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Comparative syntheses of Vancomycin

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Ian Mangion MacMillan Group Meeting September 28, 2005 http://www.princeton.edu/chemistry/macmillan/

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Page 1: Comparative syntheses of Vancomycin
Page 2: Comparative syntheses of Vancomycin

Structural Features of Vancomycin Type Glycopeptide Antibiotics

! Useful references

Hubbard, B. K.; Walsh, C. T. Angew. Chem. Int. Ed., 2003, 42, 730

! Generally characterized by an aryl-rich polypeptide backbone with varying crosslinking and glycosidation patterns

O

O O

HN

O

NH

O

NH

O

HN

O

Me

Me

NH2

Me

O

H2N

HN O

OH

NH

OH

HO

O

O2C

X

HO

Y

OH

O

OH

HOHO

O

O

MeHO

MeH2N

O

O O

HN

O

NH

O

NH

O

HN O

OH

NH

O

O

O

HO2C

Cl

HO

Cl

OH

O

OH

HOHO

NH

X = Y = Cl; VancomycinX = H, Y = Cl; EremomycinX = Y = H; Orienticin C

Kahne, D.; Leimkuhler, C.; Lu, W.; Walsh, C. Chem. Rev., 2005, 105, 425

Evans, D.; Wood, M. R.; rotter, W.; Richardson, T. I.; Barrow, J. C.; Katz, J. L. Angew. Chem. Int. Ed., 1998, 37, 2700

Nicolaou, K. C.; Mitchell, H. J.; Jain, N. F.; Winsigger, N.; Hughes, R.; Bando, T. Angew. Chem. Int. Ed., 1999, 38, 240

Boger, D. L.; Miyazaki, S.; Kim, S. H.; Wu, J. H.; Castle, S. L.; Loiseleur, O.; Jin, Q. J. Am. Chem. Soc., 1999, 121, 10004

NH

ONH2

HO

OH

O

O

OOHHO

HO

H2N

OHO

HO

OHOH

Teicoplanin

Page 3: Comparative syntheses of Vancomycin

Proposed Biosynthesis of Vancomycin-Type Glycopeptides

! The challenge to the synthetic chemist is immense: biosynthesis entails 35 total steps

! Remarkably, genes and proteins responsible for the biosynthesis of these molecules have been characterized

! Biosynthesis can be reduced to peptide elongation and post-translational modification

OMeMeO

H2NNHMe

O

Cl

OH

H2NOH

O

HO

H2NOH

O

OH

H2NOH

O

OH

HO OH

H2N

O

H2NOH

O

Me

H2NOH

O

Me

OR

O O

HN

O

NH

O

NH

O

HN

OMe

Me

NH2

Me

O

H2N

HN O

OH

NH

OH

HO

O

O2C

HO

OH

Cl

ClOR

HN

O

NH

O

NH

O

HN

OMe

Me

NH2

Me

O

H2N

HN O

OH

NH

OH

HO

O

O2C

HO

OH

Cl

OH

H2NOH

O

HO

HO OH

OH

ClOH

Cl

[O]

Page 4: Comparative syntheses of Vancomycin

Biological Activity (Gram-Positive Bacteria)

! Disruption of just one of the five hydrogen bonds leads to a 1000-fold loss in activity

! Vancomycin inhibits cell wall cross-linking through tight binding, eventually leading to cell lysis

OR

O O

HN

O

N

O

N

O

N

OMe

Me

NH2

Me

O

H2N

HN O

OH

N

OH

HO

O

O2C

HO

OH

Cl

Cl

O

NH

O

Me

N

Me

O

O

H

HH

H H

OR

O O

HN

O

N

O

N

O

N

OMe

Me

NH2

Me

O

H2N

HN O

OH

N

OH

HO

O

O2C

HO

OH

Cl

Cl

O

NH

O

Me

O

Me

O

O

HH

H H

(resistance)Alanine dimer - normally linkedto glycan outer wall of cell

Page 5: Comparative syntheses of Vancomycin

The Evans Design

! This strategy relies on atropdiastereoselective macrocyclizations

! Chiral auxiliary technology will be used to create most amino acid stereocenters

OH

O O

HN

O

NH

O

NH

O

HN

OMe

Me

NH

Me

O

H2N

HN O

OH

NH

OH

HO

O

HO2C

HO

OH

Cl

Cl Oallyl

O

HN

O

NH

O

NH

O

HN

OMe

Me

NMeBoc

O

DdmHN

HN O

OBn

NH

OBn

HO

O

BnO

Cl

O

MeHN

HO

F

NO2

OH

Oallyl

O

HN

O

NH2

HN O

OH

NH

OH

HO

O

HO2C

HO

Cl

OHOallyl

HO

HN

O

NHBoc

HN O

OBn

NH

OBn

O

BnO

O

MeHN

OMs

OH

F

O2N

Cl

Page 6: Comparative syntheses of Vancomycin

Oxazolidinone-Based Amino Acid Synthesis

! This strategy is applied to all arylglycines in the Evans synthesis

! Chiral auxiliary approach creates labile arylglycine stereocenters in controlled fashion

N O

O

Bn

O

R

N O

O

Bn

O

R

B

Bu Bu

N O

O

Bn

O

R

Br

NBS

-78 °C

XN3

X = tetramethyl guanidinium

N O

O

Bn

O

R

N3

dr 91:9 - >99:1

TrisN3;

HOAc

Tris = 2,4,6-triisopropyl phenyl

N O

O

Bn

O

R

N3

N O

O

Bn

O

R KHMDS

N O

O

Bn

O

R

K

dr 91:9 - >99:1

SnCl2;

Boc2O

N O

O

Bn

O

R

BocHN

Evans, JACS, 4011, 1990

Page 7: Comparative syntheses of Vancomycin

Oxazolidinone-Based Amino Acid Synthesis

! The auxiliary approach proves unsuccessful for the central resorcinol-type arylglycine

OMeMeO

H2NNHMe

OBocHN

OH

O

OH

BocHNOH

O

Oallyl

TBSO OMs

BnO

NH2

HO

O

OH

1) Br2

2) Boc2O

3) NaH,AllylBr NHBoc

HO

O

Oallyl

BrBr

1) BuOCOCl, NMM, MeNH2

2) MeMgCl; tBuLi; B(OMe)3; H2O2

70% yield

NHBocMeHN

O

Oallyl

OHBr

74% yield

1) TBSCl2) MeMgCl; tBuLi; B(OMe)3; H2O2

NHBocMeHN

O

Oallyl

OTBSHO1) MsCl2) Boc2O

3) HF•pyr

NHBocMeN

O

Oallyl

OHMsO

Boc

1

1

1) LiOOH

2) TBSCl

Page 8: Comparative syntheses of Vancomycin

Synthesis of the Left Macrocycle

! Oxazolidinone methodology is employed to stereoselectively access a protected amino alcohol

1) Boc2O; HCO2H, H2O2

2) LiOOH

NO

O

Bn

O

NCS

Cl

F

O2N

H

O

Sn(OTf)2, NMP

THF, -78 °CNO

O

Bn

O

NCS

Sn

TfO OTf

N

O

O

Bn

ONH

O

Cl

F

O2NS 19:1 dr

OH

ON

O

Cl

F

O2NO

46% frombenzaldehyde

MeO OMe

NH2•TFA

O

MeHN

EDCI•HCl, HOBt, 0 °C

MeO OMe

NH

O

MeHN

ON

O

Cl

F

O2NO

72% yield

Boc

Boc

Page 9: Comparative syntheses of Vancomycin

Synthesis of the Left Macrocycle

! Functional group adjustment and amino acid coupling

NHBoc

O

HO

EDCI•HCl, HOBt, 0 °C

MeO OMe

NH

O

MeHN

ON

O

Cl

F

O2NO

OH

O O

HN

O

NH

O

NH

O

HN

OMe

Me

NH

Me

O

H2N

HN O

OH

NH

OH

HO

O

HO2C

HO

OH

Cl

Cl

OMe

OBn

2) TFA, DMS, CH2Cl2;

1) Li2CO3, MeOH

Boc

MeO OMe

NH

O

MeHN

O

Cl

F

O2NOH

NH

NHBoc

O

OMe

OBn

82% yield

Page 10: Comparative syntheses of Vancomycin

Synthesis of the Left Macrocycle

! Oxidative coupling provides undesired atropisomer

OH

O O

HN

O

NH

O

NH

O

HN

OMe

Me

NH

Me

O

H2N

HN O

OH

NH

OH

HO

O

HO2C

HO

OH

Cl

Cl

1) TFA, DMS; TFAA

MeO OMe

NH

O

MeHN

O

Cl

F

O2NOH

NH

NHBoc

O

OMe

OBn

65% yield, 19:1 dr

2) VOF3, BF3•Et2O, AgBF4, TFA/CH2Cl2; NaBH(OAc)3

! Vanadium serves as oxidant, BF3 as trap for oxygen nucleophiles, silver as trap for chloride ion impurities, TFA as part of solvent mixture, NaBH(OAc)3 as reductive quench

NHTFA

HN O

NH

OO

MeHN

OH

F

O2N

Cl

see: Evans,JACS, 6426 1993

MeO OMe

OH

OMe

Page 11: Comparative syntheses of Vancomycin

Synthesis of the Left Macrocycle

! Oxidative coupling proceeds via radical cation

OH

O O

HN

O

NH

O

NH

O

HN

OMe

Me

NH

Me

O

H2N

HN O

OH

NH

OH

HO

O

HO2C

HO

OH

Cl

Cl

1) TFA, DMS; TFAA

MeO OMe

NH

O

MeHN

O

Cl

F

O2NOH

NH

NHBoc

O

OMe

OBn2) VOF3, BF3•Et2O, AgBF4, TFA/CH2Cl2; NaBH(OAc)3

NHTFA

HN O

NH

OO

MeHN

OH

F

O2N

Cl

see: Evans,JACS, 6426 1993

MeO OMe

OH

OMe

MeO OMe

NH

O

MeHN

ONH

NHBoc

O

OMe

OBn

NHTFA

HN O

NH

OO

MeHN

MeO OMe

OBn

OMe

Page 12: Comparative syntheses of Vancomycin

Synthesis of the Left Macrocycle

! Careful coupling introduces the central aryl fragment

OH

O O

HN

O

NH

O

NH

O

HN

OMe

Me

NH

Me

O

H2N

HN O

OH

NH

OH

HO

O

HO2C

HO

OH

Cl

Cl

1) NaHCO3, MeOH, 6 d

NHTFA

HN O

NH

OO

MeHN

OH

F

O2N

Cl

MeO OMe

OH

OMe

2) HATU, HOAt, collidine CH2Cl2/DMF, -20 °C

N N

N

N

ON

N

Me

Me

MeMe

HATU

HOAt

TBSO

Oallyl

OMs

HO2C NHBoc

HN

HN O

NH

OO

MeHN

OH

F

O2N

Cl

MeO OMe

OH

OMe

TBSO

Oallyl

OMs

NHBoc

O

65% yield

Page 13: Comparative syntheses of Vancomycin

Synthesis of the Left Macrocycle

! Macrocyclization occurs with good selectivity

OH

O O

HN

O

NH

O

NH

O

HN

OMe

Me

NH

Me

O

H2N

HN O

OH

NH

OH

HO

O

HO2C

HO

OH

Cl

Cl

1) HF•pyridine2) Na2CO3, DMSO; PhNTf2

3) Zn0, AcOH

4) NaNO2, H3PO2,

cat. Cu2O

HN

HN O

NH

OO

MeHN

OH

F

O2N

Cl

MeO OMe

OH

OMe

TBSO

Oallyl

OMs

NHBoc

O

62% yield5:1 dr

(10:1 dr w/o Cl)

HN

HN O

NH

OO

MeHN

MeO OMe

OTf

OMe

O

Oallyl

OMs

NHBoc

O

HO

Cl

Page 14: Comparative syntheses of Vancomycin

Synthesis of the Left Macrocycle

! Thermal equilibration provides the desired atropisomer

OH

O O

HN

O

NH

O

NH

O

HN

OMe

Me

NH

Me

O

H2N

HN O

OH

NH

OH

HO

O

HO2C

HO

OH

Cl

Cl

1) Pd(dppf)Cl2, HCOH, DMF, 75 °C

4) AlBr3, EtSH5) MeOH, 55 °C

44% yield19:1 dr

HN

HN O

NH

OO

MeHN

MeO OMe

OTf

OMe

O

Oallyl

OMs

NHBoc

O

HO

Cl2) Piv Cl3) TFA, DMS; TFAA

OPiv

O

HN

O

NHTFA

HN O

OH

NH

OH

HO

O

HO

Cl

see: Evans,JACS, 6426 1993

OMs

MeHN

O

Page 15: Comparative syntheses of Vancomycin

Synthesis of the Left Macrocycle

! Thermal equilibration provides the desired atropisomer

OH

O O

HN

O

NH

O

NH

O

HN

OMe

Me

NH

Me

O

H2N

HN O

OH

NH

OH

HO

O

HO2C

HO

OH

Cl

Cl

1) BnBr, Cs2CO3

2) LiSEt, THF, 0 °C

3) allyl-Br, Cs2CO3

4) LDA, -78 °C5) LiOH, THF/MeOH

65% yield

OPiv

O

HN

O

NHTFA

HN O

OH

NH

OH

HO

O

HO

Cl

OMs

MeHN

O

OPiv

O

HN

O

NH2

HN O

OBn

NH

OBn

HO

O

BnO

Cl

OH

MeHN

O

Page 16: Comparative syntheses of Vancomycin

Synthesis of the Right Macrocycle

! Fragment coupling completes the peptide chain

OH

O O

HN

O

NH

O

NH

O

HN

OMe

Me

NH

Me

O

H2N

HN O

OH

NH

OH

HO

O

HO2C

HO

OH

Cl

Cl

EDCI, HOAt, THF, 0 °C

OPiv

O

HN

O

NH2

HN O

OBn

NH

OBn

HO

O

BnO

Cl

OH

MeHN

O

For synthesis of tripeptide, see Nicolaou Classics II, p. 290Ddm

OMeMeO

HO2CHN

O

NH

NHDdm

OO

CH2CHMe2

NMeBoc

HO

F

NO2

OPiv

O

HN

O

NH

HN O

OBn

NH

OBn

HO

O

BnO

Cl

OH

MeHN

O

HN

O

NH

NHDdm

OO

CH2CHMe2

NMeBoc

HO

F

NO2O

86% yield

Page 17: Comparative syntheses of Vancomycin

Synthesis of the Right Macrocycle

! Closure of the second macrocycle proceeds with the desired atropdiastereoselectivity

OH

O O

HN

O

NH

O

NH

O

HN

OMe

Me

NH

Me

O

H2N

HN O

OH

NH

OH

HO

O

HO2C

HO

OH

Cl

Cl

1) CsF, DMSO

2) Zn0, AcOH

3) HBF4, tBuONO,

MeCN; CuCl/CuCl2

Oallyl

O

HN

O

NH

HN O

OBn

NH

OBn

HO

O

BnO

Cl

OH

MeHN

O

HN

O

NH

NHDdm

OO

CH2CHMe2

NMeBoc

HO

F

NO2O

60% yield5:1 dr

Oallyl

O O

HN

O

NH

O

NH

O

HN

O

Me

Me

NMeBoc

O

DdmHN

HN O

OBn

NH

OBn

HO

O

BnO

OH

Cl

Cl

MeHN

O

Page 18: Comparative syntheses of Vancomycin

Synthesis of the Right Macrocycle

! Closure of the second macrocycle proceeds with the desired atropdiastereoselectivity

OH

O O

HN

O

NH

O

NH

O

HN

OMe

Me

NH

Me

O

H2N

HN O

OH

NH

OH

HO

O

HO2C

HO

OH

Cl

Cl

1) CsF, DMSO

2) Zn0, AcOH

3) HBF4, tBuONO,

MeCN; CuCl/CuCl2

Oallyl

O

HN

O

NH

HN O

OBn

NH

OBn

HO

O

BnO

Cl

OH

MeHN

O

HN

O

NH

NHDdm

OO

CH2CHMe2

NMeBoc

HO

F

NO2O

60% yield5:1 dr

Oallyl

O O

HN

O

NH

O

NH

O

HN

O

Me

Me

NMeBoc

O

DdmHN

HN O

OBn

NH

OBn

HO

O

BnO

OH

Cl

Cl

MeHN

O

Mechanism for Sandmeyer reaction not fully known, but may be as follows:

ArN2+ X-

+ CuX Ar + N2 + CuX2

Ar + CuX2 ArX + CuX

Page 19: Comparative syntheses of Vancomycin

Completion of Vancomycin

! An unusual mild deprotection reveals a carboxylic acid

OH

O O

HN

O

NH

O

NH

O

HN

OMe

Me

NH

Me

O

H2N

HN O

OH

NH

OH

HO

O

HO2C

HO

OH

Cl

Cl

1) N2O4, NaOAc

2) H2O2, LiOH

68% yield

Oallyl

O O

HN

O

NH

O

NH

O

HN

O

Me

Me

NMeBoc

O

DdmHN

HN O

OBn

NH

OBn

HO

O

BnO

OH

Cl

Cl

MeHN

O

! Nitrosation in the presence of seven amide functionalities

Oallyl

O O

HN

O

NH

O

NH

O

HN

O

Me

Me

NMeBoc

O

DdmHN

HN O

OBn

NH

OBn

HO

O

BnO

OH

Cl

Cl

HO

O

Page 20: Comparative syntheses of Vancomycin

Completion of Vancomycin

! Final deprotection proves uneventful

OH

O O

HN

O

NH

O

NH

O

HN

OMe

Me

NH

Me

O

H2N

HN O

OH

NH

OH

HO

O

HO2C

HO

OH

Cl

Cl

1) Pd(PPh3)4

2) Pd/C, EtOH,1,4-cyclohexadiene3) TFA, DMS, CH2Cl2

62% yield

! Completion of vancomycin aglycon in 40 linear steps

Oallyl

O O

HN

O

NH

O

NH

O

HN

O

Me

Me

NMeBoc

O

DdmHN

HN O

OBn

NH

OBn

HO

O

BnO

OH

Cl

Cl

HO

O

OH

O O

HN

O

NH

O

NH

O

HN

O

Me

Me

NMe

O

H2N

HN O

OH

NH

OH

HO

O

HO

OH

Cl

Cl

HO

O

Evans, Wood, Trotter, Richardson, Barrow, Katz ACIEE, 1998, 2700

Page 21: Comparative syntheses of Vancomycin

The Nicolaou Design

! Atropdiastereoselctivity left unaddressed in the design

! Sharpless asymmetric catalysis will be used to create most amino acid stereocenters

OH

O O

HN

O

NH

O

NH

O

HN

OMe

Me

NH

Me

O

H2N

HN O

OH

NH

OH

HO

O

HO2C

HO

OH

Cl

ClN

O

HN

O

NH2

O

NH

O

HN

OMe

Me

NMeBoc

O

DdmHN

HN O

OMe

NH

OMe

TBSO

O

MeO

Cl

BnO

TBSO

OH

Cl

Br

N

N

HO

N

Br

HO

O

NH2

HN O

OMe

NH

OMe

TBSO

O

MeO

Cl

BnO

Br

N

N

OH

NH2

MeO O

OMe

OH

OMe

MeO

BnO

NHBoc

Page 22: Comparative syntheses of Vancomycin

Dihydroxylation/Aminohydroxylation Based Approach

! Enantioenrichment attained through amino acid coupling

! Sharpless methodology used to create aryl amino acid stereocenters

MeO OMe

O H

1) Ph2P=CH2

2) AD-mix-!

MeO OMe

HOOH

84% yield, 96% ee

1) (n-Bu)2SnO, BnBr, TBAI, 70 °C

2) n-BuLi; B(OMe)3

MeO OMe

BnOO

B OH

49% yield

OBn

OEt

O

(2 steps)

NaOH, tBuOCl BnOCONH2

(DHQD)2AQN

K2OsO2(OH)4

nPrOH/H2O

OBn

OEt

O

HO

NHCbz

1) TBSOTf, lutidene

2) H2, Pd/C3) SO2Cl2

OBn

OEt

O

TBSO

NH2

45% yield, 87% ee78% yield

Cl

Page 23: Comparative syntheses of Vancomycin

Dihydroxylation/Aminohydroxylation Based Approach

! As in the Evans synthesis, creating the central fragment is challenging

NH2

1) SOCl2, MeOH

2) Br2, AcOH

98% yield

1) LAH, THF, 0 °C2) NaNO2, 6 M HCl,

AcOH/H2O, 0 °C;KOH, pyrrolidine

OHO

NH2

OMeO

BrBr

71% yield

N

HO

BrBr

N

N

1) PCC, CH2Cl22) Ph3P=CH2, THF3) AD-mix-!, tBuOH/H2O4) TBSCl, imidazole

N

BrBr

N

N

TBSOOH

72% yield95% ee

1) PPh3, DEAD, DPPA, 0 °C

2) PPh3, H2O, 60 °C

N

BrBr

N

N

TBSONH2

P

O

N3

PhOPhO

DPPA

1) Boc2O, TEA2) TBAF, THF

3) TEMPO, NaOCl, KBr, NaHCO3

N

BrBr

N

N

HONHBoc

O

68% yield70% yield

Page 24: Comparative syntheses of Vancomycin

Nicolaou's Triazene-Driven Ether Synthesis

! Triazene serves to activate aryl ring for SNAr and acts as functional handle for phenol

N

BrBr

N

N

NH

O

Me

HN

O

OH

NHBoc

K2CO3

CuBr•Me2Spyridine

N

BrBr

N

N

NH

O

Me

HN

O

NHBoc

OCu

-KBr

K+

N

Br

N

N

NH

O

Me

HN

O

O

NHBoc

54% yieldaq. HCl

OH

Br

NH

O

Me

HN

O

O

NHBoc

Nicolaou, JACS, 119, 1997, 3421

Page 25: Comparative syntheses of Vancomycin

Approach to the Left Macrocycle

! A Suzuki coupling builds the biaryl bond

OH

O O

HN

O

NH

O

NH

O

HN

OMe

Me

NH

Me

O

H2N

HN O

OH

NH

OH

HO

O

HO2C

HO

OH

Cl

Cl

BnO

MeO OMe

O

B OH

O

MeONHBoc

I

OMe

Pd(PPh3)4

Toluene/H2O90 °C

BnO

OH

OMe

OMe

MeO

MeO

O

NHBoc

87% yield2:1 dr

1) DPPA, DEAD Ph3P, THF, -20 °C2) LiOH, THF/H2O

BnO

N3

OMe

OMe

MeO

HO

O

NHBoc

94% yield

1) EDC, HOAt THF, -30-> -10 °C

NH

EtO2C

TBSO

Cl

OH

NH2EtO2C

TBSO

Cl

OH

BnO

N3

OMe

OMe

MeO

O

NH280% yield

2) TMSOTf, lutidene

Page 26: Comparative syntheses of Vancomycin

Approach to the Left Macrocycle

! Peptide coupling sets up biaryl ether synthesis

OH

O O

HN

O

NH

O

NH

O

HN

OMe

Me

NH

Me

O

H2N

HN O

OH

NH

OH

HO

O

HO2C

HO

OH

Cl

Cl

NH

EtO2C

TBSO

Cl

OH

BnO

N3

OMe

OMe

MeO

O

NH2

EDC, HOAtTHF, 0 °C

NN

N

BrBr

O

HONHBoc

NH

EtO2C

TBSO

Cl

OH

BnO

N3

OMe

OMe

MeO

OHN

NN

N

BrBr

O

NHBoc

90% yield

Page 27: Comparative syntheses of Vancomycin

Closure of the Left Macrocycle

! Ether formation proceeds without atropdiastereoselectivity

OH

O O

HN

O

NH

O

NH

O

HN

OMe

Me

NH

Me

O

H2N

HN O

OH

NH

OH

HO

O

HO2C

HO

OH

Cl

Cl

1) CuBr, K2CO3

MeCN, 82 °C

2) TBAF, -15 °C3) Et3P, MeCN/H2O4) LiOH, THF/H2ON

HEtO2C

TBSO

Cl

OH

BnO

N3

OMe

OMe

MeO

OHN

NN

N

BrBr

O

NHBoc

46% yield1:1 dr

NH

HO2C

HO

BnO

NH2

OMe

OMe

MeO

OHN

NN

N

Br

O

NHBoc

O

Cl

Page 28: Comparative syntheses of Vancomycin

Amide Formation and Deprotection

! Completion of the left half achieved via lactamization

OH

O O

HN

O

NH

O

NH

O

HN

OMe

Me

NH

Me

O

H2N

HN O

OH

NH

OH

HO

O

HO2C

HO

OH

Cl

Cl

1) FDPP, DIPEADMF, 0-> 25 °C

70% yield

NH

HO2C

HO

BnO

NH2

OMe

OMe

MeO

OHN

NN

N

Br

O

NHBoc

O

2) TBSOTf, lutidene3) TMSOTf, lutidene

N

O

HN

O

NH2

HN O

OMe

NH

OMe

HO

O

MeO

Cl

Br

BnO

Cl

N

N

O

PPhO

PhO O

F

F

F

F

FFDPP

Page 29: Comparative syntheses of Vancomycin

Synthesis of the Right Macrocycle

! Fragment coupling completes the peptide chain

OH

O O

HN

O

NH

O

NH

O

HN

OMe

Me

NH

Me

O

H2N

HN O

OH

NH

OH

HO

O

HO2C

HO

OH

Cl

Cl

EDCI, HOBt, THF, 0 °C

N

O

HN

O

NH2

HN O

OMe

NH

OMe

TBSO

O

MeO

Cl

Br

BnO

For synthesis of tripeptide, see Nicolaou Classics II, p. 268

HO2CHN

O

NH

NHDdm

OO

CH2CHMe2

NMeBoc

TBSO

OH

Cl

N

O

HN

O

NH

HN O

OMe

NH

OMe

TBSO

O

MeO

Cl

Br

BnO

HN

O

NH

NHDdm

OO

CH2CHMe2

NMeBoc

TBSO

OH

ClO

86% yield

N

N

N

N

Page 30: Comparative syntheses of Vancomycin

Synthesis of the Right Macrocycle

! Triazene-activated ether formation favors unnatural atropisomer; thermal equilibration is possible

OH

O O

HN

O

NH

O

NH

O

HN

OMe

Me

NH

Me

O

H2N

HN O

OH

NH

OH

HO

O

HO2C

HO

OH

Cl

Cl

N

O

HN

O

NH

HN O

OMe

NH

OMe

TBSO

O

MeO

Cl

Br

BnO

HN

O

NH

NHDdm

OO

CH2CHMe2

NMeBoc

TBSO

OH

ClO

74% yield1:3 dr

N

N

N

O O

HN

O

NH

O

NH

O

HN

O

Me

Me

NMeBoc

O

DdmHN

HN O

OMe

NH

OMe

TBSO

O

MeO

OTBS

Cl

Cl

N

N

BnO

CuBr, K2CO3

MeCN, 82 °C

! Heating unnatural isomer at 140 °C provides 2:3 mix in 80-85% yield

Page 31: Comparative syntheses of Vancomycin

Final Functionalizations

! Triazene proves difficult to functionalize as phenol

OH

O O

HN

O

NH

O

NH

O

HN

OMe

Me

NH

Me

O

H2N

HN O

OH

NH

OH

HO

O

HO2C

HO

OH

Cl

Cl

N

O O

HN

O

NH

O

NH

O

HN

O

Me

Me

NMeBoc

O

DdmHN

HN O

OMe

NH

OMe

TBSO

O

MeO

OTBS

Cl

Cl

N

N

BnO

1) Raney Ni, MeOH2) H2, Pd(OH)2

NH2

O O

HN

O

NH

O

NH

O

HN

O

Me

Me

NMeBoc

O

DdmHN

HN O

OMe

NH

OMe

TBSO

O

MeO

OTBS

Cl

Cl

HO

Page 32: Comparative syntheses of Vancomycin

Final Functionalizations

! Triazene proves difficult to functionalize as phenol

OH

O O

HN

O

NH

O

NH

O

HN

OMe

Me

NH

Me

O

H2N

HN O

OH

NH

OH

HO

O

HO2C

HO

OH

Cl

Cl

N

O O

HN

O

NH

O

NH

O

HN

O

Me

Me

NMeBoc

O

DdmHN

HN O

OMe

NH

OMe

TBSO

O

MeO

OTBS

Cl

Cl

N

N

BnO

1) Raney Ni, MeOH2) H2, Pd(OH)2

I

O O

HN

O

NH

O

NH

O

HN

O

Me

Me

NMeBoc

O

DdmHN

HN O

OMe

NH

OMe

TBSO

O

MeO

OTBS

Cl

Cl

HO

3) HBF4, iPrONO4) KI, 25 °C

Page 33: Comparative syntheses of Vancomycin

Final Functionalizations

! Triazene proves difficult to functionalize as phenol

OH

O O

HN

O

NH

O

NH

O

HN

OMe

Me

NH

Me

O

H2N

HN O

OH

NH

OH

HO

O

HO2C

HO

OH

Cl

Cl

N

O O

HN

O

NH

O

NH

O

HN

O

Me

Me

NMeBoc

O

DdmHN

HN O

OMe

NH

OMe

TBSO

O

MeO

OTBS

Cl

Cl

N

N

BnO

1) Raney Ni, MeOH2) H2, Pd(OH)2

OH

O O

HN

O

NH

O

NH

O

HN

O

Me

Me

NMeBoc

O

DdmHN

HN O

OMe

NH

OMe

TBSO

O

MeO

OTBS

Cl

Cl

HO

3) HBF4, iPrONO4) KI, 25 °C5) MeMgBr (30 eq) iPrMgBr (30 eq); B(OMe)3 (100 eq); H2O2

32% yield

Page 34: Comparative syntheses of Vancomycin

Final Functionalizations

! Phenol protection and introduction of methyl ester

OH

O O

HN

O

NH

O

NH

O

HN

OMe

Me

NH

Me

O

H2N

HN O

OH

NH

OH

HO

O

HO2C

HO

OH

Cl

Cl

1) Cs2CO3, MeI2) Dess-Martin

OMe

O O

HN

O

NH

O

NH

O

HN

O

Me

Me

NMeBoc

O

DdmHN

HN O

OMe

NH

OMe

TBSO

O

MeO2C

MeO

OTBS

Cl

Cl

3) KMnO4

4) CH2N2

74% yield

OH

O O

HN

O

NH

O

NH

O

HN

O

Me

Me

NMeBoc

O

DdmHN

HN O

OMe

NH

OMe

TBSO

O

MeO

OTBS

Cl

Cl

HO

Page 35: Comparative syntheses of Vancomycin

Completion of the Natural Product

! Desilylation is followed by global deprotection

OH

O O

HN

O

NH

O

NH

O

HN

OMe

Me

NH

Me

O

H2N

HN O

OH

NH

OH

HO

O

HO2C

HO

OH

Cl

Cl

1) HF•pyr, pyridine

OMe

O O

HN

O

NH

O

NH

O

HN

O

Me

Me

NMeBoc

O

DdmHN

HN O

OMe

NH

OMe

TBSO

O

MeO2C

MeO

OTBS

Cl

Cl

2) AlBr3, EtSH

62% yield

OH

O O

HN

O

NH

O

NH

O

HN

O

Me

Me

NHMe

O

H2N

HN O

OH

NH

OH

HO

O

HO2C

HO

OH

Cl

Cl

Nicolaou, Takayanagi, Jain, Natarajan, Koumbis, Bando, Ramanjulu, ACIEE, 1998, 2717

Page 36: Comparative syntheses of Vancomycin

Conclusions

! While synthesis is not an issue in the supply of Vancomycin, fascinating chemistry has been discovered in pursuit of an expedient synthesis

! Control over the wide variety of stereocenters in the context of a complex synthesis is most notable

Oallyl

O

NH

OH

HN

NH

HO

F

NO2O

O

Oallyl

O O

NH

O

NH

O

HN

OH

Cl

Evans - 36 steps0.2% overall yield

84% average

NH

HO2C

HO

BnO

NH2

OMeOMe

MeO

OHN

NN

N

Br

O

NHBoc

O

Cl

N

O

HN

O

NH2

HN O

OMe

NH

OMe

HO

O

MeO

Cl

Br

BnO

N

N

Nicolaou - 36 steps 0.13% overall yield

82% average