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The web as a tool - rather than a threat

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The slides for a talk given at Leicester University Genetics Department on 14 October 2009

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Page 1: The web as a tool - rather than a threat

You are free to:

Copy, share, adapt, or re-mix;

Photograph, film, or broadcast;

Blog, live-blog, or post video of;

This presentation. Provided that:

You attribute the work to its author and respect the rights and licenses associated with its components.

Page 2: The web as a tool - rather than a threat

The Web as a Tool Rather Than a Threat

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About me.

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http://www.flickr.com/photos/andypowe11/3915450391

I live in Bath

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I work at RAL

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http://www.flickr.com/photos/andypowe11/3251538402

I get up in the morning

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http://www.flickr.com/photos/mattbuck007/3710451826

...and catch a train

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...and a bus

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...and get to do cool stuff

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Mixture of small-lab work...

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...and big facility experiments

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http://www.flickr.com/photos/loty/326761635

Lots of reading...

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http://www.flickr.com/photos/amagill/38961674

...meetings...

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http://www.flickr.com/photos/22819720@N02/2306780847

...too much travel...

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...which leads to too much of this

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http://www.flickr.com/photos/laprimadonna/3611292727/

The first step...

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...is to admit we have

http://www.flickr.com/photos/schnurrbart/43568532/ CC-BY-SA

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0

25,000,000,000

50,000,000,000

75,000,000,000

100,000,000,000

1982 1986 1990 1994 1998 2002 2006

Submissions to Genbank

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0

1.25

2.50

3.75

5.00

1982 1986 1990 1994 1998 2002 2006

Average Capacity of Human Scientist

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The human scientist(that’s us)

Does. Not. Scale.

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The web scales

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Those things you hate about the web?

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...these just show how well the web scales

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The web is full of pieces of other people’s work

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...so why doesn’t this work better for science?

I iz ur bandhangin in

ur gel

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Partly the tools...

http://www.flickr.com/photos/hinkelstone/1357630710

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...size of the community...

http://www.flickr.com/photos/craigcloutier/3818784742

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...and attitude

http://flickr.com/photos/zanotti/314391903/ CC-BY

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Let’s start with the tools...http://www.flickr.com/photos/flattop341/1085739925

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Are there any good web tools for science...?

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Literature management

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...but this is just aggregation

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Where’s the network?

http://www.flickr.com/photos/luc/2515255357

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Question #1

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Does it do something useful?

http://www.flickr.com/photos/vrogy/514733529

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If it doesn’t. It isn’t.

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Question #2

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Does it work for your group?

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If it doesn’t work here...

http://www.flickr.com/photos/respres/2476519142

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...then it won’t work here

http://www.flickr.com/photos/mararie/3313582639/ CC-BY-SA

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Question #3

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Is there a community that is useful to you there?

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...and if not are you prepared to build one?

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The skill for the 21st century scientist?

http://www.flickr.com/photos/victoriapeckham/164175205

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Network wiring and maintenance

http://www.flickr.com/photos/sneddon/2415792655

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A lot of the noise...

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...is maintaining connections

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You have to build it...

http://www.flickr.com/photos/luc/2515255357

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Founder effects.

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But does it work?

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An assertion.

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I am made aware of every significant document released and every funding opportunity in Europe and North America relating to web based social tools for science, open access publication, and data policies within 48 hours of their release.

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Without active searching.

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http://friendfeed.com

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http://tinyurl.com/dku869

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Pulling items from external services via RSS

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A shared social net

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Sharing the load

http://www.flickr.com/photos/joi/2941559903 CC-BY

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27 January 2009

http://gowers.wordpress.com/

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27 January 2009

February 1 2009

http://gowers.wordpress.com/

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27 January 2009

February 1 2009

March 10 2009

http://gowers.wordpress.com/ Nature, 15 October 2009

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Hundreds of thousands...

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200 individual measurements(plus 70 literature values)

20 researchers in four countriesOne undergraduate chemistry class

$6000 funding (for prizes and chemicals)

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Beautiful Data O’Reilly Media spreads the knowledge of innovators through its books, online services, magazines, research, and conferences. Get the information you need from the experts you trust; visit www.oreilly.com to purchase this book.

Get 30% OFF the print or ebook version of this book by entering discount code ABF09 at checkout.

Spreading the knowledge of innovators

©2009 O’Reilly Media, Inc. O’Reilly logo is a registered trademark of O’Reilly Media, Inc. 90562

Beautiful Data Edited by Toby Segaran & Je! HammerbacherJuly 2009, ISBN 9780596157111 382 pages, $44.99

oreilly.com

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Rapid.

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Efficient.

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Superficial?

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Lost in the stream...

http://flickr.com/photos/jason_burmeister/2053139930 CC-BY

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http://flickr.com/photos/virtualsugar/316200555/ CC-BY

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But if your objects are not open and available?

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The more you publish, the more embedded in the network

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Small, specific, examples. Relatively, few big wins

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And limited to certain domains

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50%

100%

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100%

50%

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100%

50%

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100%

50%

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100%

50%

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100%

50%

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100%

50%

We are still around here...

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...but the network is growing

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4

50%

3

2

1

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100%

50%

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4

50%

3

2

1

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So what to do?

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What is your problem?

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http://www.flickr.com/photos/flattop341/1085739925

Is there a good tool?

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http://www.flickr.com/photos/micha2305/2706588290/

Does it suit you/your group?

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http://www.flickr.com/photos/laffy4k/88836657

Is there a community?

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http://www.flickr.com/photos/nihilenz/2545518545

Are you willing to build one?

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Choose to publish more

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This is not going away

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Learn to cope.

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Threat or opportunity?

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[email protected]://blog.openwetware.org/scienceintheopenhttp://slideshare.net/cameronneylonTwitter: @cameronneylonFriendfeed: cameronneylon

Thanks to:Sciencetwists, Friendfeeders, and the wider online community for ideas, criticism, and conversations.

Deepak Singh, Larry Lessig, Andy Powell, and John Wilbanks for presentation inspiration.

Flickr (and in particular @andypowe11) for images