The top documents tagged [overlapping reads]

GS-FLX Technology – How Does it Work? Deborah J. Hollingshead, MS Genomics Manager Genomics & Proteomics Core Laboratories University of Pittsburgh
Documents GS-FLX Technology – How Does it Work? Deborah J. Hollingshead, MS Genomics Manager Genomics & Proteomics Core Laboratories University of Pittsburgh

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Masurca genome assembly with super reads
Documents Masurca genome assembly with super reads

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CS273a Lecture 4, Autumn 08, Batzoglou Some Terminology insert a fragment that was incorporated in a circular genome, and can be copied (cloned) vector
Documents CS273a Lecture 4, Autumn 08, Batzoglou Some Terminology insert a fragment that was incorporated in a circular genome, and can be copied (cloned) vector

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CS262 Lecture 9, Win07, Batzoglou Fragment Assembly Given N reads… Where N ~ 30 million… We need to use a linear-time algorithm
Documents CS262 Lecture 9, Win07, Batzoglou Fragment Assembly Given N reads… Where N ~ 30 million… We need to use a linear-time algorithm

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CS262 Lecture 11, Win07, Batzoglou Some Terminology insert a fragment that was incorporated in a circular genome, and can be copied (cloned) vector the
Documents CS262 Lecture 11, Win07, Batzoglou Some Terminology insert a fragment that was incorporated in a circular genome, and can be copied (cloned) vector the

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CS273a Lecture 4, Autumn 08, Batzoglou Fragment Assembly (in whole-genome shotgun sequencing) CS273a Lecture 5
Documents CS273a Lecture 4, Autumn 08, Batzoglou Fragment Assembly (in whole-genome shotgun sequencing) CS273a Lecture 5

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Sequencing and Assembly Cont’d. CS273a Lecture 5, Win07, Batzoglou Steps to Assemble a Genome 1. Find overlapping reads 4. Derive consensus sequence..ACGATTACAATAGGTT
Documents Sequencing and Assembly Cont’d. CS273a Lecture 5, Win07, Batzoglou Steps to Assemble a Genome 1. Find overlapping reads 4. Derive consensus sequence..ACGATTACAATAGGTT

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CS273a Lecture 4, Autumn 08, Batzoglou Hierarchical Sequencing
Documents CS273a Lecture 4, Autumn 08, Batzoglou Hierarchical Sequencing

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Putting Together Alignments & Comparing Assemblies Michael Brudno Department of Computer Science University of Toronto 6.095/6.895 - Computational Biology:
Documents Putting Together Alignments & Comparing Assemblies Michael Brudno Department of Computer Science University of Toronto 6.095/6.895 - Computational Biology:

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Assembling Genomes BCH364C/391L Systems Biology / Bioinformatics – Spring 2015 Edward Marcotte, Univ of Texas at Austin Edward Marcotte/Univ. of Texas/BCH364C-391L/Spring
Documents Assembling Genomes BCH364C/391L Systems Biology / Bioinformatics – Spring 2015 Edward Marcotte, Univ of Texas at Austin Edward Marcotte/Univ. of Texas/BCH364C-391L/Spring

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De-novo Assembly Day 4. The Challenge Given many (millions or billions) of reads, produce a linear (or perhaps circular) genome Issues: – Coverage – Errors
Documents De-novo Assembly Day 4. The Challenge Given many (millions or billions) of reads, produce a linear (or perhaps circular) genome Issues: – Coverage – Errors

217 views

NGS Transcriptomic Workflows Hugh Shanahan & Jamie al-Nasir Royal Holloway, University of London
Documents NGS Transcriptomic Workflows Hugh Shanahan & Jamie al-Nasir Royal Holloway, University of London

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