5
JOURNAL OF BACTERIOLOGY, Apr. 1990, p. 2194-2198 Vol. 172, No. 4 0021-9193/90/042194-05$02.00/0 Copyright © 1990, American Society for Microbiology Cloning and Nucleotide Sequence of bisC, the Structural Gene for Biotin Sulfoxide Reductase in Escherichia coli DOROTHY E. PIERSONt AND ALLAN CAMPBELL* Department of Biological Sciences, Stanford University, Stanford, California 94305 Received 11 October 1989/Accepted 8 January 1990 Clones of the Escherichia coli bisC locus have been isolated by complementing a bisC mutant for growth with d-biotin d-sulfoxide as a biotin source. The complementation properties of deletions and TnS insertions located the bisC gene to a 3.7-kilobase-pair (kbp) segment, 3.3 kbp of which has been sequenced. A single open reading frame of 2,178 bp, capable of encoding a polypeptide of molecular weight 80,905, was found. In vitro transcription of plasmids carrying the wild-type sequence and deletion and insertion mutants showed that BisC complementation correlated perfectly with production of a polypeptide whose measured molecular weight (79,000) does not differ significantly from 80,905. The Escherichia coli protein biotin d-sulfoxide (BDS) reductase reduces a spontaneous oxidation product of bio- tin, BDS, back to biotin (8). Mutants that are unable to synthesize biotin can use BDS as their sole source of biotin (25). The BDS reductase protein, which is encoded by the bisC gene, requires the presence of both a small thioredox- inlike protein and a molybdenum cofactor for activity (8, 9). The thioredoxinlike protein has not been well characterized. On the other hand, the genes required for molybdenum cofactor production have been studied intensively. The cofactor is a pterin ring structure which is extremely oxygen labile (6, 19). The production of the pterin cofactor, the addition of molybdenum to this molecule, and the insertion of the molybdopterin into apomolybdoenzymes require the products of eight genes in E. coli: chlA, B, D, E, F, G, M, and N (10, 20, 36, 37). Cells with a mutation in any one of these genes have a pleiotropic phenotype. In addition to being unable to reduce BDS, they cannot utilize nitrate, trimethylamine-N-oxide, or dimethyl sulfoxide anaerobi- cally as a terminal electron acceptor (2, 14, 38), they cannot use formate as an electron donor (5, 16), and, as their name implies, they are resistant to chlorate (14, 28, 29). Chlorate reduction appears to be catalyzed by several molybdoen- zymes of E. coli, and only when all are inactivated do cells become resistant to chlorate (37). The function of BDS reductase in E. coli is unknown. It may serve as a scavenger, allowing the cell to utilize BDS as a biotin source. Another possible role for this protein is to protect the cell from oxidation damage, as do superoxide dismutase and methionine sulfoxide reductase (3, 11, 13). BDS reductase may restore activity to enzymes that have been inactivated by the spontaneous oxidation of the biotin cofactor covalently bound to them. A recombinant phage containing the bisC gene was iso- lated by M. Martin in our laboratory by selecting from a clone bank clones that allowed strains with a particular bisC point mutation to grow on minimal media containing BDS as the sole biotin source. A clone bank of the E. coli chromo- some from the bisC+ bio deletion strain KS302 (Table 1) was prepared by inserting a Sau3A partial digest of bacterial chromosomal DNA prepared by the method of Redfield and * Corresponding author. t Present address: Department of Microbiology and Immunology, Stanford University, Stanford, CA 94305-5402. Campbell (30) into a BamHI digest of the A cloning vector X1059 (21). bisC+ clones were isolated from the bank by lytic complementation of the bisC32 point mutation found in strain S1187 (Table 1) as follows. A 0.1-ml volume of a stationary culture of S1187 was mixed with the E. coli clone bank and plated in minimal A (26) soft agar on glucose minimal A plates containing 4 x 10-3 ,ug of BDS per ml and 0.007% triphenyltetrazolium chloride as an indicator dye. Feeding plaques were identified by a red halo that was formed by the growth of cells around the plaque due to release of biotin by cells lysed by bacteriophage containing bisC32-complementing sequences. Feeding plaques were picked and repurified twice. These phage were tested further for lytic complementation of another bisC allele, in strain S1130 (Table 1), which they complemented, and for the complementation of two chl gene mutations, chlG21 and chlE4J, which they failed to complement. A single positive clone containing an insert of 19.5 kilobase pairs (kbp) was used for all further studies. A partial restriction map of this clone, XbisC, is shown in Fig. 1A. A 5.8-kbp internal EcoRI-PstI fragment of XbisC was subcloned into plasmid pUC9 (39). This subclone, pBISC352, complemented all bisC alleles tested, including spontaneous temperature-sen- sitive mutations, nitrosoguanidine-induced mutations, TnS insertions, and Mu insertions. To define the position of the bisC gene on pBISC352 and to determine its orientation, the clone was subjected to deletion and insertion analysis (Fig. 1B and C) Deletions constructed by subcloning different restriction fragments of pBISC352 into pUC9 were tested for complementation of the bisC32 mutation. This deletion analysis places the gene on a 3.2-kbp HincII-HindIII fragment (Fig. 1A). The position of the bisC gene was further restricted by insertional mutagen- esis with the two transposable elements Tn5 and Mu d11681 (7, 12). Cells harboring pBISC352 were infected with the TnS-containing phage XNK467 (Table 1) at a multiplicity of 5 and incubated at 30°C for 20 min to allow TnS to transpose from the phage to the plasmid and the chromosome. Plasmid DNA isolated from these cells by the boiling lysis method of Holmes and Quigley (18) was used to transform strain S1187 to ampicillin and kanamycin resistance by the calcium chloride transformation method (24), thus selecting for plas- mids into which TnS had transposed. These transformants were then tested for growth on BDS. Cells that were lysogenic for Mu dI1681 phage (POI1681 [Table 1]) were 2194

Cloning and nucleotide sequence of bisC, the structural gene for

  • Upload
    lydung

  • View
    216

  • Download
    3

Embed Size (px)

Citation preview

Page 1: Cloning and nucleotide sequence of bisC, the structural gene for

JOURNAL OF BACTERIOLOGY, Apr. 1990, p. 2194-2198 Vol. 172, No. 40021-9193/90/042194-05$02.00/0Copyright © 1990, American Society for Microbiology

Cloning and Nucleotide Sequence of bisC, the Structural Gene forBiotin Sulfoxide Reductase in Escherichia coli

DOROTHY E. PIERSONt AND ALLAN CAMPBELL*

Department of Biological Sciences, Stanford University, Stanford, California 94305

Received 11 October 1989/Accepted 8 January 1990

Clones of the Escherichia coli bisC locus have been isolated by complementing a bisC mutant for growth withd-biotin d-sulfoxide as a biotin source. The complementation properties of deletions and TnS insertions locatedthe bisC gene to a 3.7-kilobase-pair (kbp) segment, 3.3 kbp of which has been sequenced. A single open readingframe of 2,178 bp, capable of encoding a polypeptide of molecular weight 80,905, was found. In vitrotranscription of plasmids carrying the wild-type sequence and deletion and insertion mutants showed that BisCcomplementation correlated perfectly with production of a polypeptide whose measured molecular weight(79,000) does not differ significantly from 80,905.

The Escherichia coli protein biotin d-sulfoxide (BDS)reductase reduces a spontaneous oxidation product of bio-tin, BDS, back to biotin (8). Mutants that are unable tosynthesize biotin can use BDS as their sole source of biotin(25). The BDS reductase protein, which is encoded by thebisC gene, requires the presence of both a small thioredox-inlike protein and a molybdenum cofactor for activity (8, 9).The thioredoxinlike protein has not been well characterized.On the other hand, the genes required for molybdenumcofactor production have been studied intensively. Thecofactor is a pterin ring structure which is extremely oxygenlabile (6, 19). The production of the pterin cofactor, theaddition of molybdenum to this molecule, and the insertionof the molybdopterin into apomolybdoenzymes require theproducts of eight genes in E. coli: chlA, B, D, E, F, G, M,and N (10, 20, 36, 37). Cells with a mutation in any one ofthese genes have a pleiotropic phenotype. In addition tobeing unable to reduce BDS, they cannot utilize nitrate,trimethylamine-N-oxide, or dimethyl sulfoxide anaerobi-cally as a terminal electron acceptor (2, 14, 38), they cannotuse formate as an electron donor (5, 16), and, as their nameimplies, they are resistant to chlorate (14, 28, 29). Chloratereduction appears to be catalyzed by several molybdoen-zymes of E. coli, and only when all are inactivated do cellsbecome resistant to chlorate (37).The function of BDS reductase in E. coli is unknown. It

may serve as a scavenger, allowing the cell to utilize BDS asa biotin source. Another possible role for this protein is toprotect the cell from oxidation damage, as do superoxidedismutase and methionine sulfoxide reductase (3, 11, 13).BDS reductase may restore activity to enzymes that havebeen inactivated by the spontaneous oxidation of the biotincofactor covalently bound to them.A recombinant phage containing the bisC gene was iso-

lated by M. Martin in our laboratory by selecting from aclone bank clones that allowed strains with a particular bisCpoint mutation to grow on minimal media containing BDS asthe sole biotin source. A clone bank of the E. coli chromo-some from the bisC+ bio deletion strain KS302 (Table 1) wasprepared by inserting a Sau3A partial digest of bacterialchromosomal DNA prepared by the method of Redfield and

* Corresponding author.t Present address: Department of Microbiology and Immunology,

Stanford University, Stanford, CA 94305-5402.

Campbell (30) into a BamHI digest of the A cloning vectorX1059 (21). bisC+ clones were isolated from the bank by lyticcomplementation of the bisC32 point mutation found instrain S1187 (Table 1) as follows. A 0.1-ml volume of astationary culture of S1187 was mixed with the E. coli clonebank and plated in minimal A (26) soft agar on glucoseminimal A plates containing 4 x 10-3 ,ug of BDS per ml and0.007% triphenyltetrazolium chloride as an indicator dye.Feeding plaques were identified by a red halo that wasformed by the growth of cells around the plaque due torelease of biotin by cells lysed by bacteriophage containingbisC32-complementing sequences. Feeding plaques werepicked and repurified twice. These phage were tested furtherfor lytic complementation of another bisC allele, in strainS1130 (Table 1), which they complemented, and for thecomplementation of two chl gene mutations, chlG21 andchlE4J, which they failed to complement. A single positiveclone containing an insert of 19.5 kilobase pairs (kbp) wasused for all further studies. A partial restriction map of thisclone, XbisC, is shown in Fig. 1A. A 5.8-kbp internalEcoRI-PstI fragment of XbisC was subcloned into plasmidpUC9 (39). This subclone, pBISC352, complemented allbisC alleles tested, including spontaneous temperature-sen-sitive mutations, nitrosoguanidine-induced mutations, TnSinsertions, and Mu insertions.To define the position of the bisC gene on pBISC352 and

to determine its orientation, the clone was subjected todeletion and insertion analysis (Fig. 1B and C) Deletionsconstructed by subcloning different restriction fragments ofpBISC352 into pUC9 were tested for complementation of thebisC32 mutation. This deletion analysis places the gene on a3.2-kbp HincII-HindIII fragment (Fig. 1A). The position ofthe bisC gene was further restricted by insertional mutagen-esis with the two transposable elements Tn5 and Mu d11681(7, 12). Cells harboring pBISC352 were infected with theTnS-containing phage XNK467 (Table 1) at a multiplicity of 5and incubated at 30°C for 20 min to allow TnS to transposefrom the phage to the plasmid and the chromosome. PlasmidDNA isolated from these cells by the boiling lysis method ofHolmes and Quigley (18) was used to transform strain S1187to ampicillin and kanamycin resistance by the calciumchloride transformation method (24), thus selecting for plas-mids into which TnS had transposed. These transformantswere then tested for growth on BDS. Cells that werelysogenic for Mu dI1681 phage (POI1681 [Table 1]) were

2194

Page 2: Cloning and nucleotide sequence of bisC, the structural gene for

NOTES 2195

TABLE 1. Bacterial strains, plasmids, and phages used

Strain Genotype Origin or reference

S1130 F- araDJ39 AlacU169 thi 4rpsL 't(bioA-lacZ)301 bisC

S1134 F- araD139 AlacU169 thi 4rpsL 'D(bioA-lacZ)301chlE41

S1187 F+ bioA24 bisC32 (A imm434) 8S1196 F+ bioA24 chlG21 Curing of S1177 (8)S1312 F- araD139 AlacUl69 thi Transduction to Tcr

rpsL bioA24 (X imm434) of bisC::Mu ctszbh428::TnJO bisC8::Mu mutant of A. delcts Campillo-Campbell

S1316 F- araDJ39 A1acUJ69 thi Same as for S1312rpsL bioA24 zbh428::TnlObisC9::Mu cts

KS302 HfrH A(gal-bio) 33POI1681 araD139 araB::Mu cts Alac 12

rpsL (Mu d11681 [Km]ABamHIcts)

pUC9 lac+ Apr 39pDEPO Apr 27M13mpl8, 40mp19

X1059 21ANK467 c1857 b221 rex::TnS Oam N. Kleckner

Pam

A.hbisC

pBISC352 I 1 I |

P H E P PHEI II I_II

P IU M CS V TR TUB H I VRE

1I kbp

B.

+

I oI I -

I - -I I _

C.

I I *1 I jI Tn5II

'll III III I III Mini-Mu

transformed (24) with pBISC352, and a Mu-transducinglysate was prepared from these cells by inducing the Muprophage in a logarithmically growing culture at 43°C for 2.5h. A bisC::Mu strain, S1312 (Table 1), was transduced (26) toresistance to ampicillin and kanamycin with this lysate.These transductants, which must harbor pBISC352 intowhich Mu dI1681 has transposed, were screened for growthon BDS. The positions of these insertions (Fig. 1C) suggestthat the bisC gene occupies a maximum of 2.8 kbp of theoriginal clone. There is a small region of overlap of comple-menting and noncomplementing insertions into the bisCclone. Since both of the noncomplementing Mu dI1681insertions are in the same orientation relative to the bisCgene but the noncomplementing insertion is in the oppositeorientation, this overlap is probably due to polarity effects ofthe insertion element in one orientation but not the other.This result suggests that these insertions are between thebisC promoter and the start of the bisC coding region.The polypeptides produced by the original bisC gene

clone, pBISC352, were identified both in vivo by maxicellanalysis (31) of cells containing the clone (data not shown)and in vitro by transcription and translation (41) of plasmidDNA. These polypeptides were identified by sodium dode-cyl sulfate-polyacrylamide gel electrophoresis (23) of [35S]methionine (Amersham)-labeled proteins prepared in an S30extract (Amersham) used according to the instructions of themanufacturer with 3 ,ug of cesium chloride gradient-purified(24) plasmid DNA. Three polypeptides with molecularweights of 79,000, 34,000, and 22,000 (79K, 34K, and 22Kpolypeptides) were produced by this clone (Fig. 2). The 79Kpolypeptide was the sole polypeptide required for the BisC+phenotype (Fig. 2). In experiments in which the products ofthe three TnS insertion mutants and the six deletion mutantswhich fail to complement bisC32 were produced by in vitrotranscription or translation of purified DNA, the 34K and22K polypeptides were produced but the 79K polypeptidewas not (Fig. 2, lanes 3, 5, 8, 9, 10, 11, and 14). More

FIG. 1. Location of the bisC gene on the bisC clone. (A) Restric-tion maps of the 19.5-kbp bacterial DNA insert in XbisC and of the5.8-kbp subclone, pBISC352. The restriction enzymes used werePstI (P), HinclI (I), PvuI (U), MluI (M), ClaI (C), StuI (S), PvuII(V), BstEII (T), EcoRV (R), BglII (B), HindlIl (H), and EcoRI (E).The 1-kbp scale is for the pBISC352 map and the maps in panels Band C. (B) The fragments of bisC DNA present in several subclonesof pBISC352 are aligned with the map of pBISC352 in panel A. Theabilities of these subclones to complement the bisC32 allele areshown on the right. Some clones (+) complement the mutant forgrowth on BDS minimal plates, and other (-) do not. (C) Positionsof Tn5 insertion are indicated above the line, and positions of MudI1681 insertions are indicated below the line; the map is alignedwith the map of pBISC352 in panel A. Tn5 insertion clones weretested for the ability to complement the bisC32 mutation. Mu d11681insertion clones were tested for the ability to complement thebisC8: :Mu mutation. Insertion clones that complement are indicatedby a short line; those that do not are indicated by a long line.

important, the 34K polypeptide was not produced by one ofthe TnS insertion mutants that can complement the bisC32mutation (lane 15), and the 22K polypeptide was not pro-duced by a different complementing TnS insertion mutant(lane 4). The 79K polypeptide was produced, however, inthese two insertion mutants and in two others that cancomplement the bisC32 mutation (lanes 12 and 13).The fact that our cloned segment complements bisC

mutations suggests (but does not prove) that the generesponsible for the complementation is really the bisC locus.To prove that it is, one of the bisC temperature-sensitivestructural gene mutations isolated by del Campillo-Campbelland Campbell (8), bisCJJ7(Ts) was cloned by using its abilityto hybridize to the wild-type clone. The region containingthe mutation was mapped to the interval between bp 1180and 1780 on the wild-type bisC sequence map (see below andFig. 3), which is within the open reading frame proposedhere to be the BDS reductase coding region. The DNAsequence of this mutant from bp 1290 to 2050 was deter-

li I I I 11 I I I 11

ii I

i I

VOL. 172, 1990

Page 3: Cloning and nucleotide sequence of bisC, the structural gene for

2196 NOTES

...

p

FIG. 2. Analysis of polypeptide products of deletion and TnS insertion mutations in the bisC clone expressed in a coupled in vitrotranscription-translation system. Polypeptides labeled with [35S]methionine were produced in an S30 extract of E. coli (41). These were thensubjected to sodium dodecyl sulfate-polyacrylamide gel electrophoresis. Autoradiograms of two gels are shown. The bisC fragments andinsertion mutants tested in this system are indicated below the autoradiograms. Those marked with a plus sign complement the bisC32mutation and produce the 79K polypeptide. Those marked with a minus sign do not complement the bisC32 mutation and do not produce the79K polypeptide, although several do produce polypeptides of altered sizes. Lanes: -, no DNA; 1, pDEPO (27); 2, 5-kbp PstI-HindIII bisCfragment cloned into pDEPO; 3, 4.6-kbp PstI-BgllI bisC fragment cloned into pDEPO; 4 and 5, TnS insertions in plasmid used in lane 2; 6,pUC9 (39); 7, 5-kbp PstI-HindIII bisC fragment cloned into pUC9; 8, EcoRV-PvuII internal deletion of plasmnid used in lane 7; 9, StuI-EcoRVinternal deletion of plasmid used in lane 7; 10, StuI-PvuII internal deletion of plasmid used in lane 7; 11, 3.9-kbp PstI-EcoRV fragment intopUC9; 12 through 15, TnS insertions in plasmid used in lane 7.

mined by the dideoxy sequencing method, and the solechange from the wild-type sequence was shown to be aG-to-T transversion at bp 1443 (data not shown). This basechange results in a change from a methionine to an isoleucinecodon in the BDS reductase protein. Additional evidencecomes from Southern analysis of a Mu insertion (in S1316[Table 1]) that has been mapped to the bisC locus by geneticmeans. By using probes representing different regions of thecloned gene, we have mapped the Mu insertion to the0.3-kbp BstEII-EcoRV fragment in the center of the gene(Fig. 1). Sequences on either side of this region are stillpresent in this strain (data not shown). Thus, two knownbisC mutations map within the region proposed to be thebisC coding region.The sequence of the 3.3 kbp of the 3.7-kbp HincII-EcoRI

fragment containing the bisC gene was determined by thedideoxy chain termination method (32). M13mpl8 andM13mpl9 clones of this fragment were subjected to exonu-clease III deletions from either end (17). This produced acomplete sequence, including every base of 3.3 kbp of the3.7-kbp fragment, a minimum of two times in each direction.The sequence of this 3.3 kbp is shown in Fig. 3. An openreading frame thought to correspond to the bisC codingregion and capable of encoding a polypeptide with a pre-dicted molecular weight of 80,905 is also shown in Fig. 3.The three noncomplementing TnS insertions and the sixdeletion mutants which do not produce the 79K polypeptide

in the in vitro transcription-translation system all map to thisopen reading frame. The sequence places the 5'-to-3' orien-tation of the bisC gene from left to right on the map of Fig.1A. An examination of the hydropathicity of the predictedBisC open reading frame by the method of Kyte and Doo-little (22) suggests that the product is a soluble protein,which is consistent with the location of the enzyme inpartially purified preparations (9; unpublished observations).The codon usage in the predicted open reading frame (datanot shown) is typical of weakly expressed E. coli proteins(15). The 700-bp sequence upstream of the bisC codingregion includes no sequences with appreciable homology tothe consensus ribosome-binding site (34) and promoter of E.coli (35). Because of this, we have no reason to assume thatthe major initiation site for translation is at nucleotide 577 (asshown) rather than at the downstream ATG at nucleotide643. The bisC gene appears to be expressed at a low rate invivo. The bisC product, the 79K polypeptide, is expressed invitro at rates much lower than those of the vector-borne geneproduct, the P-lactamase polypeptide, and indeed lower thanthose of the other two polypeptides produced by the clonedDNA (Fig. 2). This low level of expression may explain thedifficulty in identifying sequences that match consensussequences important for gene expression in E. coli.The sequences of two other molybdoenzymes from E. coli

show some similarities to that of bisC (1).

J. BACTERIOL.

Page 4: Cloning and nucleotide sequence of bisC, the structural gene for

VOL. 172, 1990 NOTES 2197

i5 30 45 00 75 90ATM Coc CO TO =O i CC TM CMCA TO CC CC fl TO CC CLCTA CC TI CT cAc AT CA OTA ATML MC WCC GCCC

103 120 135 150 105 Ig0GM Cho AMC TOO COM TGC TGC TGC GCC MAT CMG CCC GCC TNT ACC GMC ATC TNT CT? CGA MA MGA GM CCC ACC MAT ACC CCC CCC CAC

195 210 225 240 255 270CM MA" GMC CMO MC TGC CCC CGT MC MA TT AMC TIC T?C GCC TIC GCC COT OTA MOGOTT ACT TOT CCA GCC MAG TMC CCC CM ACC

26 300 315 30345 360CCC LOT CAC TMC GCC CCC LAT AMG ATA MAC ACC TNT CIT? CAT TOT TMA TCC TTA ATA ACC TTT TTA TIC TTT GCC ACC; COOT TCC CT GCCC

375 390 405. 420 435 450CCL CAT TMT CCC Gee TG AMA TCA MAG T?A TIC CTG CCL ATA CIC CC AMT TIC TMA CTA ATA TNT MAC TCC TCA ATA CAT CTA ACC TTT

465 460 495 510 525 540CMG CM TOT TCC CT? TOO CCL AOT CAT CCT CMC CAT AT? CCC TIC TCA CTC CCC CCA TIC CCCG CCC CAT CGM CC! TCA MAC CCA CCCG CGA

555 570 565 000 615 630AMCCCCOT? TMGCM CCT CCC CCC T?A CCC MAC CCA ATO CMA AC TCC TIC CMG MCC CCC C CCC CAC CMG CTI CAC MGC MAT ACO COG

NET Glu Asn Sar Lou Clni Sor Ala Vol kr; Asp Clni Val His Sor Len Thrl Ar;645 060 075 0690 705 720

GTA CCM TM CCA ATO OT CCA AM CCC TTT CTT CCC TCA CCC GCA MAC CCC CM CCC ATT COT CCC CMG OAT CMA TNT CT? CC GTM MCTVal LAr pta pro Not val LAV LIe Cly Pto Lou Ala Sor Pro Clu LOU Pro Clni Cly I1a Lrgayly Clni Lsp Clu Pbs Vol LAr Vol Sar

735 750 765 760 79S 610TOO CAT CM GCC CTC CAT CT? AT? CMC CMA CAL CAT AMA CCC AT? CCT GAM GCT TAT GOCT CCC GCA TCC ATI TNT CCI GOCT TCC TMC GCCTip Asp Clu Ala Lou Lsp Lou I1e Nis Clni ClniHis Lys Ary I1e Ar; 0lu Ala Tyr 01y Pro Ala Oar I1. Pb. Ala Cly Sor Tyr 017

ClaN625 640 65 70 65900

TOO CC! TC AMC CCC CTC CIC CAT AMG GCCC TCC ACh TTA T?A CMA CCC TAT ATO GCCC CI CCL CCC GOCT TAT ACC COO CAT CTG GCG CATTMp An Saw Lon 01y Vol Lou Nis Lys Ala SOar Tbr Lou Lou Clni Lip Tyr Not Ala Lum Ala 01y 017 Tyr Tb? 01y His Lou 017 Lop

StuN615 630 645 960 675 960

TAT TCC MCCCCCWG CCL CMG CCC ATC ATC CCG TAT OTC CTC COT GOT MT GCM CT? TAT CM CMO CMG ACC MGT Too CCC CIC aTn CICTyr Sor Tb? 01y Ala Ala Clni Ala I1e Not Pro Tyr Vol Vol 017 01y Oar Glu Vol Tyr Clii Clni Cln Tb? Sar Tip Pro Lou Vol Lou

1005 1020 1035 1050 1005 1060CMa CAT MCe CAT CTC OTO OTO CIO Too MaT GCCI MC CCL CIC MAT ACC 010 AMA AT? CCC TOO M&T CCA TCC CAT CMa CMa CCC CT? TOTClu 31s SOr Lop Vol Vol Vol Lou Tip Sar Ala LOU Pro Lou Lon Tb? Lou Lys I1e Ala Tip LOii Ala Sor Asp Glu Clni 01y Lou Oar

1095 1110 1125 1140 1155 1170TMC TTT TCI CCL CIC COT CAC MGC COO AM AM CTC ATC TOC AT? CAT CCL ATO CCL TOO CMk ACC CTC CAT TIC TNT GGC CAT AMA ATOTyr Pta Oar Ala Lou LAr Lop Oar 01y Lys Lys Lou I1e Cy0 I1e Lop Pro, not Ar; Oar Glu TSr Vol Asp Ph. Pbs 01y Asp Lys not

1165 1200 1215 1230 1245 1200CMG TOO GTM CCL CCC CAC kTO CCC ACC CAT CT? GCC CIG ATO CIC GCC ATC CCC CAT ACC CTC GTO CMA MAT COT TOO CAC GCM CM QCCCGlu Tip Vol Ala Pro His Not Gly Tbr ksp Vol Ala Lum Hat Lou Cly I1e Ala His TSr Lou Vol Olu LOn 017 Tip His LOp GlU Ala

1275 1290 1305 1320 1335 1350TNT C10 0CC CC! TGC MCC MAC COT TAT GCC GTC TIC CCC TCI TAT TIC CTG CCC CMG ACT GAC CCL ATA GCC MLA oCC GCC GMA TOO GCCAPta Lou Ala LAvg Cyo Tb? TSr 017 Tyr Ala Vol Pb. Ala Oar Tyr Lou Lou 01y Glu oar Lop 017 I1. Ala Lyo Tb? Ala Glu Trp Ala

1365 1360 1395 1410 1425 1440OCA CMG AT? TOT GOT CT? GCC GCCL GCCC AMA LTC CCC CMA01CTO CCIG AT? TIC CAC CMA ALT ACC ACC ATO CIC ATO GCCL CC TOO CCLAla Clu I1e Cyo 017 Vol 01y Ala Ala Lyo I1e Ar; Glu Lou Ala Ala I1e Pta Nis Clii LOU Thr TSr Not Lou Not Ala 017 Tip 017

1455 1470 1465 1500 1515 1530ATO CMG CCC CMA CMG TNT COT CMG CM AMA CAC TOC ATO ATC CTC ACO CTO GCCL GCCL ATO TIC GOO CMA ATC CCC ACA CCC CCC CCC COTnot ClIs LAy Clni Clin Pteal0 Glu Clii Lys His Tip Nat I1e Vol Thr Lou Ala Ala Hat Lou 01y Clii Ile 017 TSr Pro 017 017 Gly

1545 1560 1575 1560 1005 1020TNT CC! C TOT TMC CAT TNT CCC M&T CC! OCT MC CCC MA CC COGCT TOT GCC OTG CTC TOT TCC ATO CMG CCC MC TIC CCO OCT GCCPta 017 Lou Oar Tyr Nis Pta Ala LOU Cly Cly Aon Pro Thr An An; Oar Ala Vol Lou SOar Oar Hat Clni 01y Oar Lou Pro 017 01y

astOZI1035 1050 1005 1660 1095 1710

TOO OAT a09 aTO OAT AMA LTC CC! CT? CCC CCC AT? CT? CMA GCC CIC CM MAC CCT OCT GGC GCCL TAT CMA CMC MAC CC! ATG MAC CCLCyO Lop Ala Vol Lop Lys I1e Pro Vol Ala LAr 21e Vol Glu Ala Lou Olu AOin Pro 017 017 Ala Tyr ClnisA± nLO l01 Not LOn Lrg

1725 1740 1755 1770 1765 1600CAT T!C CCC CAT AT? CC! TNT ATC TCC TOC GCCC 0GGCCGO CC M&C TNT MCT CAT CAT CMG CAT ACC MAT CCC CIO ATC CC! CCC TOO CM3±6 nta pro Lop I1a Ar; Pta Ile Tip Tip Ala 017 Cly Ala ken Pha Tb? His Nis Clii LOp Tbr LOU Arg Lou I1. Arg Ala Tip Glni

1615 1030 1645 1600 1675 1690AMA CCC &CM 1 TOOTO LTC TCT CMA TOC TIC TOO AC GCCC CCC CCL AMA CMCCCC CAT ATC CT? CTG CCI GCC ACI ACC TCI TNT CMaLYa Pro Glu Lou Vol Vol 210 Oar Glu Cys Pha Tip Tb? Ala Ala Ala Lys Hio Ala LOp 210 Vol Lou Pro Ala Thr Tbr SOar Pb. Clu

Eco3v1605 1520 1935 1950 1905 1660

CC! MT CA! CTC MCC ATO MCC OCT CAT TAC MGT MAT CMG CAT CTC GTO CCC ATO AMG CM OTM OT CCC CCL CCC TAT CM GCC COT M&TACV LAnAsLp Lou Tb? Not Tb? 017 LOp Tyr Sar AOn Clii 3±s Lou Vol Pro Not Lys Clni Vol Vol Pro Pro Ar; Tyr Glu Ala Ar; LOin

1995 2010 2025 2040 2055 2070CAT mT CAT CT TNT CCC CMG TTA MGT CMA CGC TOO CM AMO CCC OCT TAT GCCL COT TNT ACO CM CCL AMA MGT GAMCTO CMA TOO CTOLop Pta Lop Vol Pta Ala Glu Lou SOar Glu Avg Tip Glu Lys 017 017 Tyr Ala LAr Pb. TSr Olu 017 Lye Oar Clu Lou Clii Tip Lou

2065 2100 2115 2130 2145 21600CMA MC TNT TAT M&C CT? CCC CCA CMG CCC GGCCCCL C CMa CMa CT? CM TIC CCC CC& TNT GCCI CM TIC TOO CMA CCC MAC CMO TTLGlu Thr Ito Tyr Ami Vol Ala An; Gln Ar; 017 Ala Bar Clni Cln Vol Glu Lou Pro Pro Ph. Ala Glu Pb. Tip Clni Ala Lsn Clni Lou

2175 2190 2205 2220 2235 2250AT? CMO ATO CCC CM MAC CCC GAC AC GCM COG TNT LT? CGC TTC GCOT CCL TNT TIC CCC CCL TCC CCI CCC CAT CCC TIA AM ACO CMGX1. Glu Not Pro Glu AOin Pro LOp Oar Glu Ar; Phe 21. Ar; Pb. Ala Ala Ph. Lou Pro Ar SOar Alb Gly ksp Pro Lou Lys Thr Clni

2205 2260 2295 2310 2325 2340CCC AMG AT? CMA ATC TIC TCA CMG COT AT? GCC CLT TAC COT TAC CCC CAT TOC CCT CCG CAT CCA ATG TOO CTC GAC CCC CAC CM TOOLArg Lys I1. Olu 21e Pta Oar Clni Arg 21e Ala Asp Tyr 017 Tyr Pro Asp Cys Pro 017 3±a Pro Not Tip Lou Glu Pro Lsp Glu Tip

sot!!!2355 2370 2385 2400 2415 2430

CMG CCC MT CCC CMk CCL CMA CMG TIC CM CTA CNT TCI CCC CAT CCG CCC CAC CCC CTC, CAC AGC CLO CTC MAT TAC ACT TOT CTC CGCCClni 017 Los Ala Clu Pro Glu Clii Lou Glii Vol Loeu Oar Ala His Pro Ala H±s Arq Lou His Sar Glii Lou Lsn Tyr Oar Oar Lou Ar;

Pv'jI!2445 2400 2475 2490 2505 2520

GM TTO TM CCOM TG GCCL MT COT CMG CCT GTC ACC ATI CAT CCTIAGAOCT CCC CMC CMG CGC GGC ATA CMA CAT GGC CAT LOT CT? CCC.Glu Loeu Tyr ALla Vol Ala LOU Ar; Clu Pro Vol Thr I1e His Pro Asp LOp Ala Clni Clu Arg 017 Ile Clni Lop Gly Lop Thr Vol Arq

2535 2550 2505 2560 2595 2010TIC TOO MC GCh CCC GGC CMA AT? CT? CCC CCL GCCC CTC AT? MOC CMG CCL AT? AM COT CCC OTO AT? TGC AT? CAC CM CGG GCCL TOOLou Tip LOss Ala Ar; Gly Oln 21. Lou Ala 01y Ala Vol I1e Oar Glu 017 I1e Lys Pro 017 Vol Ile Cys I1e His Clu 01y Ala Tip

2025 2040 2055 2070 2005 2700CCC CAT 010 CAT TTA ACC GCT CAC COT AT? TOT AMA MC OC GCCL GTO MC MTO CTG ACC AMA GAT CTC CCC AGC TCC CGG CTO CCL ATOPro Lop Lou LOp Lou Tb? Ala LOp 01y 21. Cys Lys LOU 01y Ala Vol LOU Vol Lou Thr Lye Asp Lou Pro Sar Oar Ar; Lou 01y Hot

Sql!!2715 2730 2745 2700 2775 2790

GCT OTO COG OTA ATA COG CCC TOO CAT CCC TOO AAM MT ACA ACO OTC CCC MAC TOA CAC TTA CAC COT TIC MAC CAC CGC CCL GCOT CATAla Val Lrg Vol I1e Lrp Am; Tip His oly Tip Lys Anni Thu Thr Vol kip LOU

2605 2520 2635 2550 2605 2660MhT CCL TOT CCC TMG TIC OCT TIC ATC CTOe CCL TOC GCCL ATC CLC MT aTO AMA ACC CTO TOC OTG GTA AMA AT? TAT CGC COG TIC AT?

2695 2910 2925 2940 2955 2970TN TIC ATA AMC CTC CMG CAT CMG GTO COO ATO G CCOTG CTC CAC ATA CTC CAT CAG CGC CTT ACC MAT ACC GCG CCT GAC GGC CTT CGG

2965 3000 3015 3030 3045 30600TOO "C AM CAT CGC TOO CMG AMA TCC GCC TIC CAT MAT GCOT GAC AMA ACC GAO MOG CT? ACC GTC TIC TTC CCL GAC CCL CTT TTG CGC

Hindlll3075 3090 3105 3120 3135 3150

GT? CCC AMG ATA CCC ATC CCC ACC AMC CCL LTC CMG TCA CGC CMG TM TIC GCOT TTT ATA MCr CCL TOO CCC CAG CT? CIA CT? TCC MOC3105 3100 3195 3210 3225 3240

CMC MT TOG MOG ATC 0CC 000 MGT TOT CM COT TOO COT TCC CCL LTC ATO OTT TAT TIC CCC CAT MCC MC MCC AGC CMA CCL CAT CAT3255 3270 3205 3300 3315 3330

CAT TCA CCL GCC CMC ATO COT CCL TM MO CMG TM CMG AT? GTO GTG CCCa ACA MAC TIA AM CCL COT TNT TIrC MGT GCC TrA CAT AGG3345

CCC TIC 0

FIG. 3. Sequence of the bisC gyene. The sequence of 3,336 bp within the 3.5-kbp Hincll fragment containingz the bisC gene is shown. Theposition and sequence of an open reading frame capable of encoding a polypeptide of 80,905 molecular weight are also shown.

Page 5: Cloning and nucleotide sequence of bisC, the structural gene for

2198 NOTES J. BACTERIOL.

We thank A. del Campillo-Campbell and M. Martin for strains andunpublished information.

This work was supported by Public Health Service grant A108573from the National Institute of Allergy and Infectious Diseases. D. E.Pierson was a recipient of a National Science Foundation graduatefellowship.

LITERATURE CITED1. Bilous, P., S. T. Cole, W. F. Anderson, and J. H. Weiner. 1988.

Nucleotide sequence of the dmsABC operon encoding theanaerobic dimethylsulphoxide reductase of Escherichia coli.Mol. Microbiol. 2:785-795.

2. Bilous, P. T., and J. H. Weiner. 1985. Dimethyl sulfoxidereductase activity by anaerobically grown Escherichia coliHB101. J. Bacteriol. 162:1151-1155.

3. Brot, N., L. Weissbach, J. Werth, and H. Weissbach. 1981.Enzymatic reduction of protein-bound methionine- sulfoxide.Proc. Natl. Acad. Sci. USA 78:2155-2158.

4. Campheil, A., A. del Campillo-CampbeUl, and D. Barker. 1978.Repression of biotin biosynthesis in Escherichia coli duringgrowth on biotin vitamers. J. Bacteriol. 135:90-98.

5. Casse, F. 1970. Mapping of the gene chl-B controlling membranebound nitrate reductase and formic hydrogen-lyase activities inEscherichia coli K-12. Biochem. Biophys. Res. Commun. 39:429-436.

6. Claassen, V. P., L. F. Oltmann, J. Van'T Riet, U. A. T.Brinkman, and A. H. Stouthamer. 1982. Purification of molyb-denum cofactor and its fluorescent oxidation products. FEBSLett. 142:133-137.

7. De Bruijn, F. J., and J. R. Lupski. 1984. The use of transposonTnS mutagenesis in the rapid generation of correlated physicaland genetic maps of DNA segments cloned into multicopyplasmids-a review. Gene 27:131-149.

8. del Campillo-Campbell, A., and A. Campbell. 1982. Molybde-num cofactor requirement for biotin sulfoxide reduction inEscherichia coli. J. Bacteriol. 149:469-478.

9. del Campillo-Campbell, A., D. Dykhuizen, and P. P. Cleary.1979. Enzymic reduction of d-biotin-d-sulfoxide to d-biotin.Methods Enzymol. 62:379-385.

10. Dubourdieu, M., E. Andrade, and J. Puig. 1976. Molybdenumand chlorate resistant mutants in Escherichia coli K12. Bio-chem. Biophys. Res. Commun. 70:766-773.

11. Ejiri, S.-I., H. Weissbach, and N. Brot. 1980. The purification ofmethionine sulfoxide reductase from Escherichia coli. Anal.Biochem. 102:393-398.

12. Engebrecht, J., K. Nealson, and M. Silverman. 1983. Bacterialbioluminescence: isolation and genetic analysis of functionsfrom Vibriofischeri. Cell 32:773-781.

13. Fridovich, I. 1974. Superoxide dismutases. Adv. Enzymol.41:35-97.

14. Glaser, J. H., and J. A. DeMoss. 1972. Comparison of nitratereductase mutants of Escherichia coli selected by alternativeprocedures. Mol. Gen. Genet. 116:1-10.

15. Grosjean, H., and W. Fiers. 1982. Preferential codon usage inprokaryotic genes: the optimal codon-anticodon interactionenergy and the selective codon usage in efficiently expressedgenes. Gene 18:199-209.

16. Haddock, B. A., and M. A. Mandrand-Berthelot. 1982. Esche-richia coli formate-to-nitrate respiratory chain: genetic analysis.Biochem. Soc. Trans. 10:478-480.

17. Henikoff, S. 1984. Undirectional digestion with exonucleaseIIIcreates targeted breakpoints for DNA sequencing. Gene 28:351-359.

18. Holmes, D. S., and M. Quigley. 1981. A rapid boiling method forthe preparation of bacterial plasmids. Anal. Biochem. 114:193-197.

19. Johnson, J. L., B. E. Hainline, and K. V. Rajagopalan. 1980.Characterization of the molybdenum cofactor of sulfite oxidase,xanthine oxidase, and nitrate reductase. J. Biol. Chem. 255:1783-1786.

20. Johnson, M. E., and K. V. Rajagopalan. 1987. Involvement ofchlA, E, M, and N loci in Escherichia coli molybdopterinbiosynthesis. J. Bacteriol. 169:117-125.

21. Karn, J., S. Brenner, J. Barnett, and G. Cesareni. 1980. Novelbacteriophage cloning vector. Proc. Natl. Acad. Sci. USA77:5172-5176.

22. Kyte, J., and R. F. Doolittle. 1982. A simple method fordisplaying the hydropathic character of a protein. J. Mol. Biol.157:105-132.

23. Laemmli, U. K. 1970. Cleavage of structural proteins during theassembly of the head of bacteriophage T4. Nature (London)227:680-685.

24. Maniatis, T., E. F. Fritsch, and J. Sambrook. 1982. Molecularcloning: a laboratory manual. Cold Spring Harbor Laboratory,Cold Spring Harbor, N.Y.

25. Melville, D. B. 1954. Biotin sulfoxide. J. Biol. Chem. 208:495-501.

26. Miller, J. H. 1972. Experiments in molecular genetics. ColdSpring Harbor Laboratory, Cold Spring Harbor, N.Y.

27. Paluh, J. L., and C. Yanofsky. 1986. High level production andrapid purification of the E. coli trp repressor. Nucleic AcidsRes. 14:7851-7860.

28. Puig, J., and E. Azoulay. 1967. Ittude genetique et biochimiquedes mutants resistant au C103- (genes chlA, chlB, chlC). C.R.Acad. Sci. 264:1916-1918.

29. Puig, J., E. Azoulay, and E. Pichinoty. 1967. ttude genetiqued'une mutation a effet pleiotrope chez l'Escherichia coli K12.C.R. Acad. Sci. 264:1507-1509.

30. Redfield, R. J., and A. M. Campbell. 1984. Origin of crypticlambda prophages in Escherichia coli K-12. Cold Spring HarborSymp. Quant. Biol. 49:199-206.

31. Sancar, A., A. M. Hack, and W. D. Rupp. 1979. Simple methodfor identification of plasmid-coded proteins. J. Bacteriol. 137:692-693.

32. Sanger, F., S. Nicklen, and A. R. Coulson. 1977. DNA sequenc-ing with chain terminating inhibitors. Proc. Natl. Acad. Sci.USA 74:5463-5467.

33. Shimada, K., R. A. Weisberg, and M. E. Gottesman. 1973.Prophage lambda at unusual chromosomal locations. II. Muta-tions induced by bacteriophage lambda in Escherichia coli K12.J. Mol. Biol. 80:297-314.

34. Shine, J., and L. Dalgarno. 1975. Determinant of cistron speci-ficity in bacterial ribosomes. Nature (London) 254:34-38.

35. Siebenlist, U. 1979. Nucleotide sequence of the three major earlypromoters of bacteriophage T4. Nucleic Acids Res. 6:1895-1907.

36. Sperl, G. T., and J. A. DeMoss. 1975. chlD gene function inmolybdate activation of nitrate reductase. J. Bacteriol. 122:1230-1238.

37. Stewart, V., and C. H. MacGregor. 1982. Nitrate reductase inEscherichia coli K-12: involvement of chlC, chlE, and chlG loci.J. Bacteriol. 151:788-799.

38. Takagi, M., T. Tsuchiya, and M. Ishimoto. 1981. Proton trans-location coupled to trimethylamine N-oxide reduction in anaer-obically grown Escherichia coli. J. Bacteriol. 148:762-768.

39. Vieira, J., and J. Messing. 1982. The pUC plasmids, anM13mp7-derived system for insertion mutagenesis and sequenc-ing with synthetic universal primers. Gene 19:259-268.

40. Yanisch-Perron, C., J. Vieira, and J. Messing. 1985. ImprovedM13 phage cloning vectors and host strains: nucleotide se-quence of the M13mpl8 and pUC19 vectors. Gene 33:103-119.

41. Zubay, G. 1973. In vitro synthesis of protein in microbialsystems. Annu. Rev. Genet. 7:267-287.