Upload
others
View
0
Download
0
Embed Size (px)
Citation preview
DWARF27, an Iron-Containing Protein Required for theBiosynthesis of Strigolactones, Regulates Rice TillerBud Outgrowth W OA
Hao Lin,a,1 Renxiao Wang,a,1,2 Qian Qian,b,1 Meixian Yan,b Xiangbing Meng,a,c Zhiming Fu,a,c Cunyu Yan,c
Biao Jiang,d Zhen Su,e Jiayang Li,a,c and Yonghong Wanga,c,3
a State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences,
Beijing 100101, Chinab State Key Laboratory of Rice Biology, China National Rice Research Institute, Chinese Academy of Agricultural Sciences,
Hangzhou 310006, Chinac National Center for Plant Gene Research (Beijing), Beijing 100101, Chinad Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, Shanghai 200032, Chinae China Agricultural University, Beijing 100094, China
Tillering in rice (Oryza sativa) is one of the most important agronomic traits that determine grain yields. Previous studies on
rice tillering mutants have shown that the outgrowth of tiller buds in rice is regulated by a carotenoid-derived MAX/RMS/D
(more axillary branching) pathway, which may be conserved in higher plants. Strigolactones, a group of terpenoid lactones,
have been recently identified as products of the MAX/RMS/D pathway that inhibits axillary bud outgrowth. We report here
the molecular genetic characterization of d27, a classic rice mutant exhibiting increased tillers and reduced plant height.
D27 encodes a novel iron-containing protein that localizes in chloroplasts and is expressed mainly in vascular cells of
shoots and roots. The phenotype of d27 is correlated with enhanced polar auxin transport. The phenotypes of the d27 d10
double mutant are similar to those of d10, a mutant defective in the ortholog of MAX4/RMS1 in rice. In addition, 29-epi-5-deoxystrigol, an identified strigolactone in root exudates of rice seedlings, was undetectable in d27, and the phenotypes of
d27 could be rescued by supplementation with GR24, a synthetic strigolactone analog. Our results demonstrate that D27 is
involved in the MAX/RMS/D pathway, in which D27 acts as a newmember participating in the biosynthesis of strigolactones.
INTRODUCTION
Shoot branching plays an important role in determining the
diversity of plant architectures. In higher plants, branches are
derived from shoot apical meristems (SAMs). The primary SAM
provides the main axis of the plant body, while the secondary
SAMs in the axils of leaves generate axillary meristems (AMs)
(McSteen and Leyser, 2005). Formation of branches generally
comprises two distinct steps: the formation of AMs in the leaf
axils and the outgrowth of axillary buds (Shimizu-Sato and Mori,
2001). However, after initiation, an AM can arrest its growth and
form a dormant bud, which will be released in response to
particular environmental and/or developmental signals (Wang
and Li, 2008).
In some plant species, the outgrowth of axillary buds may be
inhibited by the primary shoot, a phenomenon known as apical
dominance (Sachs and Thimann, 1964; Cline, 1991). The plant
hormone auxin has long been implicated in participating in this
process (Thimann and Skoog, 1934; Cline, 1991; Leyser, 2003).
Indole-3-acetic acid (IAA) is the most abundant natural plant
auxin and is synthesized mainly in the shoot apex and young
leaves. It is transported along the shoot-root axis from cell to cell
in a polar manner, which is essential for inhibiting the outgrowth
of axillary buds (Ljung et al., 2001; Leyser, 2003; Sieberer and
Leyser, 2006). However, a large body of evidence suggests that
auxin cannot directly enter the axillary buds and that a second
messenger is required to inhibit the outgrowth of axillary buds
(Shelagh and John, 1975;Morris, 1977; Pilate et al., 1989; Prasad
et al., 1993; Booker et al., 2003). Cytokinin is the first reported
second messenger candidate, which is synthesized in roots and
transported acropetally in the xylem to promote directly the
outgrowth of axillary buds (Van Dijck et al., 1988; Cline, 1991;
Eklof et al., 1997; Kapchina-Toteva et al., 2000; Nordstrom et al.,
2004). Exogenous application of cytokinin to axillary buds pro-
motes their outgrowth (Sachs and Thimann, 1964; Cline, 1991).
Increased cytokinin levels lead to reduced apical dominance in
Arabidopsis thaliana (Tantikanjana et al., 2001; Jung et al., 2005).
It is plausible that auxin suppresses the outgrowth of axillary
buds by influencing the supply of cytokinin to axillary buds (Eklof
1 These authors contributed equally to this work.2 Current address: Institutes of Biology II, Albert-Ludwigs-Universitat ofFreiburg, Schanzlestrasse 1, D-79104 Freiburg, Germany.3 Address correspondence to [email protected] author responsible for distribution of materials integral to thefindings presented in this article in accordance with the policy describedin the Instructions for Authors (www.plantcell.org) is: Yonghong Wang([email protected]).WOnline version contains Web-only data.OAOpen access articles can be viewed online without a subscription.www.plantcell.org/cgi/doi/10.1105/tpc.109.065987
The Plant Cell, Vol. 21: 1512–1525, May 2009, www.plantcell.org ã 2009 American Society of Plant Biologists
Dow
nloaded from https://academ
ic.oup.com/plcell/article/21/5/1512/6095307 by guest on 31 July 2021
Figure 1. Morphological Comparison between Wild-Type and d27 Plants.
(A) The phenotype of wild-type (Shiokari) (left) and d27 seedling (right). Arrow indicates the first tiller in d27, which is absent in wild type at this stage.
Bar = 1 cm.
(B) Developmental process of tiller buds at the axil of the first leaves in the wild type (top panel) and d27 (bottom panel), showing the accelerated tiller
D27, a New Member of the MAX Pathway 1513
Dow
nloaded from https://academ
ic.oup.com/plcell/article/21/5/1512/6095307 by guest on 31 July 2021
et al., 2000; Li and Bangerth, 2003; Nordstrom et al., 2004;
Tanaka et al., 2006).
Recent studies on a series of branching mutants,more axillary
growth (max) of Arabidopsis, ramosus (rms) mutants of pea
(Pisum sativum), decreased apical dominance (dad) mutants of
petunia (Petunia hybrida), have revealed an additional carotenoid-
derived hormone as a second messenger of auxin action on the
regulation of AM outgrowth (Beveridge et al., 1994, 1996, 2000;
Napoli, 1996; Stirnberg et al., 2002; Sorefan et al., 2003; Booker
et al., 2004, 2005; Simons et al., 2007). Genetic analysis and
grafting experiments on these mutants have shown that this kind
of carotenoid derivative, synthesized in the root and transported
acropetally or synthesized locally, represses branch outgrowth
(Beveridge et al., 1997; Morris et al., 2001; Turnbull et al., 2002;
Sorefan et al., 2003). In Arabidopsis, four MAX loci, MAX1 to
MAX4, have been identified and proved to be involved in a
common signaling pathway, known as theMAXpathway (Booker
et al., 2005). MAX1, a cytochrome P450 family member, acts
downstream of MAX3 and MAX4, two carotenoid cleavage
deoxygenase (CCD) family proteins, CCD7 and CCD8, in the
biosynthesis of the signal (Sorefan et al., 2003; Booker et al.,
2004, 2005; Lazar and Goodman, 2006). By contrast, MAX2
encodes an F-box protein, which is responsible for perceiving
and transducing the signal (Stirnberg et al., 2002, 2007). In pea,
RMS4, RMS5, and RMS1 are orthologous of MAX2, MAX3, and
MAX4, respectively (Sorefan et al., 2003; Johnson et al., 2006).
Although the outgrowth behaviors between dicotyledonous
and monocotyledonous AMs are apparently different, the fact
that orthologs ofMAX2 toMAX4 have also been identified in rice
(Oryza sativa) suggests that monocots and dicots share a con-
served MAX-involved carotenoid-derived branching signal path-
way (Wang and Li, 2008). Rice plants defective inD3,HTD1/D17,
and D10, which correspond to Arabidopsis MAX2, MAX3, and
MAX4, respectively, give rise to more tillers and reduced plant
height (Ishikawa et al., 2005; Zou et al., 2006; Arite et al., 2007),
indicating their similar functions in suppressing the branch
development in monocotyledonous plants. Thereafter, this
carotenoid-derived branching inhibiting signal pathway was
generally known as the MAX/RMS/D pathway.
Recently, two groups have independently reported that the
MAX/RMS/D pathway is involved in the production and signaling
of strigolactones (Gomez-Roldan et al., 2008; Umehara et al.,
2008). Strigolactones, synthesized from carotenoids, are a group
of terpenoid lactones that have been found in root exudates of
diverse plant species (Cook et al., 1972; Bouwmeester et al.,
2003; Matusova et al., 2005; Humphrey and Beale, 2006; Lopez-
Raez et al., 2008). Mutations of CCD7 or CCD8 in pea, rice, and
Arabidopsis results in reduced strigolactones production. By
contrast, the signaling mutant d3, which is defective in the
ortholog of Arabidopsis MAX2, accumulates higher levels of
strigolactones. Furthermore, application of strigolactones in-
hibits shoot branching in the ccd mutants of pea, rice, and
Arabidopsis, but it has no effect on rms4/max2/d3 signaling
mutants (Gomez-Roldan et al., 2008; Umehara et al., 2008).
These data strongly suggest that strigolactones act as a new
class of phytohormones involved in regulating plant branching.
Strigolactones have been identified previously as seed germi-
nation stimulants of root parasitic plants (Cook et al., 1972;
Bouwmeester et al., 2003; Humphrey and Beale, 2006) and
hyphal branching signals when plants interact with mycorrhizal
fungi (Akiyama et al., 2005). However, the strigolactone biosyn-
thesis and signaling pathways still remain to be elucidated.
Identification of new branching mutants and isolation of their
genes in multiple plant systems will facilitate the elucidation of
the biosynthesis and signaling pathways of this new type of
hormone in plants.
Tillering in rice is one of the most important agronomic traits
that determine grain yields and a model system for elucidating
molecular mechanisms that regulate axillary buds (Wang and Li,
2005). In this study, we characterize a rice dwarf 27 (d27) mutant
that is defective in the outgrowth of axillary buds. Map-based
cloning and in-depth analysis of D27 revealed that it encodes a
novel chloroplast-located iron-containing protein. Our results
demonstrate that D27 regulates tiller bud outgrowth through the
MAX/RMS/D pathway and participates in the biosynthesis of
strigolactones.
RESULTS
Phenotypes of the Rice Tillering Dwarf Mutant d27
The rice d27mutant is a classic rice mutant described previously
(Ishikawa et al., 2005; Arite et al., 2007). To elucidate the
molecular mechanism that determines rice tiller number, we
further characterized d27 in depth. At the seedling stage, d27
Figure 1. (continued).
bud elongation in d27. The pictures were photographed when the third leaf was 0, 2, 4, and 6 cm in length. Arrows indicate the examined tiller buds.
Bars = 1 mm.
(C) Phenotype of wild-type (left) and d27 (right) plants at the heading stage. Bar = 10 cm.
(D) Kinetic analyses of the elongation of tiller buds at the axil of the first leaves indicated in (B). Each value represents the mean 6 SE of 15 replicates.
(E) Kinetic comparison of tiller numbers between wild-type and d27 plants at different developmental stages. Each value represents themean6 SE of 15
replicates.
(F) The types of tillers at the heading stage. Pt, primary tillers; St, secondary tillers; Tt, tertiary tillers; Qt, quaternary tillers. Each value represents the
mean 6 SE of 15 replicates.
(G) to (J) Cross sections of the wild type ([G] and [I]) and d27 ([H] and [J]) culms. Bars = 100 mm.
(I) and (J) are magnifications of indicated regions in (G) and (H), respectively. Bars = 50 mm.
(K) Morphological comparison of flag leaves between the wild type (left) and d27 (right). Bar = 1 cm.
(L) and (M) Micrographs of cleared flag leaves from the wild type (L) and d27 (M). The regions indicated in (K) are shown. Bars = 100 mm.
1514 The Plant Cell
Dow
nloaded from https://academ
ic.oup.com/plcell/article/21/5/1512/6095307 by guest on 31 July 2021
exhibits accelerated tiller production (Figure 1A). Kinetic analysis
of the tiller bud development demonstrated that the increased
tiller number is ascribed to accelerated tiller bud outgrowth
rather than to more tiller bud formation (Figures 1B and 1D; see
Supplemental Figure 1 online). At the mature stage, the d27
mutant plant showed a high tillering and severe dwarf phenotype
(Figure 1C). Kinetic analysis showed that the final tiller number of
d27 is three times that of the wild type (Figure 1E), which results
from the outgrowth of higher-order tillers (Figure 1F). Further
histological analysis suggested that the cell number and size are
both reduced in d27mutant culms and leaves, leading to severe
dwarfism in the mutant plant (Figures 1G to 1M).
Cloning and Characterization of D27
To isolate theD27gene, we took amap-based cloning approach.
D27 was primarily delimited in an interval of;3.0 centimorgans
between the two molecular markers C189 and RM206 on the
long arm of chromosome 11 (Figure 2A). To fine-map the D27
locus, we generated a large F2 mapping population derived
from a cross between d27-ZF802 and its isogenetic lines ZF802.
Of 21,000 F2 plants, 5200 mutant plants were used for fine-
mapping, and the D27 locus was located between the two
cleaved amplified polymorphic sequence (CAPS) markers P1
and P7 (Figure 2B). Screening with newly developed molecular
markers P1 to P7 (see Supplemental Table 1 online), D27 was
further placed within an 18-kb DNA region between the P3 and
P6 markers and cosegregated with the P5 marker (Figure 2C).
Within this region, there are two open reading frames (ORFs).
Sequencing of these two ORFs of d27-ZF802 revealed a
4-bp deletion at the fourth exon of a putative gene, ORF
LOC_Os11g37650, and this deletion results in a frame shift and
generates a premature translation termination product (see
Supplemental Figure 2 online).
The identity of D27 was further confirmed by a genetic com-
plementation test. The plasmid pD27C, containing a 9.25-kb
genomic DNA fragment consisting of a 2236-bp upstream se-
quence, the entire D27 gene including seven exons and six
introns, and a 2044-bp downstream region (Figure 2D), was
introduced into a d27-Nipponbare mutant. All four transgenic
lines of pD27C complement the d27 phenotype (Figure 2E).
Therefore, ORF LOC_Os11g37650 is the rice D27 gene, and its
4-bp deletion is responsible for the altered phenotype of d27.
D27 Encodes a Novel Iron-Containing Protein
Sequence analysis of 59- and 39-rapid amplification of cDNA
ends (RACE) products indicated that the full length of D27 cDNA
is 1254-bp long, with anORF of 837 bp, a 217-bp 59-untranslatedregion, and a 200-bp 39-untranslated region (see Supplemental
Figure 2 online). Sequence comparison between genomic DNA
and cDNAs revealed that D27 is composed of seven exons that
encodes a 278–amino acid polypeptide (Figure 2C; see Supple-
mental Figure 2 online). The 4-bp deletion in d27 results in a
premature translational product (Figure 3A; see Supplemental
Figure 2 online). The BLASTP (Altschul et al., 1997) analysis
revealed that D27 shares no homology with any functionally
identified protein and contains no conserved domain. However,
analysis of multiple alignment against the National Center for
Biotechnology Information database and The Institute for Ge-
nomic Research (TIGR) plant transcript assemblies showed that
D27 has homologies in many plant species, from lower plants to
higher plants (see Supplemental Figure 3 online), suggesting that
D27 may play a basic role in plants.
Interestingly, when we tried to express and purify recombinant
D27, we found that the bacterial cells expressing the maltose
Figure 2. Map-Based Cloning of D27.
(A) The D27 locus was mapped on the long arm of chromosome 11
between markers C189 and RM206.
(B) A BAC contig spanning the D27 locus. The numerals indicate the
number of recombinants identified from 5300 F2 mutant plants. BAC1,
AC137588; BAC2, AC104847; BAC3, AC136148; BAC4, AC146334.
(C) Fine-mapping of D27 with markers developed based on the
AC136148 sequence. The D27 gene was narrowed to an 18-kb genomic
DNA region between CAPS markers P3 and P6 and cosegregated with
marker P5. LOC_Os11g37650 is the candidate for D27.
(D) The complementation plasmid containing the entire D27 (pD27C).
(E) Phenotypic comparison among Nipponbare, d27-Nipponbare, and
the transgenic line harboring pD27C. Bar = 5 cm.
D27, a New Member of the MAX Pathway 1515
Dow
nloaded from https://academ
ic.oup.com/plcell/article/21/5/1512/6095307 by guest on 31 July 2021
binding protein (MBP)-D27 fusion protein were strikingly brown
in color, as was the purified MBP-D27 fusion protein (Figure 3B).
This result suggested that D27 is very likely to have a cofactor. To
explore this possibility, we analyzed the recombinant D27 with
inductively coupled plasma mass spectrometry (ICP-MS) and
found that the recombinant MBP-D27 protein contains ;1.7
mole of iron permole of protein, in contrast with an extremely low
level of iron bound to the C-terminal truncated polypeptide,
MBP-D271-187 (Figure 3C, Table 1), which is equivalent to the
mutated form of D27. The binding of iron to D27 was further
confirmed by characterizing the absorbtion spectrum of the
MBP-D27 fusion protein, which showed a specific peak at 420
nm, a characteristic for the presence of iron (Figure 3D). Fur-
thermore, when the recombinant MBP-D27 protein was treated
with the reducing agent dithionite, the peak at 420 nm exhibited a
dramatic decrease (Figure 3D), indicating that D27 is indeed an
iron-containing protein. Moreover, the purified recombinant
D27 protein contained no significant amount of other metals
(Table 1), suggesting that the binding of iron to D27 is specific.
Taken together, all these results indicate that D27 is an authentic
iron-containing protein in plants.
Expression Patterns of D27 and Subcellular Localization of
the D27 Protein
Real-time PCR analysis revealed that the D27 expression level is
high in axillary buds and young panicles, medium in shoot bases
and culms, and low in roots, sheaths, and leaves (Figure 4A). The
tissue-specific expression pattern of D27 was further examined
using mRNA in situ hybridization. D27 was predominantly ex-
pressed in young leaves (Figure 4B), axillary buds (Figure 4C),
inflorescence promodia (Figure 4D), lateral roots (Figure 4E), and
crown roots (Figure 4H). Furthermore, D27 expression was
detected in vascular cells at the shoot apex of the main stem
and young leaves (Figures 4F and 4I), in the nodal vascular
anastomosis (Figure 4G), and in large and small vascular bundles
of the internodes (Figure 4J).
To determine the subcellular localization of the D27 protein, we
performed a transient expression experiment of D27 in rice leaf
protoplasts. The C terminus of D27 was fused with green
fluorescent protein (GFP) under the control of cauliflower mosaic
virus (CaMV) 35S promoter, and the construct was transferred
into rice leaf protoplasts by the polyethylene glycol–mediated
method. In contrast with the control, which was ubiquitous in
protoplast cells, the D27-GFP fusion protein was predominantly
localized in chloroplasts (Figure 4K).
Enhanced Polar Auxin Transport in d27
Shoot branching has been reported to be correlated to polar
auxin transport (PAT) in Arabidopsis and pea (Morris, 1977;
Beveridge et al., 2000; Bennett et al., 2006; Dai et al., 2006). We
therefore investigated whether D27 is involved in PAT in rice. By
comparing the basipetal and acropetal IAA transport in upper-
most internodes between thewild-type and d27 plants, we found
that basipetal PAT in d27 was significantly elevated, whereas
acropetal PAT of 3H-IAA and basipetal transport of 3H-IAA
treated with the PAT inhibitor N-1-naphthylphtalamic acid
(NPA) showed no significant difference between the wild-type
and mutant plants (Figure 5A).
To investigate whether the increased auxin transport is related
to the d27 mutant phenotype, we further examined the effect of
NPA on d27 seedlings in hydroponic culture. Two-week-old
seedlings were treated with various concentrations of NPA. As
shown in Figures 5B and 5C, the tiller number of d27 mutant
plants was largely rescued when grown in the presence of 1.5
mM NPA for 5 weeks. Furthermore, when 2-week-old wild-type
and d27 seedlings were treated with as low as 0.5 mM NPA, the
Figure 3. Characterization of the D27 Protein.
(A) Schematic representation of D27 and D271-187 (premature D27).
(B) Escherichia coli strains (top panel) expressing MBP-D27 and
MBP-D271-187 and purified MBP-D27 and MBP-D271-187 proteins
(bottom panel), showing the brown color of D27 proteins.
(C) Iron contents bound to MBP, MBP-D27, and MBP- D271-187. Values
are means 6 SE of three independent experiments.
(D) UV visible absorbance spectra of purified MBP-D27 and MBP-
D271-187 proteins before (blue and red) and after (purple and green)
reduction with dithionite.
Table 1. Metal Contents of MBP-D27 Protein Determined by
ICP-MS Analysis
Metal
Moles of Metal per Mole of Protein
MBP MBP-D27 MBP-D271-187
Iron 0.01 6 0.01 1.74 6 0.04 0.17 6 0.01
Calcium 0.55 6 0.03 0.46 6 0.01 0.49 6 0.01
Chromium 0.01 6 0.01 0.03 6 0.01 0.02 6 0.01
Copper 0.01 6 0.01 0.02 6 0.01 0.02 6 0.01
Nickel 0.01 6 0.01 0.01 6 0.01 0.01 6 0.01
Magnesium <0.001 <0.001 <0.001
Manganese <0.001 <0.001 <0.001
Zinc <0.001 <0.001 <0.001
Values are means 6 SE of three independent experiments.
1516 The Plant Cell
Dow
nloaded from https://academ
ic.oup.com/plcell/article/21/5/1512/6095307 by guest on 31 July 2021
Figure 4. Expression Patterns of D27 and Subcellular Localization of the D27 Protein.
D27, a New Member of the MAX Pathway 1517
Dow
nloaded from https://academ
ic.oup.com/plcell/article/21/5/1512/6095307 by guest on 31 July 2021
outgrowth of tiller buds of the wild type was significantly pro-
moted, which is consistent with the long-established concept
that too little auxin transport also leads to an increased shoot
branching (Chatfield et al., 2000). By contrast, the treatment of
NPA showed a remarkable inhibition to the tiller outgrowth of the
d27 seedlings, suggesting that the tillering phenotype of d27may
be correlated with an enhanced PAT.
D27 May Function through the MAX/RMS/D Pathway
In rice, one class of tillering dwarf mutants with an increased tiller
number and reduced plant height has been previously reported
(Kinoshita and Takahashi, 1991). Among them, d3,d17/htd1, and
d10 are found to function as their orthologs of MAX2/RMS4,
MAX3/RMS5, and MAX4/RMS1/DAD1 in Arabidopsis, pea, and
Petunia, respectively (Stirnberg et al., 2002; Sorefan et al., 2003;
Booker et al., 2004; Foo et al., 2005; Ishikawa et al., 2005;
Snowden et al., 2005; Johnson et al., 2006; Zou et al., 2006; Arite
et al., 2007). The phenotype of d27 and the involvement ofD27 in
PAT prompted us to test whether D27 is a new member of the
MAX/RMS/D pathway in rice. We therefore generated a d27 d10
double mutant and compared the phenotypes of single and
double mutants of d27, d10, and d27 d10. As shown in Figure 6,
d10 exhibits similar phenotype to d27, but has more tillers and a
more severe dwarf stature than d27 (Figures 6A and 6B). Phe-
notypic analysis revealed that the d27 d10 double mutant
showed similar tiller number and plant height to d10 (Figures
6A to 6D). Further investigation on the responses of d27, d10,
and d27 d10 to the treatment of different NPA concentrations
indicated that the d27 d10 double mutant has a similar response
to d10 (Figures 6E and 6F). These results strongly suggested that
D27 participates in the MAX/RMS/D pathway.
D27 Participates in the Biosynthesis of Strigolactones
Recent studies have shown that the proposed novel hormones
that inhibit plant branching and are derived from theMAX/RMS/D
pathway are strigolactones or their downstream metabolites.
MAX1, MAX3/RMS5/D17, and MAX4/RMS1/D10 are involved in
the biosynthesis of strigolactones, while MAX2/RMS4/D3 is
involved in strigolactone signaling (Gomez-Roldan et al., 2008;
Umehara et al., 2008). To further understand the role ofD27 in the
MAX/RMS/D pathway in rice, we investigated whether d27 is
deficient in strigolactone production or signaling. By applying 1.0
mM GR24, a synthetic strigolactone analog that acts as native
strigolactones, to wild-type and d27 seedlings in a hydroponic
culture, we found that the exogenous supplement of GR24 was
able to fully inhibit tiller bud outgrowth of 3-week-old d27
seedlings (Figure 7A), and continuous treatment for 7 weeks
fully restored the tillering dwarf phenotype of d27 (Figure 7B).
We further analyzed and compared the strigolactones pro-
duced in the root exudates of wild-type and d27 seedlings by
liquid chromatography–quadruple/time-of-flight tandem mass
spectrometry (LC/MS-MS). Our results clearly showed that
29-epi-5-deoxystrigol (epi-5DS), an identified strigolactone in
the hydroponic culture media of rice seedlings, was produced in
the wild-type cultivar Shiokari root exudates but was undetect-
able in d27 (Figure 7C). Moreover, we performed a highly
sensitive germination assay using Orobanche minor seeds to
estimate the strigolactone production in d27 root exudates. In
agreement with LC/MS-MS data, the germination-stimulating
activity of d27 root exudates dramatically decreased in compar-
ison with the wild type (Figure 7D; see Supplemental Figure 4
online). These results indicate that D27 is required for the
production of strigolactones in rice.
DISCUSSION
In higher plants, the degree and pattern of branching are major
determinants of plant architecture. Although there has been
significant progress in the characterization of branching mutants
and the understanding of corresponding regulatory genes has
been achieved recently, the molecular mechanisms underlying
plant branching remain to be elucidated. A rice tiller is a spe-
cialized grain-bearing branch that grows independently of the
main culmby its own adventitious roots. Tillering in rice is not only
an important agronomic trait for grain yield, but also an ideal
system for studying branching in higher plants, especially for
monocotyledonous species. In this article, we reported the
cloning of D27 and functional characterization of its mechanism
underlying the axillary tiller development, showing that D27
suppresses the outgrowth of tiller buds by producing strigolac-
tones.
D27 Is a Novel Iron binding Protein That Localizes
in Chloroplasts
Although the bioinformatic analysis shows that D27 encodes a
novel protein with no homology to any functionally known
Figure 4. (continued).
(A) D27 expression levels revealed by real-time PCR in various organs, including roots (R), culms (C), sheaths (Sh), leaves (L), panicles (P), shoot bases
(SB), and axillary buds (AB). Values are means 6 SE of three independent experiments.
(B) to (J) D27 expression patterns revealed by mRNA in situ hybridization. The cross sections of the vegetative shoot apexes show the expression of
D27 in young leaves (B) and axillary buds (C). The longitudinal section of an inflorescence meristem at the secondary branch differentiation stage shows
the expression of D27 in the inflorescence promodia (D). The cross sections of roots show the D27 expression in lateral roots (E) and the steles of crown
roots (H). The cross sections of the unelongated stem internodes ([F] and [I]), nodes (G), and internodes (J) of elongated culms indicate the expression
of D27 in vasculature tissues. (I) is the magnification image of the squared region in (F). Arrows indicate the expression sites of D27. YL, young leaf; LS,
leaf shealth; AB, axillary bud; IF, inflorescence; SA, shoot apex; NV, nodal vascular anastomosis; LR, lateral root; LB, large vascular bundle; SB, small
vascular bundle; ST, stele. Bars = 100 mm in (B) to (E) and (H) and 200 mm in (F), (G), (I), and (J).
(K) Subcellular localization of 35S:GFP (top panel) and 35S:D27-GFP (bottom panel) in rice protoplast cells. Bars = 5 mm.
1518 The Plant Cell
Dow
nloaded from https://academ
ic.oup.com/plcell/article/21/5/1512/6095307 by guest on 31 July 2021
proteins, D27 homologs are found from algae (cyanophyta) to
higher plants, but not in animals or fungi (see Supplemental
Figure 3 online), suggesting that D27 may be a plant-specific
protein. Analysis of the transient expression in rice protoplasts
demonstrates that the D27 protein is localized in chloroplasts,
similar to MAX3 and MAX4/D10 (Booker et al., 2004; Auldridge
et al., 2006; Arite et al., 2007).
Our data also showed that D27 is an iron-containing protein
and that the truncated D27 loses the ability to bind iron (Figure
3C). Bacterial cells expressing truncated MBP-D271-187 are
colorless, and the purified protein does not have a 420-nm
peak. By contrast, the full-length MBP-D27 fusion protein is
Figure 5. Comparison of PAT and Tillering Responses upon NPA
Treatments between Wild-Type and d27 Plants.
(A) Comparison of PAT between the wild type (Shiokari) and d27 in the
uppermost internodes. The acropetal auxin transport measurement is
used as a negative control. Values are means 6 SE of three independent
experiments. The asterisk represents significance difference between
the wild type (Shiokari) and d27 determined by the Student9s test at
P < 0.05.
(B) The phenotypic comparison between wild-type (ZF802) and d27
plants upon 5-week 1.5 mM NPA treatment. Bar = 5 cm.
(C) Comparison of tillering upon 5-week NPA treatment between wild-
type (ZF802) and d27 seedlings. Each value represents the mean6 SE of
15 seedlings.
Figure 6. Phenotypic Analyses of the d27 d10 Double Mutant.
(A) and (B) Phenotypes of wild-type, d27, d10, and d27 d10 at the
seeding stage (A) and at the heading stage (B). Red, white, and blue
arrows indicate first, second, and third tillers, respectively. Bars = 2 cm in
(A) and 10 cm in (B).
(C) Kinetic tillering analyses of d27, d10, and d27 d10 plants at different
developmental stages. DAG, days after germination. Each value repre-
sents the mean 6 SE of 15 seedlings.
(D) Dwarf phenotype of d27, d10, and d27 d10 plants. Internode length
was measured after harvest. P, panicle; I to IV, nodes numbered from top
to bottom. Each value represents the mean 6 SE of 15 seedlings.
(E) and (F) Comparison of tiller number (E) and plant height (F) of
13-week-old plants in response to NPA treatment at various concentra-
tions. Each value represents the mean 6 SE of 15 seedlings.
D27, a New Member of the MAX Pathway 1519
Dow
nloaded from https://academ
ic.oup.com/plcell/article/21/5/1512/6095307 by guest on 31 July 2021
brown and has the characteristic absorbance at 420 nm (Figures
3B and 3D), suggesting that the C terminus of D27 may contain
an iron binding domain.
D27 Suppresses the Outgrowth of Rice Tiller Buds through
the MAX Pathway
The development of shoot branching occurs in two steps, the
initiation of the AM and the outgrowth of axillary buds. Unlike
the elusivemolecular mechanism that regulates AM initiation, the
outgrowth of axillary buds is well understood due to the recent
breakthrough in theMAX/RMS/D pathway. Studies on a number
of mutants that display excess axillary branches, max in Arabi-
dopsis (Stirnberg et al., 2002, 2007; Sorefan et al., 2003; Booker
et al., 2004), rms in pea (Beveridge et al., 1994, 1996, 2000; Foo
et al., 2001, 2005; Morris et al., 2001; Sorefan et al., 2003), and
dad in petunia (Napoli, 1996; Snowden et al., 2005; Simons et al.,
2007), have revealed the existence of a carotenoid-derived AM
outgrowth regulating pathway. Although the outgrowth behav-
iors between dicotyledonous and monocotyledonous axillary
buds are different (for reviews, see McSteen and Leyser, 2005;
Wang and Li, 2008), they appear to share a conserved branching
signal pathway because orthologs of MAX2/RMS4, MAX3/
RMS5, and MAX4/RMS1 have also been identified in rice; they
are D3, HTD/D17, and D10, respectively (Ishikawa et al., 2005;
Zou et al., 2006; Arite et al., 2007). Rice plants harboring
individual loss-of-function mutations in these genes lead to
more tillers and reduced plant height, a similar phenotype to
those in Arabidopsis and pea, indicating their conserved func-
tions in suppressing branch development in monocotyledonous
plants.
The more tillers phenotype of d27 is ascribed to the extensive
outgrowth of tiller buds, especially to the higher-order tiller buds,
which are dormant in the wild-type plants (Figures 1A to 1F). The
comparable morphology of d27 to that of the rice tillering dwarf
mutant d3, htd1/d17, or d10 prompted us to test the hypothesis
that D27 is also involved in the MAX/RMS/D pathway. The
analysis of the double mutant d27 d10 confirms the hypothesis.
In the phenotypes tested, including tillering behavior, plant
height, and response to NPA treatment, d27 d10 resembles
d10 (Figure 6), suggesting that D27 may function the same as
D10 in the MAX/RMS/D pathway. In agreement with this, D27 is
expressed in roots and shoots, especially in the vasculature
tissue of the plants (Figures 4B to 4J), an expression pattern
similar to those of D10 and HTD1/D17. These results are con-
sistent with a role in the biosynthesis of strigolactones. Further
determination of strigolactone-related products in d27 and d10
will facilitate the understanding of the genetic relationship be-
tween D27 and D10.
D27 Is Required for the Biosynthesis of Strigolactones
The MAX/RMS/D pathway has been proven to interact with
classic plant hormones auxin and cytokinin, but all the evidence
obtained so far has demonstrated that the MAX/RMS/D
-dependent branching signals are not attributed to any known
hormones. Recent studies uncover the role of strigolactones
or their metabolites acting as a new class of branching hor-
mones, the signal derived from the MAX/RMS/D pathway
Figure 7. Analysis of Strigolactones in Wild-type and d27 Plants.
(A) Three-week-old wild-type (Shiokari) and d27 seedlings treated with
(bottom panel) or without (top panel) 1.0 mMGR24. Red and white arrows
indicate first and second tillers, respectively. Bars = 1.0 cm.
(B) Seven-week-old wild-type and d27 seedlings treated with (bottom
panel) or without 1.0 mM (top panel) GR24. Red and white arrows indicate
first and second tillers, respectively. Bars = 5.0 cm.
(C) LC-MS/MS chromatograms for the standard epi-5DS (top trace) and
root exudates from wild-type (middle trace) and d27 (bottom trace)
seedlings. Arrows indicate the detection of epi-5DS.
(D) Germination rate of O. minor seeds 5 d after treatments with water,
GR24, or extracts of wild-type or d27 root exudates. Each value
represents the average of three replicates 6 SE.
1520 The Plant Cell
Dow
nloaded from https://academ
ic.oup.com/plcell/article/21/5/1512/6095307 by guest on 31 July 2021
(Gomez-Roldan et al., 2008; Umehara et al., 2008). Although
previous studies have shown that strigolactones are derived
from the carotenoid pathway and function as important signals
in establishing the interaction between plants and mycorrhizal
fungi (Akiyama et al., 2005; Matusova et al., 2005), the biosyn-
thetic and signaling pathways of strigolactones are poorly
understood. MAX1, MAX3/RMS5/D17, and MAX4/RMS1/D10
are essential components for the biosynthesis of strigolac-
tones, whereas MAX2/RMS4/D3 is involved in the perception of
the signal. Our studies provide direct evidence that D27 is a new
component of the MAX/RMS/D pathway and plays an essential
role in biosynthesizing strigolactones. First, the d27 phenotype
can be restored to the wild type upon supplemention with GR24
(Figures 7A and 7B). Second, the d27 root extract contains
undetectable strigolactone, which is normally produced in the
wild-type root extract (Figure 7C). Third, unlike thewild type, the
d27 root exudates failed to stimulate the seed germination ofO.
minor (Figure 7D; see Supplemental Figure 4 online). Based on
the findings that the D27 protein is localized in chloroplasts and
contains iron and the fact that the complex structure of
strigolactones should undergo a number of enzymatic reac-
tions, including hydroxylation, epoxydation, oxidation, etc., to
achieve its biosynthesis (Matusova et al., 2005), we hypothesize
that D27 may participate in a redox reaction involved in the
biosynthesis of strigolactones. Further biochemical experi-
ments are required to confirm this possibility in the future.
Roles of Strigolactones and Auxin in Regulating
Shoot Branching
The discovery of strigolactones as a product of the MAX/RMS/D
pathway provides an opportunity to elucidate mechanisms of
shoot branching in higher plants. Currently, how strigolactones
and auxin interact to regulate shoot branching is still vague, and
two models have been proposed based on different experimen-
tal systems. One is the PAT hypothesis, which proposes that the
MAX/RMS/D pathway acts by regulating PIN-dependent auxin
transport in the stem, which inhibits auxin transport from buds
(Bennett et al., 2006; Ongaro and Leyser, 2008; Leyser, 2009).
The other proposes that strigolactones function as secondary
messengers of auxin that repress the bud outgrowth directly
(Beveridge et al., 2000; Brewer et al., 2009; Ferguson and
Beveridge, 2009). Our work on the rice tillering mutant d27 has
revealed that the mutation in D27 leads to a deficiency in
strigolactone biosynthesis and an increase in PAT, which are
consistent with previous studies on Arabidopsis and pea
(Beveridge et al., 2000; Bennett et al., 2006). However, it is still
unclear whether the enhanced PAT is a direct consequence or a
feedback effect of the deficiency in strigolactones. Moreover, it
should be pointed out that, in contrastwith the complete rescue of
the mutant phenotypes by the treatment with GR24 (Figure 7), the
dwarf phenotype of d27 is completely recovered to the wild type
by treatment with NPA (Figures 5B and 5C). These results suggest
that the action of strigolactones or auxin may not be in a simple
linear pathway. A full elucidation of the actions of strigolactones
and their interactions with auxin and other branching signals
awaits the identification of more novel MAX/RMS/D-dependent
branching mutants and corresponding inhibiting signals.
METHODS
Plant Materials
The d27 mutant is in a Shiokari background. In this study, we also
generated d27-ZF802 and d27-Nipponbaremutants by backcrossing the
d27 mutant plants with indica cultivar ZF802 and japonica variety
Nipponbare. The d10 mutant also has a Shiokari background. The d27
and d10 mutants were provided by Takamure Itsuro of Hokkaido Uni-
versity. Rice (Orzya sativa) plants were cultivated in the experimental field
at the Institute of Genetics and Developmental Biology in Beijing in the
natural growing seasons. For NPA (at indicated concentrations) and 1mM
GR24 treatment, germinated seeds were grown on a nylon net floating on
hydroponic solution in the greenhouse.
Mapping of D27
To map the D27 locus, the d27-ZF802 mutant was crossed to the wild
type (ZF802), and the genomic DNA from 5200 F2 progeny with the
mutant phenotype was extracted with a modified CTAB method de-
scribed previously (Mou et al., 2000). To fine-mapD27, the CAPSmarkers
were generated based on single nucleotide polymorphisms identified in
the sequence. The molecular lesion of d27-ZF802 was identified by PCR
amplification of the D27 genomic region from the wild-type and d27-
ZF802 mutant plants and comparison of their sequences using ClustalW
within Lasergene version 5.0 software (DNASTAR). The primer sequences
are listed in Supplemental Table 1 online.
Complementation of d27
The BAC clone OSJNBa0029K08 was digested with BamHI and KpnI to
generate a 9.25-kb genomic DNA fragment. The DNA fragment was
ligated to the BamHI and KpnI digested pCAMBIA1300 vector (CAMBIA),
forming pD27C,which contains a 2236-bp upstream sequence, the entire
D27 gene, and a 2044-bp downstream region. The pD27C plasmid was
introduced into Agrobacterium tumefaciens EHA105 by electroporation,
and the rice d27-Nipponbare mutant was transformed according to a
published method (Hiei et al., 1994). The phenotype was scored in T1
transformants and T2 progeny.
RT-PCR, RACE-PCR, and Real-Time PCR Analyses
Total RNA was prepared using a TRIzol kit according to the user manual
(Invitrogen). One microgram of total RNA was treated with DNase I and
used for cDNA synthesis with an RT kit (Promega). The 59- or 39-RACE of
D27 was performed using a SMART RACE cDNA amplification kit
according to the manufacturer’s instructions (Clontech). Real-time PCR
experiments were performed using gene-specific primers in a total
volume of 10 mL with 1 mL of the RT reactions, 1 mM gene-specific
primers D27EF and D27ER, and 5 mL SYBR Green Master mix (Applied
Biosystems) on anABI 7900 real-timePCRmachine (Applied Biosystems)
according to themanufacturer’s instructions. The riceUbiquitin gene was
used as the internal control. The relative expression levels of D27 in
various organs were compared with that in the root, after normalization
with Ubiquitin transcript and averaged from three biological replicates.
The primer sequences used for the above studies are listed in Supple-
mental Table 2 online.
Histological Analysis and mRNA in Situ Hybridization
Tissues of rice were fixed with 4% (w/v) paraformaldehyde at 48C
overnight, followed by a series of dehydration and infiltration, and
embedded in paraffin (Paraplast Plus; Sigma-Aldrich). The tissues were
sliced into 8- to 10-mmsectionswith amicrotome (Leica RM2145), affixed
D27, a New Member of the MAX Pathway 1521
Dow
nloaded from https://academ
ic.oup.com/plcell/article/21/5/1512/6095307 by guest on 31 July 2021
to microscope slides, and stainedwith Safranin O and Fast Green (Fisher)
according to Ruzin (1999). Sections were observed under bright field
through a microscope (Leica DMR) and photographed using a Micro
Color CCD camera (Apogee Instruments).
To investigate the morphology of the leaf blade epidermal cells,
samples were cleared in benzyl-benzoate-four-and-half fluid as previ-
ously described (Herr, 1982).
RNA in situ hybridization was performed as described previously (Li
et al., 2007) with minor modification. Briefly, the 14- to 760-bp region of
the D27 gene was amplified by gene-specific primers D27IF and D27IR
with BamHI and KpnI adaptors (see Supplemental Table 2 online) and
subcloned into the BamHI- and KpnI-digested pBluescript II SK+ vector
(Stratagene). The construct was used as the template to generate sense
and antisense RNA probes. Digoxigenin-labeled RNA probes were pre-
pared using a DIG Northern Starter Kit (Roche) according to the manu-
facturer’s instructions. Slides were observed under bright field through a
microscope (Leica DMR) and photographed with a Micro Color CCD
camera (Apogee Instruments).
Subcellular Localization of D27
To generate CaMV35S-GFP, aHindIII-NotI fragment containingGFPwas
amplified by primers GFPF and GFPR (see Supplemental Table 2 online)
using CaMV35S-sGFP (S65T)-NOS-39 cassette vector (Niwa et al., 1999).
The resultant fragment was cloned into the pET28a (Novagen) vector to
generate pET28a-GFP. The b-glucuronidase fragment of the pBI221
vector (Clontech) was replaced by the BamHI-NotI fragment of pET28a-
GFP to generate theCaMV35S-GFP construct. ABamHI-HindIII fragment
containing the coding region of D27 amplified by the primers D27F and
D27R (see Supplemental Table 2 online) was subcloned into the BamHI
and HindIII sites of CaMV35S-GFP to generate CaMV35S:D27-GFP. The
plasmids CaMV35S-GFP and CaMV35S:D27-GFP were introduced into
rice leaf protoplasts as described (Bart et al., 2006). After overnight
incubation in the dark, the GFP signal and chlorophyll autofluorescence
were examined under a confocalmicroscope at excitationwavelengths of
488 and 647 nm, respectively (FluoView 1000; Olympus).
PAT Assay
The PATwas assayed according to themethod described previously with
some minor modifications (Okada et al., 1991; Li et al., 2007). Briefly, the
apical or basal ends of the 20-mm excised segments from the uppermost
internode at the early heading stage (for basipetal or acropetal transport
assays, respectively) were incubated in 10 mL of half-strength Murashige
and Skoog liquid medium containing 0.35% phytogel and 0.1 mM3H-labeled IAA (American Radiolabeled Chemicals) in 1.5-mL Eppendorf
tubes in the dark at room temperature. NPA (10 mM) was added to the
mediumas indicated to block IAA active transport so that the IAA diffusion
levels could be compared between wild-type and mutant plants. After a
3-h incubation, 5-mm sections from the nonsubmerged ends of seg-
ments were excised and transferred into Eppendorf tubes containing 2
mL of scintillation liquid. After an 18-h incubation in 2 mL of scintillation
liquid, the radioactivity of each tube was counted by a liquid scintillation
counter (1450 MicroBeta TriLux; Perkin-Elmer).
Expression and Purification of MBP-D27 Fusion Proteins in
Escherichia coli
The D27 cDNAs corresponding to full length and amino acids 1 to 187
were each amplified by the primer sets listed in Supplemental Table 2
online and cloned into the EcoRI andBamHI sites of the E. coli expression
vector pMAL-c2 (New England Biolabs). Expression of MBP, MBP-D27,
and MBP-D271-187 in BL21 Rosetta cells (Stratagene) was induced with
0.1 mM isopropyl-1-thio-D-galactopyranoside at 168C for 18 h. Fusion
proteins were purified using amylose-affinity chromatography (New
England Biolabs) according to the manufacturer’s protocols and quan-
tified by the Bio-Rad protein assay reagent.
Metal Quantitation
The purified recombinant MBP, MBP-D27, and MBP-D271-187 proteins
were digested with 40% nitric acid on a heating block, after cooling the
metal contents of the digests were determined using a Thermo ICP-MS
XII. The optical spectra of recombinant D27-MBP and MBP-D271-187(;10 to 20 mg/mL protein in 50 mM Tris, pH 8.0, and 50 mM NaCl) were
measured from the near UV to the near IR (200 to 800 nm) on a Beckman
Coulter DU800. Chemical reduction of D27-MBP and MBP-D271-187proteins was achieved by adding 2 mM dithionite to the protein solution.
LC/MS-MS Analysis of epi-5DS and Germination Assay of
Orobanche minor
The strigolactone epi-5DS measurement and the O. minor germination
assay were performed according to the method described by Yoneyama
et al. (2008). The hydroponic culture media were collected and extracted
twice with ethyl acetate. The ethyl acetate phase was washed with 0.2 M
K2HPO4, dried over anhydrous Na2SO4, and concentrated in vacuo. The
extracts were dissolved in 50% (v/v) acetonitrile and were subjected to
LC/MS-MS analysis using a system consisting of a triple quadruple
tandem mass spectrometer (Quattro Premier XE; Waters MS Technolo-
gies) and an Acquity Ultra Performance Liquid Chromatograph (Acquity
UPLC;Waters) equippedwith a reverse phase column (BEH-C18, 2.13 50
mm, 1.7 mm; Waters). The mobile phase was changed from 30% (v/v)
acetonitrile to 40% and 70% (v/v) linearly in 6 and 15 min after the
injection, respectively, at a flow rate of 0.4 mL min21. The column
temperature was set to 258C. MS parameters were set to the following
values: desolvation gas flow 800 L·h21, capillary voltage 3800 V, cone
voltage 30 V, desolvation temperature 3508C, source temperature 1208C,
collision energy 15 V, using MRM 331.16 > 216.10 transition for the epi-
5DS detection, and 5 pg/mL epi-5DS in 50% (v/v) acetonitrile was used as
reference for the qualification of epi-5DS in the root exudate sample.
To obtain strigolactone-containing exudates for germination assays,
the 1.5 liters of hydroponic culture media were concentrated using Oasis
HLB columns (Waters) and eluted with 5 mL acetone. The exudates for
each bioassay were prepared by mixing 100 mL of the concentrated
eluates in acetone and 900 mL of water and evaporating the acetone in a
vacuum centrifuge. Deionized water and GR24 were used as negative
and positive controls, respectively.
Accession Numbers
The GenBank accession number for the rice Dwarf27 sequence reported
in this article is FJ641055. Sequence data from this article can be found in
the GenBank database and TIGR plant transcript assemblies database
(boldfaced) under the following accession numbers or plant TA identifier.
GenBank identification numbers and TIGR numbers are as follows:
Acaryochloris marina (Am): YP_001515237.1; Arabidopsis thaliana
(At): NP_680560.1; NP_564838.1; NP_973748.1; NP_563673.1;
TA47796_3702; Chlamydomonas reinhardtii (Cr): XP_001702558.1;
XP_001697941.1; Fragaria vesca (Fv): DY667171; Glycine max (Gm):
BI470614; Lactuca perennis (Lp): DW093521; Manihot esculenta (Me):
TA7061_3983; Medicago truncatula (Mt): TA29020_3880; Ostreococcus
lucimarinus (Ol): XP_001420448.1; XP_001421321.1; XP_001419261.1;
XP_001420823.1; Oryza sativa (Os): NP_001060847.1 (Os08g0114100);
NP_001054553.1 (Os05g0131100); EAZ41303.1 (OsJ_25811); D27,
ABA94460.1; EEC68482.1; EAY81567.1 (OsI_36731); EEC78459.1
(OsI_18326); Ostreococcus tauri (Ot): CAL57302.1; CAL55718.1;
CAL57640.1; CAL54767.1; Physcomitrella patens (Pp): XP_001755220.1;
1522 The Plant Cell
Dow
nloaded from https://academ
ic.oup.com/plcell/article/21/5/1512/6095307 by guest on 31 July 2021
XP_001752784.1; XP_001763276.1; XP 001,763,362.1; XP_
001767010.1; Picea sitchensis (Ps): ABK22858.1; ABK23534.1;
Phaeodactylum tricornutum (Pt): EEC48282.1; EEC51126.1; Selaginella
moellendorffii (Sm): DN838054; Synechococcus sp PCC 7335 (Sy):
YP_002711663.1; Triticum aestivum (Ta): TA111626_4565; Thermosyne-
chococcus elongates (Te): NP_682732.1; Taraxacum officinale (To):
DY820710; TA1119_50225; Triphysaria versicolor (Tv): DR172918;
TA4072_64093; Vitis vinifera (Vv): CAO40130.1; CAO62908.1;
CAO22611.1; Zea mays (Zm): NP_001144840.1; ACG26781.1;
ACG28622.1; Zingiber officinale (Zo): TA7516_94328.
Supplemental Data
The following materials are available in the online version of this article.
Supplemental Figure 1. Comparison of Tiller Bud Formation be-
tween the Wild Type and d27.
Supplemental Figure 2. D27 cDNA Sequence and Its Deduced
Amino Acid Sequence.
Supplemental Figure 3. Multiple Sequence Alignment of the De-
duced Amino Acid Sequence of D27 with Its Homologs.
Supplemental Figure 4. Germination of O. minor Seeds 5 d after
Treatment with Root Exudate Extracts of Shiokari, d27, d10, Water
(Negative Control), or GR24 (Positive Control).
Supplemental Table 1. List of PCR-Based Molecular Markers
Developed in This Study.
Supplemental Table 2. Primer Sequences Used for D27 Analyses.
ACKNOWLEDGMENTS
We thank Zhijie Liu and Neil Shaw (Institute of Biophysics, Chinese
Academy of Sciences) for advice on protein purification, Jindong Zhao
(Institute of Hydrobiology, Chinese Academy of Sciences, and Peking Uni-
versity) for suggestions on protein analysis, Takamure Itsuro (Hokkaido
University) for providing d27 and d10 mutants, and Dun Li (Stony Brook
University) for the improvement of the English language. We also thank
Koichi Yoneyama and Xiaonan Xie (Utsunomiya University) for sharing
information on strigolactone analysis and kindly providing GR24 and
Kohki Akiyama (Osaka Prefecture University) for providing epi-5DS. This
work was supported by grants from the Ministry of Science and
Technology of China (2006AA10A101) and the National Natural Science
Foundation of China (90817108 and 30830009).
Received January 28, 2009; revised April 30, 2009; accepted May 7,
2009; published May 26, 2009.
REFERENCES
Akiyama, K., Matsuzaki, K., and Hayashi, H. (2005). Plant sesquiter-
penes induce hyphal branching in arbuscular mycorrhizal fungi. Na-
ture 435: 824–827.
Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J.H., Zhang, Z.,
Miller, W., and Lipman, D.J. (1997). Gapped BLAST and PSI-BLAST:
A new generation of protein database search programs. Nucleic Acids
Res. 25: 3389–3402.
Arite, T., Iwata, H., Ohshima, K., Maekawa, M., Nakajima, M.,
Kojima, M., Sakakibara, H., and Kyozuka, J. (2007). DWARF10,
an RMS1/MAX4/DAD1 ortholog, controls lateral bud outgrowth in
rice. Plant J. 51: 1019–1029.
Auldridge, M.E., Block, A., Vogel, J.T., Dabney-Smith, C., Mila, I.,
Bouzayen, M., Magallanes-Lundback, M., DellaPenna, D., McCarty,
D.R., and Klee, H.J. (2006). Characterization of three members of the
Arabidopsis carotenoid cleavage dioxygenase family demonstrates
the divergent roles of this multifunctional enzyme family. Plant J. 45:
982–993.
Bart, R., Chern, M., Park, C.J., Bartley, L., and Ronald, P.C. (2006). A
novel system for gene silencing using siRNAs in rice leaf and stem-
derived protoplasts. Plant Methods 2: 13.
Bennett, T., Sieberer, T., Willett, B., Booker, J., Luschnig, C., and
Leyser, O. (2006). The Arabidopsis MAX pathway controls shoot
branching by regulating auxin transport. Curr. Biol. 16: 553–563.
Beveridge, C.A., Ross, J.J., and Murfet, I.C. (1994). Branching mutant
rms-2 in Pisum sativum (grafting studies and endogenous indole-3-
acetic acid levels). Plant Physiol. 104: 953–959.
Beveridge, C.A., Ross, J.J., and Murfet, I.C. (1996). Branching in pea
(action of genes Rms3 and Rms4). Plant Physiol. 110: 859–865.
Beveridge, C.A., Symono, G.M., Murfet, I.C., Ross, J.J., and
Rameau, C. (1997). The rms1 mutant of pea has elevated indole-3-
acetic acid levels and reduced root-sap zeatin riboside content but
increased branching controlled by graft-transmissible signal(s). Plant
Physiol. 115: 1251–1258.
Beveridge, C.A., Symons, G.M., and Turnbull, C.G. (2000). Auxin
inhibition of decapitation-induced branching is dependent on graft-
transmissible signals regulated by genes Rms1 and Rms2. Plant
Physiol. 123: 689–698.
Booker, J., Auldridge, M., Wills, S., McCarty, D., Klee, H., and
Leyser, O. (2004). MAX3/CCD7 is a carotenoid cleavage dioxygenase
required for the synthesis of a novel plant signaling molecule. Curr.
Biol. 14: 1232–1238.
Booker, J., Chatfield, S., and Leyser, O. (2003). Auxin acts in xylem-
associated or medullary cells to mediate apical dominance. Plant Cell
15: 495–507.
Booker, J., Sieberer, T., Wright, W., Williamson, L., Willett, B.,
Stirnberg, P., Turnbull, C., Srinivasan, M., Goddard, P., and
Leyser, O. (2005). MAX1 encodes a cytochrome P450 family member
that acts downstream of MAX3/4 to produce a carotenoid-derived
branch-inhibiting hormone. Dev. Cell 8: 443–449.
Bouwmeester, H.J., Matusova, R., Zhongkui, S., and Beale, M.H.
(2003). Secondary metabolite signalling in host-parasitic plant inter-
actions. Curr. Opin. Plant Biol. 6: 358–364.
Brewer, P.B., Dun, E.A., Ferguson, B.J., Rameau, C., and Beveridge,
C.A. (2009). Strigolactone acts downstream of auxin to regulate bud
outgrowth in pea and Arabidopsis. Plant Physiol. 150: 482–493.
Chatfield, S.P., Stirnberg, P., Forde, B.G., and Leyser, O. (2000). The
hormonal regulation of axillary bud growth in Arabidopsis. Plant J. 24:
159–169.
Cline, M.G. (1991). Apical dominance. Bot. Rev. 57: 318–358.
Cook, C.E., Whichard, L.P., Wall, M.E., Egley, G.H., Coggon, P.,
Luhan, P.A., and McPhail, A.T. (1972). Germination stimulants. II.
The structure of strigol-a potent seed germination stimulant for
witchweed (Striga lutea Lour.). J. Am. Chem. Soc. 94: 6198–6199.
Dai, Y., Wang, H., Li, B., Huang, J., Liu, X., Zhou, Y., Mou, Z., and Li,
J. (2006). Increased expression of MAP KINASE KINASE7 causes
deficiency in polar auxin transport and leads to plant architectural
abnormality in Arabidopsis. Plant Cell 18: 308–320.
Eklof, S., Astot, C., Blackwell, J., Moritz, T., Olsson, O., and
Sandberg, G. (1997). Auxin-cytokinin interactions in wild-type and
transgenic tobacco. Plant Cell Physiol. 38: 225–235.
Eklof, S., Astot, C., Sitbon, F., Moritz, T., Olsson, O., and Sandberg, G.
(2000). Transgenic tobacco plants co-expressing Agrobacterium iaa
and ipt genes have wild-type hormone levels but display both auxin-
and cytokinin-overproducing phenotypes. Plant J. 23: 279–284.
D27, a New Member of the MAX Pathway 1523
Dow
nloaded from https://academ
ic.oup.com/plcell/article/21/5/1512/6095307 by guest on 31 July 2021
Ferguson, B.J., and Beveridge, C.A. (2009). Roles for auxin, cytokinin,
and strigolactone in regulating shoot branching. Plant Physiol. 149:
1929–1944.
Foo, E., Bullier, E., Goussot, M., Foucher, F., Rameau, C., and
Beveridge, C.A. (2005). The branching gene RAMOSUS1 mediates
interactions among two novel signals and auxin in pea. Plant Cell 17:
464–474.
Foo, E., Turnbull, C.G., and Beveridge, C.A. (2001). Long-distance
signaling and the control of branching in the rms1mutant of pea. Plant
Physiol. 126: 203–209.
Gomez-Roldan, V., et al. (2008). Strigolactone inhibition of shoot
branching. Nature 455: 189–194.
Herr, J.M. (1982). An analysis of methods for permanently mounting
ovules cleared in four-and-a-half type clearing fluids. Stain Technol.
57: 161–169.
Hiei, Y., Ohta, S., Komari, T., and Kumashiro, T. (1994). Efficient
transformation of rice (Oryza sativa L.) mediated by Agrobacterium
and sequence analysis of the boundaries of the T-DNA. Plant J. 6:
271–282.
Humphrey, A.J., and Beale, M.H. (2006). Strigol: Biogenesis and
physiological activity. Phytochemistry 67: 636–640.
Ishikawa, S., Maekawa, M., Arite, T., Onishi, K., Takamure, I., and
Kyozuka, J. (2005). Suppression of tiller bud activity in tillering dwarf
mutants of rice. Plant Cell Physiol. 46: 79–86.
Johnson, X., Brcich, T., Dun, E.A., Goussot, M., Haurogne, K.,
Beveridge, C.A., and Rameau, C. (2006). Branching genes are
conserved across species. Genes controlling a novel signal in pea
are coregulated by other long-distance signals. Plant Physiol. 142:
1014–1026.
Jung, J.H., Yun, J., Seo, Y.H., and Park, C.M. (2005). Characterization
of an Arabidopsis gene that mediates cytokinin signaling in shoot
apical meristem development. Mol. Cells 19: 342–349.
Kapchina-Toteva, V.V., van Telgen, H.J., and Yakimova, E. (2000).
Role of phenylurea cytokinin CPPU in apical dominance release in in
vitro cultured Rosa hybrida L. J. Plant Growth Regul. 19: 232–237.
Kinoshita, T., and Takahashi, M. (1991). The one hundredth report of
genetic studies on rice plant. J. Fac. Agric. Hokkaido Univ. 65: 1–61.
Lazar, G., and Goodman, H.M. (2006). MAX1, a regulator of the
flavonoid pathway, controls vegetative axillary bud outgrowth in
Arabidopsis. Proc. Natl. Acad. Sci. USA 103: 472–476.
Leyser, O. (2003). Regulation of shoot branching by auxin. Trends Plant
Sci. 8: 541–545.
Leyser, O. (January 2, 2009). The control of shoot branching: An
example of plant information processing. Plant Cell Environ. http://dx.
doi.org/10.1111/j.1365-3040.2009.01930.x.
Li, C., and Bangerth, F. (2003). Stimulatory effect of cytokinins and
interaction with IAA on the release of lateral buds of pea plants from
apical dominance. J. Plant Physiol. 160: 1059–1063.
Li, P., Wang, Y., Qian, Q., Fu, Z., Wang, M., Zeng, D., Li, B., Wang, X.,
and Li, J. (2007). LAZY1 controls rice shoot gravitropism through
regulating polar auxin transport. Cell Res. 17: 402–410.
Ljung, K., Bhalerao, R.P., and Sandberg, G. (2001). Sites and homeo-
static control of auxin biosynthesis in Arabidopsis during vegetative
growth. Plant J. 28: 465–474.
Lopez-Raez, J.A., Charnikhova, T., Gomez-Roldan, V., Matusova,
R., Kohlen, W., De Vos, R., Verstappen, F., Puech-Pages, V.,
Becard, G., Mulder, P., and Bouwmeester, H. (2008). Tomato
strigolactones are derived from carotenoids and their biosynthesis is
promoted by phosphate starvation. New Phytol. 178: 863–874.
Matusova, R., Rani, K., Verstappen, F.W., Franssen, M.C., Beale,
M.H., and Bouwmeester, H.J. (2005). The strigolactone germination
stimulants of the plant-parasitic Striga and Orobanche spp. are
derived from the carotenoid pathway. Plant Physiol. 139: 920–934.
McSteen, P., and Leyser, O. (2005). Shoot branching. Annu. Rev. Plant
Biol. 56: 353–374.
Morris, D.A. (1977). Transport of exogenous auxin in two-branched
dwarf pea seedlings (Pisum sativum L.). Planta 136: 91–96.
Morris, S.E., Turnbull, C.G., Murfet, I.C., and Beveridge, C.A.
(2001). Mutational analysis of branching in pea. Evidence that
Rms1 and Rms5 regulate the same novel signal. Plant Physiol.
126: 1205–1213.
Mou, Z., He, Y., Dai, Y., Liu, X., and Li, J. (2000). Deficiency in fatty
acid synthase leads to premature cell death and dramatic alterations
in plant morphology. Plant Cell 12: 405–418.
Napoli, C. (1996). Highly branched phenotype of the Petunia dad1-1
mutant is reversed by grafting. Plant Physiol. 111: 27–37.
Niwa, Y., Hirano, T., Yoshimoto, K., Shimizu, M., and Kobayashi, H.
(1999). Non-invasive quantitative detection and applications of non-
toxic, S65T-type green fluorescent protein in living plants. Plant J. 18:
455–463.
Nordstrom, A., Tarkowski, P., Tarkowska, D., Norbaek, R., Astot, C.,
Dolezal, K., and Sandberg, G. (2004). Auxin regulation of cytokinin
biosynthesis in Arabidopsis thaliana: A factor of potential importance
for auxin-cytokinin-regulated development. Proc. Natl. Acad. Sci.
USA 101: 8039–8044.
Okada, K., Ueda, J., Komaki, M.K., Bell, C.J., and Shimura, Y. (1991).
Requirement of the auxin polar transport system in early stages of
Arabidopsis floral bud formation. Plant Cell 3: 677–684.
Ongaro, V., and Leyser, O. (2008). Hormonal control of shoot branching.
J. Exp. Bot. 59: 67–74.
Pilate, G., Sossountzov, L., and Miginiac, E. (1989). Hormone levels
and apical dominance in the aquatic fern Marsilea drummondii A. Br.
Plant Physiol. 90: 907–912.
Prasad, T.K., Li, X., and Cline, M.G. (1993). Does auxin play a role in
the release of apical dominance by shoot inversion in Ipomoea nil.
Ann. Bot. (Lond.) 71: 223–229.
Ruzin, S.E. (1999). Plant Microtechnique and Microcopy. (New York:
Oxford University Press).
Sachs, T., and Thimann, K.V. (1964). Release of lateral buds from
apical dominance. Nature 201: 939–940.
Shelagh, M.H., and John, R.H. (1975). Correlative inhibition of lateral
bud growth in Phaseolus vulgaris L. timing of bud growth following
decapitation. Planta 123: 137–143.
Shimizu-Sato, S., and Mori, H. (2001). Control of outgrowth and
dormancy in axillary buds. Plant Physiol. 127: 1405–1413.
Sieberer, T., and Leyser, O. (2006). Plant science. Auxin transport, but
in which direction? Science 312: 858–860.
Simons, J.L., Napoli, C.A., Janssen, B.J., Plummer, K.M., and
Snowden, K.C. (2007). Analysis of the DECREASED APICAL DOM-
INANCE genes of petunia in the control of axillary branching. Plant
Physiol. 143: 697–706.
Snowden, K.C., Simkin, A.J., Janssen, B.J., Templeton, K.R., Loucas,
H.M., Simons, J.L., Karunairetnam, S., Gleave, A.P., Clark, D.G.,
and Klee, H.J. (2005). The Decreased apical dominance1/Petunia
hybrida CAROTENOID CLEAVAGE DIOXYGENASE8 gene affects
branch production and plays a role in leaf senescence, root growth,
and flower development. Plant Cell 17: 746–759.
Sorefan, K., Booker, J., Haurogne, K., Goussot, M., Bainbridge, K.,
Foo, E., Chatfield, S., Ward, S., Beveridge, C., Rameau, C., and
Leyser, O. (2003). MAX4 and RMS1 are orthologous dioxygenase-like
genes that regulate shoot branching in Arabidopsis and pea. Genes
Dev. 17: 1469–1474.
Stirnberg, P., Furner, I.J., and Ottoline Leyser, H.M. (2007). MAX2
participates in an SCF complex which acts locally at the node to
suppress shoot branching. Plant J. 50: 80–94.
Stirnberg, P., van De Sande, K., and Leyser, H.M. (2002). MAX1 and
1524 The Plant Cell
Dow
nloaded from https://academ
ic.oup.com/plcell/article/21/5/1512/6095307 by guest on 31 July 2021
MAX2 control shoot lateral branching in Arabidopsis. Development
129: 1131–1141.
Tanaka, M., Takei, K., Kojima, M., Sakakibara, H., and Mori, H.
(2006). Auxin controls local cytokinin biosynthesis in the nodal stem in
apical dominance. Plant J. 45: 1028–1036.
Tantikanjana, T., Yong, J.W., Letham, D.S., Griffith, M., Hussain, M.,
Ljung, K., Sandberg, G., and Sundaresan, V. (2001). Control of
axillary bud initiation and shoot architecture in Arabidopsis through
the SUPERSHOOT gene. Genes Dev. 15: 1577–1588.
Thimann, K.V., and Skoog, F. (1934). On the inhibition of bud devel-
opment and other functions of growth substance in Vicia faba. Proc.
R. Soc. Lond. B. Biol. Sci. 114: 317–339.
Turnbull, C.G., Booker, J.P., and Leyser, H.M. (2002). Micrografting
techniques for testing long-distance signalling in Arabidopsis. Plant J.
32: 255–262.
Umehara, M., Hanada, A., Yoshida, S., Akiyama, K., Arite, T.,
Takeda-Kamiya, N., Magome, H., Kamiya, Y., Shirasu, K.,
Yoneyama, K., Kyozuka, J., and Yamaguchi, S. (2008). Inhibition
of shoot branching by new terpenoid plant hormones. Nature 455:
195–200.
Van Dijck, R., De Proft, M., and De Greef, J. (1988). Role of ethylene
and cytokinins in the initiation of lateral shoot growth in bromeliads.
Plant Physiol. 86: 836–840.
Wang, Y., and Li, J. (2005). The plant architecture of rice (Oryza sativa).
Plant Mol. Biol. 59: 75–84.
Wang, Y., and Li, J. (2008). Molecular basis of plant architecture. Annu.
Rev. Plant Biol. 59: 253–279.
Yoneyama, K., Xie, X., Sekimoto, H., Takeuchi, Y., Ogasawara, S.,
Akiyama, K., Hayashi, H., and Yoneyama, K. (2008). Strigolactones,
host recognition signals for root parasitic plants and arbuscular
mycorrhizal fungi, from Fabaceae plants. New Phytol. 179: 484–494.
Zou, J., Zhang, S., Zhang, W., Li, G., Chen, Z., Zhai, W., Zhao, X.,
Pan, X., Xie, Q., and Zhu, L. (2006). The rice HIGH-TILLERING
DWARF1 encoding an ortholog of Arabidopsis MAX3 is required
for negative regulation of the outgrowth of axillary buds. Plant J. 48:
687–698.
D27, a New Member of the MAX Pathway 1525
Dow
nloaded from https://academ
ic.oup.com/plcell/article/21/5/1512/6095307 by guest on 31 July 2021