONNET, Alexis FOSTIER, Julien BOBE INRA SCRIBE

…Context…

In rainbow trout, photoperiod is also known to modulate fecundity and egg size

However…

Little is known about its direct effect on egg quality in terms of survival and embryonic development

Page 6: EFFECT OF PHOTOPERIOD MANIPULATION ON · PDF fileEFFECT OF PHOTOPERIOD MANIPULATION ON RAINBOW TROUT EGG QUALITY A GENOMIC STUDY Emilie BONNET, Alexis FOSTIER, Julien BOBE INRA SCRIBE

HIGH variability in egg quality

Oogenesis history

stress diet

photoperiodic manipulationswater Temperature

synchronisation of ovulationPost-ovulatory ageing

etc

Egg composition

trophic storesProteins

Messenger RNAsetc

…Context…

Fertilization

Transition

Storedmaternal

mRNA

EarlyEmbryo

time

Zygote mRNAs

Page 7: EFFECT OF PHOTOPERIOD MANIPULATION ON · PDF fileEFFECT OF PHOTOPERIOD MANIPULATION ON RAINBOW TROUT EGG QUALITY A GENOMIC STUDY Emilie BONNET, Alexis FOSTIER, Julien BOBE INRA SCRIBE

…Aim of the study…

1- Does a long-short photoperiod regimeaffect egg quality?

2-Does it modulate expression of some maternally inherited mRNAs?

Page 8: EFFECT OF PHOTOPERIOD MANIPULATION ON · PDF fileEFFECT OF PHOTOPERIOD MANIPULATION ON RAINBOW TROUT EGG QUALITY A GENOMIC STUDY Emilie BONNET, Alexis FOSTIER, Julien BOBE INRA SCRIBE

…Work…

2. To analyze egg maternal mRNA, we used rainbow trout cDNA microarrays

1. To test photoperiod effects, we use a Long-short photoperiod regime widely used in hatcheries

Page 9: EFFECT OF PHOTOPERIOD MANIPULATION ON · PDF fileEFFECT OF PHOTOPERIOD MANIPULATION ON RAINBOW TROUT EGG QUALITY A GENOMIC STUDY Emilie BONNET, Alexis FOSTIER, Julien BOBE INRA SCRIBE

…Methods…D

ayle

ngth

(hou

rs)

J F M A M J J A S O N D0

4

8

12

16

20

24

Control group

Day

leng

th(h

ours

)

J F M A M J J A S O N D0

4

8

12

16

20

24

Photoperiod (PM) group

Tem

pera

ture

(°C

)Te

mpe

ratu

re(°

C)

water temperature 12°C

8L:16D PM/ natural COvulation checked three times a week

INRA facilities

3-4 weeks before expected ovulations

M

S

Page 10: EFFECT OF PHOTOPERIOD MANIPULATION ON · PDF fileEFFECT OF PHOTOPERIOD MANIPULATION ON RAINBOW TROUT EGG QUALITY A GENOMIC STUDY Emilie BONNET, Alexis FOSTIER, Julien BOBE INRA SCRIBE

nylon membrane

MICROARRAYS

2*9152 trout cDNApool-tissue library

14 PM /4 ControlStatistical

Differential analysis

Unfertilised and frozen -80°C

Eyeing (10°C)Survival

Fertilization (10°C)

Semen pool

Yolk-sac resorption (10°C)Malformations and survival

QUALITY

2 Survival index

Malformation percentage

…Methods…

Egg qualityTrial

Eggs stripped 5 days after ovulation

Transcriptomeanalysis

Page 11: EFFECT OF PHOTOPERIOD MANIPULATION ON · PDF fileEFFECT OF PHOTOPERIOD MANIPULATION ON RAINBOW TROUT EGG QUALITY A GENOMIC STUDY Emilie BONNET, Alexis FOSTIER, Julien BOBE INRA SCRIBE

controlPMmeans

20

40

60

80

100

0

Eyeing

Surv

ival

s%

***

…Quality…

Only 49% survival in PM group at eying

High variability between females

ANF

***

Mal

form

atio

ns %

YSR

*

20

40

60

80

100

0

Confirmed at YSR Alive Normal Fry less 40%malformations >15 %

Photoperiod manipulation induces a decrease of egg

quality withhigh individual variability & increase of malformations

Page 12: EFFECT OF PHOTOPERIOD MANIPULATION ON · PDF fileEFFECT OF PHOTOPERIOD MANIPULATION ON RAINBOW TROUT EGG QUALITY A GENOMIC STUDY Emilie BONNET, Alexis FOSTIER, Julien BOBE INRA SCRIBE

…Quality…

C : Cyclops

P : Prognate

SCT : Spinal cordtorsion

DYSR : Default in yolk-sac resorption

others

0

20

40

60

80

100

C othersSCT DYSR P

Mal

form

atio

n %

*

controlPM

Types of malformation were different between two groups

No Cyclops type in PM

High proportion of DYSR

Photoperiod manipulation more DYSR

Egg post-ovulatory ageingmore Cyclops (Aegerter,2004)

Is there a Malformation signature dependent on

oogenesis history ??

Page 13: EFFECT OF PHOTOPERIOD MANIPULATION ON · PDF fileEFFECT OF PHOTOPERIOD MANIPULATION ON RAINBOW TROUT EGG QUALITY A GENOMIC STUDY Emilie BONNET, Alexis FOSTIER, Julien BOBE INRA SCRIBE

…Transcriptome…

Photoperiod manipulation is associated withdifferences in egg mRNA levels

Hybridizations : 8422 detected clones

NGLY151%Peptide:N-glycanase(Homo sapiens)

CA381309

UK267%Predicted protein (Danio rerio)

BX080208

TPH175%Tryptophan hydroxylase 1 (Danio rerio)

CA351681

UK178%Unnamed proteinproduct (Tetraodon nigroviridis)

CA353335

GLP290%Glucagon II precursor (Rainbow trout)

BX886170

MAK1092%Amino-acid N-acetyltransferase subunit (Danio rerio)

CA377449

SymbolAA

sequence identity %

Hit description (Species)

GenBankaccession #

Differential analysis : 6 maternal mRNA significantly lessabundant in PM group eggs

02468

1012

00,5

11,5

22,5

UK1 TPH1

00,5

11,5

22,5

00,10,20,30,40,5

00,5

11,5

22,5

MAK10 GLP2

00,5

11,5

22,5

05

1015202530

UK2 NGLY1

Page 14: EFFECT OF PHOTOPERIOD MANIPULATION ON · PDF fileEFFECT OF PHOTOPERIOD MANIPULATION ON RAINBOW TROUT EGG QUALITY A GENOMIC STUDY Emilie BONNET, Alexis FOSTIER, Julien BOBE INRA SCRIBE

…MAK10…

MAK10 is an auxiliary subunit of N-terminal acetyl transferase C ( NAT C), in yeast.

Photoperiod manipulation could directly affect MAK10 expression in regards to its correlation with melatonin

or its clock-controlled role

In humans, ovarian NAT activity was correlated with the synthesis of melatonin and serotonin (Itoh et al., 1999).

In cockroachs (Periplaneta americana), NAT could be a clock-controlled gene in the brain functioning as an output regulator of the circadian clock (Bembenek et al., 2005)

Page 15: EFFECT OF PHOTOPERIOD MANIPULATION ON · PDF fileEFFECT OF PHOTOPERIOD MANIPULATION ON RAINBOW TROUT EGG QUALITY A GENOMIC STUDY Emilie BONNET, Alexis FOSTIER, Julien BOBE INRA SCRIBE

…Glucagon II…Glucagon/glucagon-like peptides (GLP) are involved in the regulation of hepatic glycogenolysis and gluconeogenesis

(reviewed by Plisetskaya and Mommsen, 1996; Moon, 1998).

These observations are consistent with the decrease of survival observed at YSR in PM group

for which glugagon was less abundant.

In mammals, glucagon plays an important role in the correction of hypoglycemia.

Interestingly, glucose insufficiencies are involved in abnormal embryonic development in mice (Smoak, 2002).

Glucagon has also been shown to be essential for the paracrine induction of differentiation of other pancreatic components in the early embryonic pancreas in mice (Prasadanet al., 2002).

Page 16: EFFECT OF PHOTOPERIOD MANIPULATION ON · PDF fileEFFECT OF PHOTOPERIOD MANIPULATION ON RAINBOW TROUT EGG QUALITY A GENOMIC STUDY Emilie BONNET, Alexis FOSTIER, Julien BOBE INRA SCRIBE

…Conclusion…

A long-short photoperiod regime commonly used to advance spawning date in rainbow trout can induce significant egg quality defects

Lower survival at eying and yolk-sac resorption

higher malformation percentage

higher individual variation between females.

In addition, new clues indicate a potential link between specific malformation signatures and oogenesis history

Finally, this study suggests that the egg transcriptomebefore fertilization can be influenced by environmental perturbations

Page 17: EFFECT OF PHOTOPERIOD MANIPULATION ON · PDF fileEFFECT OF PHOTOPERIOD MANIPULATION ON RAINBOW TROUT EGG QUALITY A GENOMIC STUDY Emilie BONNET, Alexis FOSTIER, Julien BOBE INRA SCRIBE

…Prospects…

To Use rainbow trout cDNA microarrays as a

powerful tool to characterize fish egg

transcriptome

Study effects of other factors on egg quality

synchronisation of ovulation

Do a functional analysis

To detail the 6 maternal mRNA identified in this study

In fish, these conclusions are original and illustratethe importance to

Study the relation between quality and mRNA in PM

group

Page 18: EFFECT OF PHOTOPERIOD MANIPULATION ON · PDF fileEFFECT OF PHOTOPERIOD MANIPULATION ON RAINBOW TROUT EGG QUALITY A GENOMIC STUDY Emilie BONNET, Alexis FOSTIER, Julien BOBE INRA SCRIBE

Emilie BONNET, Alexis FOSTIER, Julien BOBEINRA SCRIBE IFR140, Campus de Beaulieu, 35042 Rennes [email protected]

Funding INRA-AGENAE-IFOP-OFIMER-CIPA

AGENAE-GADIE core facility for providing troutcDNA microarrays

phD grant to E. Bonnet from French Government