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Near-real time monitoring of habitat change using a neural network and MODIS data: the PARASID approach Andy Jarvis, Louis Reymondin, Jerry Touval

Andy Jarvis - Parasid Near Real Time Monitoring Of Habitat Change Tnc Slt

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Presentation made by Andy Jarvis from the Decision and Policy Analysis Program of the International Centre for Tropical Agriculture (CIAT). Delivered to the Science leadership Team in The Nature Conservancy (TNC) in December 2009.

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Page 1: Andy Jarvis - Parasid Near Real Time Monitoring Of Habitat Change Tnc Slt

Near-real time monitoring of habitat change using a neural network and MODIS data: the PARASID

approach

Andy Jarvis, Louis Reymondin, Jerry Touval

Page 2: Andy Jarvis - Parasid Near Real Time Monitoring Of Habitat Change Tnc Slt

Contents

• The approach

• The implementation

• Some examples

• What PARASID is, and what itis not

• Plans and timelines

Page 3: Andy Jarvis - Parasid Near Real Time Monitoring Of Habitat Change Tnc Slt

Objectives of PARASID

HUman Impact Monitoring And Natural Ecosystems

• Provide near-real time monitoring of habitatchange (<3 month turn-around)

• Continental – global coverage (forests AND non-forests)

• Regularity in updates

Page 4: Andy Jarvis - Parasid Near Real Time Monitoring Of Habitat Change Tnc Slt

The Approach

The change in greenness of a given pixel is a function of:

• Climate

• Site (vegetation, soil, geology)

• Human impact

Page 5: Andy Jarvis - Parasid Near Real Time Monitoring Of Habitat Change Tnc Slt

Machine learning

We therefore try to learn how each pixel (site) responds to climate, and any anomolycorresponds to human impact

Machine learning (or neural-network), is a bio-inspired technology which emulates the basic mechanism of a brain.

It allows – To find a pattern in noisy dataset– To apply these patterns to new dataset

Page 6: Andy Jarvis - Parasid Near Real Time Monitoring Of Habitat Change Tnc Slt

4500

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1 2 3 4 5 6 7 8 9Time

ND

VI

Measurments

Predictions

Interval max

Interval min

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NDVI Evolution and novelty detection

Novelty/Anomoly

Page 7: Andy Jarvis - Parasid Near Real Time Monitoring Of Habitat Change Tnc Slt

NDVI Cleaning using HANTS

Eliminate all short-term variations

Uses NDVI quality information

Iterative fitting of cleaned curve using

Fourier analysis

Least-square fitting to good quality values

Page 8: Andy Jarvis - Parasid Near Real Time Monitoring Of Habitat Change Tnc Slt

Methodology

NDVIt

Precipitation (t)

Temperature(t)

w0

w1

w2

NDVI(t-1)

NDVI(t-2)

NDVI(t-n)

wp1

wp2

wp3

wo1

wo2

wo3

As required by the ARD algorithm, each

input and the hidden output is a weights

class with its own αα0

αc

INPUTS: Past NDVI (MODIS 13Q1)Previous rainfall (TRMM)Temperature (WorldClim)

OUTPUT: 16 day predicted NDVI

Page 9: Andy Jarvis - Parasid Near Real Time Monitoring Of Habitat Change Tnc Slt

Methodology – Bayesian NN

• To detect novelties, Bayesian Neural Networks provide us two indicators

– The predicted value

– The probability repartition of where the value should be

• The first one allows us to detect abnormal measurements

• The second one allows us to say how sure we are a measurement is abnormal.

Page 10: Andy Jarvis - Parasid Near Real Time Monitoring Of Habitat Change Tnc Slt

The Processing

• For South America alone, first calculationsapproximated 10 years of processing for the NN tolearn:– A map of 30720 by 37440 pixels

• 1,150,156,800 vectors• 23 vectors per year• 26,453,606,400 NDVI values to manage per year• 9.5 years of data• 251,309,260,800 individual data points

• Through various processes, optimizations and hardware acquisitions reduced time to 2 weeks for NN learning

• Detection takes 1 day

Page 11: Andy Jarvis - Parasid Near Real Time Monitoring Of Habitat Change Tnc Slt

The Bottom-Line

• 250m resolution

• Latin American coverage (currently)

• 3 week turnaround from data being made available (4 week delay in MODIS going to NASA ftp) (3+4 = 7 weeks)

• Report every 16 days

• Measurement of scale of habitat change (0-1) and probability of event

Page 12: Andy Jarvis - Parasid Near Real Time Monitoring Of Habitat Change Tnc Slt

Parasid Test cases

Page 13: Andy Jarvis - Parasid Near Real Time Monitoring Of Habitat Change Tnc Slt

Introduction

• Different test cases with different vegetation and climate types

• All the test are done with the same parameters

– Training parameters• From 2000 to the end of 2003

– Detections parameters• From 2004 to May 2009

• A detection map is created each 16 days within this period

• The process is close to be fully automated

Page 14: Andy Jarvis - Parasid Near Real Time Monitoring Of Habitat Change Tnc Slt

Colombia – Río Caquetá

• Size

– 480 * 300 [km2]

– 14400000 [ha]

• Vegetation type

– Tropical forest

Page 15: Andy Jarvis - Parasid Near Real Time Monitoring Of Habitat Change Tnc Slt

Caqueta, Jan 2004 – May 2009Date

Page 16: Andy Jarvis - Parasid Near Real Time Monitoring Of Habitat Change Tnc Slt
Page 17: Andy Jarvis - Parasid Near Real Time Monitoring Of Habitat Change Tnc Slt

Colombia – Rio Caquetá

Cumulative detections in hectares

0

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Time

Hecta

res

Page 18: Andy Jarvis - Parasid Near Real Time Monitoring Of Habitat Change Tnc Slt

Paraguay - Boquerón

• Size

– 240*240 [km2]

– 5760000 [ha]

• Vegetation type

– Savannah

– Chaco forest

Page 19: Andy Jarvis - Parasid Near Real Time Monitoring Of Habitat Change Tnc Slt

Cumulative detection on time

Page 20: Andy Jarvis - Parasid Near Real Time Monitoring Of Habitat Change Tnc Slt

Paraguay - Boquerón

Cumulative detections in hectares

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Page 21: Andy Jarvis - Parasid Near Real Time Monitoring Of Habitat Change Tnc Slt

And now the tough one…

Page 22: Andy Jarvis - Parasid Near Real Time Monitoring Of Habitat Change Tnc Slt

OTCAAmazon Cooperation Treaty

• Size

– 4228.75*3498 [km2]

– 1479216750 [ha]

• Vegetation type

– Tropical forest

Page 23: Andy Jarvis - Parasid Near Real Time Monitoring Of Habitat Change Tnc Slt
Page 24: Andy Jarvis - Parasid Near Real Time Monitoring Of Habitat Change Tnc Slt

OTCAAmazon Cooperation Treaty

Cumulative detections in hectares

0

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Page 25: Andy Jarvis - Parasid Near Real Time Monitoring Of Habitat Change Tnc Slt

PARASID - Colombia

• Direct usage for developing negoatiation position of Colombia in Copenhagen

• September 2009 Colombia were going to COP15 with a figure of 100,000Ha/year deforestation

• PARASID analysis predicting MINIMUM 180,000Ha/year, most likely 250-300,000Ha/year

• Resulted in change in negotiation plan, and increased relevance of expansion of ChiribiquetiNP

• Discussions underway for PARASID to become a 1st tier monitoring tool for National Parks

Page 26: Andy Jarvis - Parasid Near Real Time Monitoring Of Habitat Change Tnc Slt

Deteccion Acumulada en Hectareas

0.92

0.94

0.96

0.98

0.90

0

500000

1000000

1500000

2000000

2500000

1/14/2004 5/28/2005 10/10/2006 2/22/2008 7/6/2009

Tiempo

Hecta

reas 0.96

Promedio

Prom + Desv

Prom - Desv

Detecciones

• 76% coverage of country

• Approx. 250,000Ha/year average

• 90% increase in deforestation rate 2004 - 2009

Page 27: Andy Jarvis - Parasid Near Real Time Monitoring Of Habitat Change Tnc Slt

Tinigua National Park

1,300 Ha deforested between 2004 y 20090.5% of total area deforested in 5 years

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Series1

Page 28: Andy Jarvis - Parasid Near Real Time Monitoring Of Habitat Change Tnc Slt

What PARASID is….

• 1st tier monitoring tool for looking at broad-scale patterns of habitat conversion

• National and regional platform for consistent measurement of habitat conversion

• Suitable early-warning system

• Important policy-influencing tool

Page 29: Andy Jarvis - Parasid Near Real Time Monitoring Of Habitat Change Tnc Slt

What PARASID is not…..

• Detailed monitoring tool for examining local-scale impacts and changes – 2nd and 3rd tier analyses are needed

• A system for monitoring steady degradation

Page 30: Andy Jarvis - Parasid Near Real Time Monitoring Of Habitat Change Tnc Slt

Outlook and next steps

• Three major pushes right now:1. Methodological development

• Long wish list….

2. Getting it out there• Adoption by countries

• Adoption by institutions

• Website and online data

3. Writing it up• Methodological paper imminent submission

• Latin American patterns in habitat change

• Effectiveness of Pas across the continent

• + many more…