1
Introduc)on Mice treated with acarbose (ACA) con)nuously during adulthood, have a median lifespan approximately 20% and 5% longer in males and females, respec)vely [1]. By inhibi)ng the enzymes that normally degrade starch, ACA increases the quan)ty of polysaccharide entering the colon [2] leading to increased produc)on of short-chain faLy acids (SCFAs) by bacteria [3]. Given the documented benefits of SCFAs, we asked if changes in bacterial community composi)on and fermenta)on products of the gut were associated with increased lifespan in mice. This work was supported by NIA grant AG022303, a Burroughs Wellcome Fund training grant, and the Glenn Founda)on for Medical Research. Acknowledgments & Contact Changes in the gut microbiota and fermenta)on products associated with enhanced longevity in acarbose-treated mice. Byron J. Smith 1 , Richard A. Miller 1 , Aaron C. Ericsson 2 , Randy Strong 3 , David E. Harrison 4 , Thomas M. Schmidt 1 Cita)ons Conclusions 1 University of Michigan, 2 University of Missouri, 3 The University of Texas Health Science Center at San Antonio, and 4 The Jackson Laboratory University of Michigan 202-507-9572 [email protected] covariate log HR (standardized) P > |t| propionate -0.39 0.012 butyrate -0.54 0.030 acetate 0.46 0.041 fecal sample soluble frac)on HPLC DNA 16S Metagenome chemical func)onal taxonomic spike Future Analysis survival Results Methods [1] Harrison, D. E. et al. Acarbose, 17-α-estradiol, and nordihydroguaiare)c acid extend mouse lifespan preferen)ally in males. Aging Cell 13, 273–282 (2014). [2] Dehghan-Kooshkghazi, M. & Mathers, J. C. Starch diges)on, large-bowel fermenta)on and intes)nal mucosal cell prolifera)on in rats treated with the α-glucosidase inhibitor acarbose. Br. J. Nutr. 91, 357 (2004). [3] Holt, P. R. et al. Effects of acarbose on fecal nutrients, colonic pH, and short-chain faLy acids and rectal prolifera)ve indices. Metabolism. 45, 1179–1187 (1996). [4] Stämmler, F. et al. Adjus)ng microbiome profiles for differences in microbial load by spike-in bacteria. Microbiome 1–13 (2016). doi:10.1186/s40168-016-0175-0 [5] Ormerod, K. L. et al. Genomic characteriza)on of the uncultured Bacteroidales family S24-7 inhabi)ng the guts of homeothermic animals. Microbiome 4, 36 (2016). @ByronJSmith bsmith89 [email protected] ByronJSmith.com Surveys of the 16S rRNA gene confirm that ACA modulates the composi)on of the fecal bacterial community. A principle coordinate analysis based on Bray-Cur)s dissimilari)es (figure right) demonstrates the significant separa)on between control and treated mice while controlling for site and sex (p < 0.001). Communi)es at each site were also dis)nct (p < 0.001). The difference between treatment groups was dominated by large increases in the rela)ve abundance of two OTUs, designated OTU-1 and OTU-4 (figure below). The spike-adjusted abundance of the 16S rRNA gene from these taxa was greater in ACA. Both OTUs are classified as members of the largely uncultured family S24-7 in order Bacteroidales, which has previously been observed to be common in the gut of mice and to respond to dietary perturba)ons [5]. Along with shios in bacterial popula)ons, concomitant changes were observed in the metabolic profile, in par)cular increased SCFAs (figure right). Propionate was found to be subject to an interac)on between sex and treatment, resul)ng in a greater increase in propionate with ACA treatment in males than in females. Including concentra)ons of acetate, butyrate, and propionate in a Cox propor)onal hazards model, while controlling for treatment, site, and sex (table below) resulted in a substan)ally beLer fit to the data (ΔAIC = -3.5). Butyrate and propionate were associated with increased survival and acetate with reduced survival. Propionate was correlated with the abundance of S24-7 in both control and treated mice (p < 0.05 for both). The figure below plots the spike-adjusted abundance of 16S rRNA genes from OTUs classified as family S24-7 against the concentra)on of propionate. Reconstructed genomes have suggested that propionate produc)on is common in members of the S24-7 family [5]. Fecal metabolite profiles in mice treated with ACA were shioed towards increased butyrate and propionate concentra)ons, SCFAs linked with decreased inflamma)on and host health. Bacterial communi)es responded with large changes in composi<on, par)cularly favoring two OTUs in family S24-7. The 16S rRNA density of this family was associated with higher propionate concentra<ons. Fecal propionate, butyrate, and acetate concentra)ons were sta)s)cally significant predictors of mouse longevity while controlling for treatment. Future work is needed to (1) test a causal role for SCFAs in host longevity, (2) explain the high variability between samples, (3) and understand the drama)c increases in OTU-1 and OTU-4. At three sites, The University of Michigan (UM), University of Texas San Antonio Health Science Center (UT), and The Jackson Labs (TJL), mice were either fed a control diet, or the same diet amended with 1000 ppm ACA from 8 months of age onwards. Individual fecal samples were collected from mice between 762 and 973 days of age. At each site, samples from 24 control and 24 ACA treated mice were collected, with an equal number from males and females. Matched longevity data were collected for sampled mice from UM and UT. Metabolite measurements (HPLC) and bacterial community surveys (16S) were carried out on fecal samples. Samples were spiked with a constant quan)ty of Sphingopyxis alaskensis sta)onary phase culture before DNA extrac)on, enabling comparison of rRNA gene densi)es across samples [4]. Opera)onal taxonomic units (OTUs) were defined at a 97% similarity threshold. Longevity Starch Microbiota Acarbose SCFA Host Diges)on Digital Poster Control ACA TJL UM UT par)al R 2 = 9.5% par)al R 2 = 16.5% ACA ρ = 0.64 Control ρ = 0.36

Changes in the gut microbiota and fermentaon products ... · Introduc)on Mice treated with acarbose (ACA) con)nuously during adulthood, have a median lifespan approximately 20% and

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Page 1: Changes in the gut microbiota and fermentaon products ... · Introduc)on Mice treated with acarbose (ACA) con)nuously during adulthood, have a median lifespan approximately 20% and

Introduc)on

Micetreatedwithacarbose(ACA)con)nuouslyduringadulthood,haveamedianlifespanapproximately20%and5%longerinmalesandfemales,respec)vely[1].Byinhibi)ngtheenzymesthatnormallydegradestarch,ACAincreasesthequan)tyofpolysaccharideenteringthecolon[2]leadingtoincreasedproduc)onofshort-chainfaLyacids(SCFAs)bybacteria[3].GiventhedocumentedbenefitsofSCFAs,weaskedifchangesinbacterialcommunitycomposi)onandfermenta)onproductsofthegutwereassociatedwithincreasedlifespaninmice.

ThisworkwassupportedbyNIAgrantAG022303,aBurroughsWellcomeFundtraininggrant,andtheGlennFounda)onforMedicalResearch.

Acknowledgments&Contact

Changesinthegutmicrobiotaandfermenta)onproductsassociatedwithenhancedlongevityinacarbose-treatedmice.

ByronJ.Smith1,RichardA.Miller1,AaronC.Ericsson2,RandyStrong3,DavidE.Harrison4,ThomasM.Schmidt1

Cita)ons

Conclusions

than controls (Fig. 4A), while females fed EST were 6%, 7%, and 7%

lighter than controls (Fig. 4B).

Although EST is considered to be nonfeminizing, there is evidence

that it has similar affinity for estrogen receptors a and b (Toran-Allerand

et al., 2005) and can have uterotrophic effects (Clark et al., 1982). We

therefore tested for feminizing activity of the EST diet in a separate

population of young ovariectomized UM-HET3 mice at UT. EST fed to

ovariectomized mice for 6 weeks did not increase uterine weight or

cause cornification of the vaginal epithelium, indicating that at the dose

used in this study, EST had no detectable bioactivity in the female

reproductive tract.

Nordihydroguaiaretic acid (NDGA)

Starting at 6 months of age, male UM-HET3 mice were fed NDGA at

three different doses, 800, 2500, or 5000 mg kg!1 diet (referred to as

low, middle, or high-dose NDGA). Median survival of males was

increased significantly at each of the three doses, as evaluated using

the log-rank test. Estimates of the 90th percentile survival and statistical

tests of maximum lifespan are not yet available from this cohort of mice.

The middle dose led to increased male lifespan in a prior study (Strong

et al., 2008) and is replicated in our current independent cohort.

Figure 6A shows male interim survival curves pooled from all three sites.

At the time of writing, about 30% of the cohort is still alive, and the

youngest mice are approximately 850 days old; thus, the exact shapes of

the survival curves shown in Fig. 6 are not defined above 850 days. In

data pooled across sites, median lifespan for male controls was 787 days

and was increased to 851 (P = 0.04), 868 (P = 0.0053), and 860

(P = 0.0048) days in groups fed low, middle and high doses of NDGA.

NDGA was fed to females only at the high dose, 5000 mg kg!1, and

female survival curves, about 70% complete, were not affected

(Fig. 6B), with control and high-dose NDGA median lifespan 897 and

880 days, respectively. This is consistent with our previous study, in

which female lifespan was not affected by NDGA at 2500 mg kg!1, the

middle dose in males in the current study. Interim survivals at the three

sites are similar (Fig. S4), except that the high dose may reduce longevity

slightly at UM while the high dose is the best of the three at increasing

survival at TJL and UT. As in the previous cohort, survival of male controls

at TJL and UT is much shorter than at UM in the current cohort of mice.

(A) (B)

Fig. 1 Survival curves comparing controlsand mice fed Acarbose (ACA) for males (A)and females (B) pooled across the threesites. On this and other figures here,significance of differences between controland test mice are given as ‘P’ values oneach set of curves.

(A) (B) (C)

(D) (E) (F)

Fig. 2 Survival curves comparing controls and mice fed Acarbose (ACA) for males (A,B,C) and females (D,E,F) from each of the three sites: TJL (A,D), UM (B,E), and UT (C,F).

Male lifespan preferential benefit, D. E. Harrison et al. 275

ª 2013 The Authors. Aging Cell published by the Anatomical Society and John Wiley & Sons Ltd.

than controls (Fig. 4A), while females fed EST were 6%, 7%, and 7%

lighter than controls (Fig. 4B).

Although EST is considered to be nonfeminizing, there is evidence

that it has similar affinity for estrogen receptors a and b (Toran-Allerand

et al., 2005) and can have uterotrophic effects (Clark et al., 1982). We

therefore tested for feminizing activity of the EST diet in a separate

population of young ovariectomized UM-HET3 mice at UT. EST fed to

ovariectomized mice for 6 weeks did not increase uterine weight or

cause cornification of the vaginal epithelium, indicating that at the dose

used in this study, EST had no detectable bioactivity in the female

reproductive tract.

Nordihydroguaiaretic acid (NDGA)

Starting at 6 months of age, male UM-HET3 mice were fed NDGA at

three different doses, 800, 2500, or 5000 mg kg!1 diet (referred to as

low, middle, or high-dose NDGA). Median survival of males was

increased significantly at each of the three doses, as evaluated using

the log-rank test. Estimates of the 90th percentile survival and statistical

tests of maximum lifespan are not yet available from this cohort of mice.

The middle dose led to increased male lifespan in a prior study (Strong

et al., 2008) and is replicated in our current independent cohort.

Figure 6A shows male interim survival curves pooled from all three sites.

At the time of writing, about 30% of the cohort is still alive, and the

youngest mice are approximately 850 days old; thus, the exact shapes of

the survival curves shown in Fig. 6 are not defined above 850 days. In

data pooled across sites, median lifespan for male controls was 787 days

and was increased to 851 (P = 0.04), 868 (P = 0.0053), and 860

(P = 0.0048) days in groups fed low, middle and high doses of NDGA.

NDGA was fed to females only at the high dose, 5000 mg kg!1, and

female survival curves, about 70% complete, were not affected

(Fig. 6B), with control and high-dose NDGA median lifespan 897 and

880 days, respectively. This is consistent with our previous study, in

which female lifespan was not affected by NDGA at 2500 mg kg!1, the

middle dose in males in the current study. Interim survivals at the three

sites are similar (Fig. S4), except that the high dose may reduce longevity

slightly at UM while the high dose is the best of the three at increasing

survival at TJL and UT. As in the previous cohort, survival of male controls

at TJL and UT is much shorter than at UM in the current cohort of mice.

(A) (B)

Fig. 1 Survival curves comparing controlsand mice fed Acarbose (ACA) for males (A)and females (B) pooled across the threesites. On this and other figures here,significance of differences between controland test mice are given as ‘P’ values oneach set of curves.

(A) (B) (C)

(D) (E) (F)

Fig. 2 Survival curves comparing controls and mice fed Acarbose (ACA) for males (A,B,C) and females (D,E,F) from each of the three sites: TJL (A,D), UM (B,E), and UT (C,F).

Male lifespan preferential benefit, D. E. Harrison et al. 275

ª 2013 The Authors. Aging Cell published by the Anatomical Society and John Wiley & Sons Ltd.

1UniversityofMichigan,2UniversityofMissouri,3TheUniversityofTexasHealthScienceCenteratSanAntonio,and4TheJacksonLaboratory

UniversityofMichigan202-507-9572

[email protected]

covariate log HR(standardized)

P > |t|

propionate -0.39 0.012

butyrate -0.54 0.030

acetate 0.46 0.041

fecalsample solublefrac)on

HPLCDNA

16S Metagenome chemical

func)onaltaxonomic

spike

FutureAnalysis

survival

Results

Methods

[1]Harrison,D.E.etal.Acarbose,17-α-estradiol,andnordihydroguaiare)cacidextendmouselifespanpreferen)allyinmales.AgingCell13,273–282(2014).[2]Dehghan-Kooshkghazi,M.&Mathers,J.C.Starchdiges)on,large-bowelfermenta)onandintes)nalmucosalcellprolifera)oninratstreatedwiththeα-glucosidaseinhibitoracarbose.Br.J.Nutr.91,357(2004).[3]Holt,P.R.etal.Effectsofacarboseonfecalnutrients,colonicpH,andshort-chainfaLyacidsandrectalprolifera)veindices.Metabolism.45,1179–1187(1996).[4]Stämmler,F.etal.Adjus)ngmicrobiomeprofilesfordifferencesinmicrobialloadbyspike-inbacteria.Microbiome1–13(2016).doi:10.1186/s40168-016-0175-0[5]Ormerod,K.L.etal.Genomiccharacteriza)onoftheunculturedBacteroidalesfamilyS24-7inhabi)ngthegutsofhomeothermicanimals.Microbiome4,36(2016).

@ByronJSmith bsmith89

[email protected] ByronJSmith.com

Surveysofthe16SrRNAgeneconfirmthatACAmodulatesthecomposi)onofthefecalbacterialcommunity.AprinciplecoordinateanalysisbasedonBray-Cur)sdissimilari)es(figureright)demonstratesthesignificantsepara)onbetweencontrolandtreatedmicewhilecontrollingforsiteandsex(p<0.001).Communi)esateachsitewerealsodis)nct(p<0.001).

Thedifferencebetweentreatmentgroupswasdominatedbylargeincreasesintherela)veabundanceoftwoOTUs,designatedOTU-1andOTU-4(figurebelow).Thespike-adjustedabundanceofthe16SrRNAgenefromthesetaxawasgreaterinACA.BothOTUsareclassifiedasmembersofthelargelyunculturedfamilyS24-7inorderBacteroidales,whichhaspreviouslybeenobservedtobecommoninthegutofmiceandtorespondtodietaryperturba)ons[5].

Alongwithshiosinbacterialpopula)ons,concomitantchangeswereobservedinthemetabolicprofile,inpar)cularincreasedSCFAs(figureright).Propionatewasfoundtobesubjecttoaninterac)onbetweensexandtreatment,resul)nginagreaterincreaseinpropionatewithACAtreatmentinmalesthaninfemales.

Includingconcentra)onsofacetate,butyrate,andpropionateinaCoxpropor)onalhazardsmodel,whilecontrollingfortreatment,site,andsex(tablebelow)resultedinasubstan)allybeLerfittothedata(ΔAIC=-3.5).Butyrateandpropionatewereassociatedwithincreasedsurvivalandacetatewithreducedsurvival.

PropionatewascorrelatedwiththeabundanceofS24-7inbothcontrolandtreatedmice(p<0.05forboth).Thefigurebelowplotsthespike-adjustedabundanceof16SrRNAgenesfromOTUsclassifiedasfamilyS24-7againsttheconcentra)onofpropionate.Reconstructedgenomeshavesuggestedthatpropionateproduc)oniscommoninmembersoftheS24-7family[5].

•  FecalmetaboliteprofilesinmicetreatedwithACAwereshioedtowardsincreasedbutyrateandpropionateconcentra)ons,SCFAslinkedwithdecreasedinflamma)onandhosthealth.

•  Bacterialcommuni)esrespondedwithlargechangesincomposi<on,par)cularlyfavoringtwoOTUsinfamilyS24-7.The16SrRNAdensityofthisfamilywasassociatedwithhigherpropionateconcentra<ons.

•  Fecalpropionate,butyrate,andacetateconcentra)onsweresta)s)callysignificantpredictorsofmouselongevitywhilecontrollingfortreatment.

•  Futureworkisneededto(1)testacausalroleforSCFAsinhostlongevity,(2)explainthehighvariabilitybetweensamples,(3)andunderstandthedrama)cincreasesinOTU-1andOTU-4.

Atthreesites,TheUniversityofMichigan(UM),UniversityofTexasSanAntonioHealthScienceCenter(UT),andTheJacksonLabs(TJL),micewereeitherfedacontroldiet,orthesamedietamendedwith1000ppmACAfrom8monthsofageonwards.Individualfecalsampleswerecollectedfrommicebetween762and973daysofage.Ateachsite,samplesfrom24controland24ACAtreatedmicewerecollected,withanequalnumberfrommalesandfemales.MatchedlongevitydatawerecollectedforsampledmicefromUMandUT.

Metabolitemeasurements(HPLC)andbacterialcommunitysurveys(16S)werecarriedoutonfecalsamples.Sampleswerespikedwithaconstantquan)tyofSphingopyxisalaskensissta)onaryphaseculturebeforeDNAextrac)on,enablingcomparisonofrRNAgenedensi)esacrosssamples[4].Opera)onaltaxonomicunits(OTUs)weredefinedata97%similaritythreshold.

Longevity

Starch Microbiota

Acarbose

SCFAHost

Diges)on

DigitalPoster

Control

ACA

TJL

UM UT

par)alR2=9.5%

par)alR2=16.5%

ACAρ=0.64

Controlρ=0.36