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Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone Daniel J. Park, Gytis Dudas, Shirlee Wohl, Augustine Goba, Shannon L.M. Whitmer, Kristian G. Andersen, Rachel S. Sealfon, Jason T. Ladner, Jeffrey R. Kugelman, Christian B. Matranga, Sarah M. Winnicki, James Qu, Stephen K. Gire, Adrianne Gladden-Young, Simbirie Jalloh, Dolo Nosamiefan, Nathan L. Yozwiak, Lina M. Moses, Pan-Pan Jiang, Aaron E. Lin, Stephen F. Schaffner, Brian Bird, Jonathan Towner, Mambu Mamoh, Michael Gbakie, Lansana Kanneh, David Kargbo, James L.B. Massally, Fatima K. Kamara, Edwin Konuwa, Josephine Sellu, Abdul A. Jalloh, Ibrahim Mustapha, Momoh Foday, Mohamed Yillah, Bobbie R. Erickson, Tara Sealy, Dianna Blau, Christopher Paddock, Aaron Brault, Brian Amman, Jane Basile, Scott Bearden, Jessica Belser, Eric Bergeron, Shelley Campbell, Ayan Chakrabarti, Kimberly Dodd, Mike Flint, Aridth Gibbons, Christin Goodman, John Klena, Laura McMullan, Laura Morgan, Brandy Russell, Johanna Salzer, Angela Sanchez, David Wang, Irwin Jungreis, Christopher Tomkins-Tinch, Andrey Kislyuk, Michael F. Lin, Sinead Chapman, Bronwyn MacInnis, Ashley Matthews, James Bochicchio, Lisa E. Hensley, Jens H. Kuhn, Chad Nusbaum, John S. Schieffelin, Bruce W. Birren, Marc Forget, Stuart T. Nichol, Gustavo F. Palacios, Daouda Ndiaye, Christian Happi, Sahr M. Gevao, Mohamed A. Vandi, Brima Kargbo, Edward C. Holmes, Trevor Bedford, Andreas Gnirke, Ute Ströher, Andrew Rambaut, Robert F. Garry, Pardis C. Sabeti Cell Volume 161, Issue 7, Pages 1516-1526 (June 2015) DOI: 10.1016/j.cell.2015.06.007 Copyright © 2015 The Authors Terms and Conditions

Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone Daniel J. Park, Gytis Dudas, Shirlee Wohl, Augustine Goba, Shannon

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Page 1: Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone Daniel J. Park, Gytis Dudas, Shirlee Wohl, Augustine Goba, Shannon

Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone 

Daniel J. Park, Gytis Dudas, Shirlee Wohl, Augustine Goba, Shannon L.M. Whitmer, Kristian G. Andersen, Rachel S. Sealfon, Jason T. Ladner, Jeffrey R. Kugelman, Christian B. Matranga, Sarah M. Winnicki, James Qu, Stephen K. Gire, Adrianne Gladden-Young,

Simbirie Jalloh, Dolo Nosamiefan, Nathan L. Yozwiak, Lina M. Moses, Pan-Pan Jiang, Aaron E. Lin, Stephen F. Schaffner, Brian Bird, Jonathan Towner, Mambu Mamoh, Michael Gbakie, Lansana Kanneh, David Kargbo, James L.B. Massally, Fatima K. Kamara, Edwin

Konuwa, Josephine Sellu, Abdul A. Jalloh, Ibrahim Mustapha, Momoh Foday, Mohamed Yillah, Bobbie R. Erickson, Tara Sealy, Dianna Blau, Christopher Paddock, Aaron Brault, Brian Amman, Jane Basile, Scott Bearden, Jessica Belser, Eric Bergeron, Shelley Campbell, Ayan Chakrabarti, Kimberly Dodd, Mike Flint, Aridth Gibbons, Christin Goodman, John Klena, Laura McMullan, Laura Morgan, Brandy

Russell, Johanna Salzer, Angela Sanchez, David Wang, Irwin Jungreis, Christopher Tomkins-Tinch, Andrey Kislyuk, Michael F. Lin, Sinead Chapman, Bronwyn MacInnis, Ashley Matthews, James Bochicchio, Lisa E. Hensley, Jens H. Kuhn, Chad Nusbaum, John S.

Schieffelin, Bruce W. Birren, Marc Forget, Stuart T. Nichol, Gustavo F. Palacios, Daouda Ndiaye, Christian Happi, Sahr M. Gevao, Mohamed A. Vandi, Brima Kargbo, Edward C. Holmes, Trevor Bedford, Andreas Gnirke, Ute Ströher, Andrew Rambaut, Robert F.

Garry, Pardis C. Sabeti 

Cell Volume 161, Issue 7, Pages 1516-1526 (June 2015)

DOI: 10.1016/j.cell.2015.06.007

Copyright © 2015 The Authors Terms and Conditions

Page 2: Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone Daniel J. Park, Gytis Dudas, Shirlee Wohl, Augustine Goba, Shannon

Figure 1

Cell 2015 161, 1516-1526DOI: (10.1016/j.cell.2015.06.007) Copyright © 2015 The Authors Terms and Conditions

Page 3: Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone Daniel J. Park, Gytis Dudas, Shirlee Wohl, Augustine Goba, Shannon

Figure 2

Cell 2015 161, 1516-1526DOI: (10.1016/j.cell.2015.06.007) Copyright © 2015 The Authors Terms and Conditions

Page 4: Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone Daniel J. Park, Gytis Dudas, Shirlee Wohl, Augustine Goba, Shannon

Figure 3

Cell 2015 161, 1516-1526DOI: (10.1016/j.cell.2015.06.007) Copyright © 2015 The Authors Terms and Conditions

Page 5: Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone Daniel J. Park, Gytis Dudas, Shirlee Wohl, Augustine Goba, Shannon

Figure 4

Cell 2015 161, 1516-1526DOI: (10.1016/j.cell.2015.06.007) Copyright © 2015 The Authors Terms and Conditions

Page 6: Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone Daniel J. Park, Gytis Dudas, Shirlee Wohl, Augustine Goba, Shannon

Figure S1

Cell 2015 161, 1516-1526DOI: (10.1016/j.cell.2015.06.007) Copyright © 2015 The Authors Terms and Conditions

Page 7: Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone Daniel J. Park, Gytis Dudas, Shirlee Wohl, Augustine Goba, Shannon

Figure S2

Cell 2015 161, 1516-1526DOI: (10.1016/j.cell.2015.06.007) Copyright © 2015 The Authors Terms and Conditions

Page 8: Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone Daniel J. Park, Gytis Dudas, Shirlee Wohl, Augustine Goba, Shannon

Figure S3

Cell 2015 161, 1516-1526DOI: (10.1016/j.cell.2015.06.007) Copyright © 2015 The Authors Terms and Conditions

Page 9: Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone Daniel J. Park, Gytis Dudas, Shirlee Wohl, Augustine Goba, Shannon

Figure S4

Cell 2015 161, 1516-1526DOI: (10.1016/j.cell.2015.06.007) Copyright © 2015 The Authors Terms and Conditions

Page 10: Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone Daniel J. Park, Gytis Dudas, Shirlee Wohl, Augustine Goba, Shannon

Cell 2015 161, 1516-1526DOI: (10.1016/j.cell.2015.06.007) Copyright © 2015 The Authors Terms and Conditions