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    Analytical techniques

    UNIT 1

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    Self Study

    Principle of the followinginstruments/techniques and identify specificanalytes that are measured by each

    instrument: Flourometry

    Turbidimetry

    Nephelometry Chemiluminescence

    Chromotography (HPLC; GLC & TLC)

    Elisa Prof T. Matsha 2

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    Lecture Outline

    Photometry & Spectrophotometry Mass spectrophotometry

    Electrochemistry (Nersnt equation) Electrophoresis

    Osmometry

    Enzyme kinetics

    Prof T. Matsha 3

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    Photometry &Spectrophotometry (1)

    Measurement of light intensity

    Light as other forms of electromagneticradiation make characteristic patterns

    (waves) as they travel through space Wavelength distance between two peaks

    (high points) as the light travels in a wavelike manner

    http://id.wikipedia.org/wiki/Berkas:Wavelength.pnghttp://id.wikipedia.org/wiki/Berkas:Wavelength.png
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    Photometry &

    Spectrophotometry (2)

    Each wave has a certain shape and

    length depending on the frequency ofthe waves. Frequency of a wave is inversely proportional

    to the wavelength

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    Prof T. Matsha 6

    Photometry &Spectrophotometry (3)

    Previously, photometric instruments measured lightintensity independently of wavelength

    Sunlight mixture of spectrum of radiant energy atdifferent wavelengths (rainbow) human eye recognizes itas white

    Modern Instruments can isolate a narrow wavelengthrange of the spectrum for measurements

    Filters filter photometers Prisms or gratings - spectrophotometers

    http://www.lpi.usra.edu/education/fieldtrips/2005/activities/ir_spectrum/images/emspectrum.jpg
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    Determinations in the ClinicalLaboratory are based on measurementof radiant energy

    Emitted Partially reflected Transmitted

    Absorbed Photometers light emitted Spectrophotometers - absorbed

    Photometry &Spectrophotometry (4)

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    SPECTROPHOTOMETER

    Used to measure to concentrationsof substances

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    SPECTROPHOTOMETER cont.

    A combination of a spectrometer & a photometerSpectrometer produces light of any selectedPhotometer measures light intensity

    A cuvette with liquid is placed between the 2.

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    SPECTROPHOTOMETER cont.

    The amount of light passing through the cuvetteis measured by the photometer.

    The photometer delivers a voltage signalto a display device.The signal changes as the amount of lightabsorbed by the liquid changes

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    SPECTROPHOTOMETER cont.

    Lightabsorbed

    Transmitted

    light

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    SPECTROPHOTOMETER cont.

    Light absorbed

    Units: Absorbance (A) or Optical density (OD)

    (logarithmic scale)

    Transmitted light - % transmission(Arithmetic scale)

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    SPECTROPHOTOMETER cont.

    Obeys Beers law:

    If a solute absorbs light of a particular ,

    the absorbance is directly proportional tothe concentration of substance in solution.

    I0A = log = clI

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    Prof T. Matsha 14

    Beers Law (1)

    Beers law The intensity of a solution when viewed through monochromatic light

    (single wavelength, e.g. 600nm) is directly proportional to theconcentration of the substance through which the light passes.

    Lamberts law

    - When monochromatic light passes through a transparent medium, therate decrease in intensity with the thickness of the medium isproportional to the intensity of light

    Beer-Lambert law (also known as Beers law)- When monochromatic light passes through a coloured solution the

    amount of light transmitted decreases exponentially with the increasein concentration of the solution through which the light passes orsimply; absorbance is directly related to concentration if the light pathstay constant

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    Beers Law (2)

    Absorbance Absorption is a process in which incident radiated

    energy is retained without reflection or transmissionon passing through a medium

    Therefore for ray to be absorbed it must have thesame frequency as a rotational or vibrationalfrequency in the atom or molecule it strikes

    Transmittance The ratio of transmitted energy to the amount ofincident energy is called transmittance.

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    USE OF ASPECTROPHOTOMETER

    Blank

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    Beers Law (3)

    Some of Io is either reflected by surface of the cell orabsorbed by solvent or cell wall , Io < Is

    Percent transmittance %T = Io / Is X 100 For some applications in optics it might be useful to see

    transmittance values as percent transmittance values. Allintensities will be scaled to fit an interval between 0 and 100percent transmittance.

    Focus interest eliminate factors use blank Blank absence of compound of interest but same solvent. No

    light absorbed %T = 100%

    Add compound of interest serially %T varies inversely andlogarithmically with concentration

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    Clinical Example

    1. Blank Reading reagent buffer without serum

    Read the blank Most light transmitted & small amount absored bycuvette, solvent or reflected from detector

    Set instrument abitrarily at 100%T (A = 0)2. Sample Reading Reagent buffer + serum Difference amount light passed blank vs. sample due

    to presence of compound measured % T Sample beam signal X 100

    Blank beam signal

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    USE OF ASPECTROPHOTOMETER

    1. Switch on2.Set wavelength3.Use after 30 min

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    USE OF ASPECTROPHOTOMETER

    4. Calibratea. Insert blank

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    SPECTROPHOTOMETER cont.

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    USE OF ASPECTROPHOTOMETER

    5. Set to 0

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    USE OF ASPECTROPHOTOMETER

    4. Insert sample &read

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    Beers Law (4)

    Absorbance is more convenient to usebecause it is directly proportional toconcentration.

    Amount of light absorbed particularwavelength depends:1. Molecules and ions present2. [ ]

    3. pH4. Temperature

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    Standard Curve

    Unknown [ ] isdetermined from acalibration curve orstandard curve

    Standards of knownconcentration

    Plot on graph linearcurve

    B2MG Concentration (g/ml)

    Absorbance(450nm)

    0 0.046

    0.625 0.385

    1.25 0.723

    2.5 1.241

    5 2.199

    10 3.094

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    SpectrophotometicInstruments

    Measure light transmitted by solution

    Mathematically converted absorbance

    Determine [ ] light absorbing substance

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    Spectrophotometer (2)

    Light Source Provides radiant energy

    Visible light (350 - 700nm) tungsten light bulb

    To increase lifetime iodine or bromide is added -tungsten-iodide lamp UV region (165 -360nm) low pressure mercury-vapor

    lamp, emits discontinuous spectrum Hydrogen & deuterium lamps low. Deuterium-

    discharge more stable than hydrogen Mercury & xenon high pressure

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    Monochromator - isolate radiant energy of desired wavelength butexcludes others

    Monochromator

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    Filters

    To obtain monochromatic light useTypes1. coloured-glass filter

    Transmistts energy over a wide range of wavelength Not precise Simple & inexpensive

    2. Interference filters Pass very narrow range wavelength Efficient

    http://images.google.co.za/imgres?imgurl=http://www.tufts.edu/as/tampl/projects/micro_rs/monochromator4.jpg&imgrefurl=http://www.tufts.edu/as/tampl/projects/micro_rs/setup.html&h=307&w=345&sz=19&hl=en&start=1&tbnid=8dA7BUCxxYBM5M:&tbnh=107&tbnw=120&prev=/images%3Fq%3Dmonochromator%26gbv%3D2%26svnum%3D10%26hl%3Den%26sa%3DGhttp://images.google.co.za/imgres?imgurl=http://www.tufts.edu/as/tampl/projects/micro_rs/monochromator4.jpg&imgrefurl=http://www.tufts.edu/as/tampl/projects/micro_rs/setup.html&h=307&w=345&sz=19&hl=en&start=1&tbnid=8dA7BUCxxYBM5M:&tbnh=107&tbnw=120&prev=/images%3Fq%3Dmonochromator%26gbv%3D2%26svnum%3D10%26hl%3Den%26sa%3DG
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    Prisms

    Type of monochromator Separates white light to continuous spectrum

    by refraction, i.e. shorter wavelengths arerefracted or bent.

    Consequently nonlinear spectrum with longerwavelengths closer together, but

    Suitable narrow-bandwith portion of the

    spectrum

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    Separation of light to differentwavelengths

    Most commonly used monochromators

    Consists of parallel grooves etchedpolished surface

    Diffraction gratings

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    Cuvettes

    Cuvette/Sample/Absorptioncell:

    Holds sample& provides

    con stant l ight path

    Round / square

    Light path must be kept

    constant

    Otherwise A no t C

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    Round

    Difficult constant light path Not uniform Etched for constant positionSquare/rectangular

    Plane-parallel optical surface, constant light path Less error Most common Plastic cells inexpensive, but designed for single use

    application

    Good clarity for both UV and visible light Problems etching by solvents, temp. deformations,

    cleaning Quartz cuvettesexpensive, UV range

    Cuvette types

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    QC: Cuvettes

    Scratched opt ical surface scatter light

    Do not touchon optical surface

    Wipeoptical surface tissue before use

    Insert correct orientation spectrophotometer

    Clean immediatelyafter use (DO NOT soak)

    (mild detergent & rinse deionised water)

    Drainupside down to dry

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    Convert transmitted radiant energy equivalent amount electrical energy

    Photodetector

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    Photodetector types

    Pho tocell / barr ier-layer cell

    => least expensive

    => film light-sensitive material (eg. selenium /

    iron / silver)=> require no external voltage

    => rely internal e- transfer produce current

    => wide bandpass instruments

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    Phototube

    => also photosensitive material=> e- generated from light energy=> outside voltage required

    h l i li b

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    photomultiplier tube

    => detects & amplifies radiant energy=> e- attracted series anodes / dynodes=> each (+) voltage=> generate 2ndary e-=> multiple cascade => amplification=> thus 200x more sensitive than phototube=> narrow bandpass instruments

    wavelength scanner instruments

    double-beam spectrophotometers

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    DOUBLE BEAM

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    DOUBLE-BEAMSPECTROPHOTOMETER

    Automatic correctionsample A &reference A

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    QA/QC Spec.

    Wavelength accuracy Stray light scratched and dust particles Linearity

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    Spec in Clin lab

    General chemistryanalytes, e.g. glucose

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    Mass spectrophotometer

    MS used to:

    Identify unknown compounds

    [ ] of known substances

    Molecular structure

    Chemical composition of both in-& organic materia In clinical chemistry:

    Drug metabolism

    Drug abuse (steroids use in sport)

    Damage to DNA

    Metabolic disorders in infants

    Research, e.g. search for unique proteins in specimen for use as

    diagnostic or therapeutic targets

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    Mass spec basic components

    Sample converted into

    ions or molecules by

    thermal or electrical

    energy

    The ions in a gaseousmedium are accelerated

    into the mass analyzer

    where they are separated

    into species, such thatdifferent species of ions

    strike the detector at

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    ATOMIC ABSORPTION

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    ATOMIC ABSORPTIONSPECTROPHOTOMETER

    Measure [ ]. by detecting A ofelectromagneticradiationby atoms

    (not molecules)

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    Components

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    Light Source

    Hallow-cathode lamp Consists of evacuated gas-tight chamber +

    anode

    Cathode Inert gas(argon / helium)=> voltage applied=> filler gas ionised

    => ions excite metal atoms=> light energyemitted

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    Sample Cell

    Flame

    Why? Sample must contain reducedmetal in atomic vaporised state

    Done via heat of flame break chemicalbonds unexcited atoms

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    AAS vs SPEC

    Light source passes through sample

    Note, atoms though bonds are broken ground state (unexcited)

    Light source excites atoms returns toground state emits energy = absorbedlight

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    Chopper

    Aim: measure light absorbed by atoms

    Need to distinguish between lightemitted by light source and excitedatoms

    Hence, the chopper

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    Monochromator

    Also used to protect the photodetectorfrom excessive light from flameemissions

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    Adv:Disadvantages

    ADV:=> very sensitive & precise

    DISADV: onlymeasure elementsthat exist atomic state

    eg. Mg2+, Mn2+, Cu2+, Pb2+ Flame not dissociate samples into free atoms,ie. PO4

    2- interfere Ca2+

    analysis (forms CaPO4complex)

    Overcome adding cations compete with Ca for P

    Ionisation atoms upon dissociation by flame,overcome reducing flame temp.

    Matrix interference,eg. atoms in organic solvents enhanced lightabsorption. Overcome pretreat sample (extraction)

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    Fluorometry

    Measure concentration of solution thatcontain fluorescing molecules

    Principle: is based on an energy exchange

    process that occurs when valence shellelectrons absorb EMR, become excited andreturn to an energy level lower than theiroriginal level. The lifetime of an excited state

    is about 10-9 to 10-6 seconds and the lightemitted fro a single excited state is calledfluorescence

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    Monochromator

    Primary filter selects the wavelength Secondary filter as in AAS protects the

    photodetector from radiant energy

    emitted by flourescing molecules insample Spectrofluorometer filters are

    replaced with prisms or gratings

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    Advantages

    Specificity- because selection optimalwavelength for both absorption &fluorescence

    Sensitivity- 1000x more sensitive thanspectrophotometry

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    Disadvantages

    Sensitiveto environmental changes pHchanges

    => affects availability e-

    Temperaturechanges=> affects probability loss energy viacollision (rather than fluorescence)

    Contaminating chemicals / change solvent=> change structure molecules

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    QC Fluorometry

    Any fluorescence as result ofenvironmental changes

    Quenching

    QC: extreme care mandatory=> analytical technique

    => instrument maintenance

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    Chemiluminescence

    Chemiluminescence differs from flourescence in thatemission of light is created from a chemical orelectrochemical reaction (rxn) and not from EMRstimulation of electrons.

    It involves the oxidation of an organic compound suchas luminol, in the presence of a catalyst such as anenzyme, metal ions (though not always)

    The excited products formed during the oxidation

    rxn produce chemiluminescence on return to thesinglet state that can be measured by a luminometer.

    ADVANTAGES

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    ADVANTAGESCHEMILUMINESCENCE

    Subpicomolar detection limits

    Speed rapid

    Ease of use, ie. one-step procedure

    Simple instrumentation

    Increased sensitivity over flourescence

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    TURBIDITY & NEPHELOMETRY

    Techniques used to measuring the [ ] of a solutionthat contains particles too large for absorptionspectoscopy.

    Nephelometry measurement of light scattered by a

    particulate solution. Commonly used for antibody-antigen rxns.TURBIDIMETRY measurement of the reduction inlight transmission caused by particle formation.

    Applications: microbiology bacterial growth in brothcultures; hematology clot formation in coagulationanalysers.

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    QC

    Reagents free particles

    Cuvettes no scratches Sample handlingcritical because particles

    tend aggregate & settle out solution

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    Electrochemistry

    Measurement of current of voltagegenerated by the activity of specificions

    Clinical chemistry: potentiometry;coulometry; voltammetry; andamperometry

    All use eithergalvanic electrochemicalcellOR electrolytic cell

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    GALVANIC & ELECTROLYTIC

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    GALVANIC & ELECTROLYTICCELLS

    Electrochemical cell consists of:

    Two half-cells and a salt bridge(textbook figure)

    Electrodes (cathode & anode) immersed2 beakers salt solution

    If only 1 beaker then solution = saltbridge

    ION-SELECTIVE

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    ION-SELECTIVEELECTRODES (ISE)

    Potentiometric method pH electrodes

    Sensitive to individuals ions measuredirect electrical potential due toactivity of free ions

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    pH Electrodes

    Components Indicator Electrode

    consists of a silver wirecoated with AgCl in

    0.1mmol/L HCl

    All above place in into atube containing specialglass membrane tip sensitive to H+ only.

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    pH METER

    Measures the acidity of a solution.

    pH = - log aH+

    pH = - log [H+]

    AH+ = hydrogen ion activity

    [H+] in moles / of solution

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    pH METER

    2 electrodes measure voltage

    1 electrode is in a liquid with fixed acidityreference electrode

    Other electrode responds to acidity of thesolution sensing electrode

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    pH METER

    A voltmeter measures the differencebetween the voltage of the electrodesA meter converts this into pH

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    Indicator Electrode

    pH electrode into test solution=> movement H+ near tip electrode=> produce potential difference

    => between internal & test solution=> measured as pH by voltmeter

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    Reference electrode

    Most commonly used - calomel electrode Calomel is a paste of mercurous chloride &

    potassium chloride

    In electrolyte solution KCl it is in directcontact with metallic mercury All reference electrodes must generate a

    stable electrical potential

    [ ] of electrolyte must constant &temperature stable voltage

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    NERNST EQUATION

    Electromotive force generated because H+ atglass tip=> described by Nernst equation (self study)

    THUS temperature H+ activity Set temperature-compensation knob

    pH COMBINATION

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    pH COMBINATIONELECTRODE

    Indicator + reference electrodecombine in one small probe

    Consists of: internal reference

    electrode=> Ag/AgCl OR=> Hg/Hg2Cl2

    Sealed into narrow glass cylinder withpH-sensitive glass tip

    E E

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    pH METER

    Combination probe contains both electrodes

    H l d

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    QC pH electrode

    Balance the system with the electrodesin a buffer whose pH is 7.0

    Replace buffer with one of different

    pH, usually 4.0 or 10DONT touch glass bulb with your fingers.Rinse with distilled water

    Keep within ambient temperature rangeAvoid air bubblesKeep clean of deposit

    GAS-SENSING

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    GAS SENSINGELECTRODES

    Similar pH electrodes but separated fromsolution bygas-permeable hydrophobicmembrane

    BUT designed detect specific gases insolutions

    eg. CO2 (PCO2 electrode)eg. O2 (Clark electrode)eg. NH

    3

    (NH3

    gas electrode)

    El h i

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    Electrophoresis

    Migration charged solutesin electricalfield

    In clin lab protein serum, urine,

    CSF Lately, Nucleic acids

    C

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    Components

    Electrical power => driving force Support medium

    Buffer

    Sample

    Detecting system

    SUPPORT MATERIAL

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    SUPPORT MATERIAL

    All gels transparent Scanned densitometer Dried permanent record

    Cellulose acetate Agarose gel Polyacrylamide gel Starch gel

    PRINCIPLE

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    PRINCIPLE

    Charged particles migrate to oppositecharged electrode

    Velocity of migrationcontrolled by=> particle net charge(directly )=> particle size & shape(inversely )=> strength electrical field=> chemical & physical properties supporting

    medium=> temperature

    P d

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    Procedure

    Support with gel placed inelectrophoresis chamber

    Chamber filled buffer- contact both

    ends support/gel Samplesapplied to gel Apply constant voltage / current

    specific time - Electrophoresis

    D t ti

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    Detection

    Support/gel in fixative / dried F: prevent diffusion sample

    Stainwith appropriate dye aidvisualisation & quantitation

    NOTE: dye uptake sample conc.

    Excess dye washed away Drygel (permanent record)

    QC l t h i

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    QC electrophoresis

    Operate either constant current / constantvoltage - constant currentpreferred

    Why? Current flows through medium heat is

    produced Results increased agitation of dissolved

    solutes increased current increased heat &buffer evaporation ionic strength of buffer

    increased current

    QC b ff

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    QCbuffer

    Affects charge ampholytes (e.g Protein)1 => pH &2 => ionic strength of buffer

    Ampholyte net charge either (+) / (-)

    if buffer more acidic than pI ampholyte=> ampholyte binds H+

    => ie. (+) charge=> migrate cathode (-)

    if buffer more basic than pI ampholyte

    => ampholyte loses H+=> ie. (-) charge=> migrate anode (+)

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    DETECTION &

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    DE E ION &QUANTITATION

    Separated protein fractions stained visualise- UV light (nucleic acids)

    Quantitation:densitometer

    => each band = peak=> surface area of peak = % of total

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    Ch m t h

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    Chromatography

    Refers to a group of techniques used toseparate complex mixtures on the basisof different physical interactions

    between the individual compound andstationary phase of the system

    C mp n nts

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    Components

    Mobile phase=> gas / liquidF: carry sample

    Stationary phase => solid/liquid

    F: mobile phase flows

    Column: F: hold stationary phase &separated components

    MODES OF SEPARATION

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    MODES OF SEPARATION

    Adsorption chromatography Partition chromatography

    Steric exclusion chromatography

    Ion-exchange chromatography

    Adsorption chromatography

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    Adsorption chromatography

    Liquid-solidchromatography Competition sample & mobile phasefor

    adsorptive sites solid stationary phase High affinity molecules retained longer Stationary phase:(a) acidic polar (eg. silicagel) (b) basic polar (eg. alumina)(c) nonpolar (eg. charcoal)

    Partition chromotography

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    Partition chromotography

    Liquid-liquidchromatography Separation solute basis relative solubility

    nonpolar (organic) solvent & polar (aqueous)solvent

    Molecules polar & nonpolar groups in aqueoussolution added to immiscible organic solvent

    Vigorous shaking -two phases separate

    Chloroform method DNA extraction

    Steric Exclusion

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    Steric Exclusion

    Liquid-solidchromatography Separate solute molecules basis of size& shape

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    Ion-exchange

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    Prof T. Matsha 95

    gchromatography

    Solute mixtures separated by charge Stationary phase is a resin consistingof large polymers with charged

    functional groups Cation exchange resin,anion exchangeresin or mixed bed exchange resin

    Resin is insoluble in water

    USES OF ION-EXCHANGE

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    Prof T. Matsha 96

    CHROMATOGRAPHY Removeinterfering substancesfrom

    solution

    Concentratedilute ion solutions

    Separatemixtures charged molecules(eg. amino acids)

    Chromotographic procedures

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    Prof T. Matsha 97

    Chromotographic procedures

    1. THIN-LAYER CHROMATOGRAPHY (TLC) Variant column chromatography Thin layer sorbenteg. alumina, silica gel, cellulose, cross-linked

    dextran=> uniformly coated glass / plastic plate

    Sample applied near bottom edge plate Mobile phase / solventin closed container until atmosphere

    saturated solvent vapour Bottom edge plate in solvent NOTE: samples NOT immersed solvent

    solvent migrates up thin layer=> capillary action=> sample molecules dissolved=> ie. carries sample molecules

    TLC

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    Prof T. Matsha 98

    TLC

    Separation depends sorbent & solvent(1) adsorption(2) partition(3) steric exclusion

    (4) ion-exchange Solvent close top => plate removed & dried Sample Rfcompared standards Rf- Rf=>

    retention factor Rf = distance sample component

    total distance solvent front Method semiquantitativescreening test

    HPLC

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    Prof T. Matsha 99

    HPLC

    Improved TLC Components: Pumpforces mobile phase

    through column much greater velocity thangravity-flow

    Column: stationary phase packed into longstainless steel column

    Fine & uniform packing=> high resolution separation=> requires pressure to force mobile phasethrough

    Components HPLC

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    Prof T. Matsha 100

    Components HPLC

    Sample injector- small syringe introduce sample intopath

    Mobile phase carries sample through column

    Detector- monitor eluateas leaves column produce

    electronic signal conc. each component Spectrophotometersmost common

    Recorder- record detector signal versus time mobilephase ie. from time sample injection

    Graph => chromatogram

    Chromatograph

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    Prof T. Matsha 101

    Chromatograph

    Identify compounds=> comparedretention timeto standard retentiontimes (BUT only identical conditions)

    Determine conc. each compound=> peak area conc. compound

    GAS CHROMATOGRAPHY

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    Prof T. Matsha 102

    GAS CHROMATOGRAPHY

    Separate mixtures volatilecompounds / made volatile Similar HPLC except mobile phase = gas Thus samples partitioned between

    gaseous mobile phase & liquid stationary phase

    Carrier gas=> nitrogen / helium / argon, selectiondepends on type of detector used Samplemust be injected asgas OR Temperatureof the injection port must be above

    boiling point of the components to vaporise sampleupon injection

    SCINTILLATION COUNTER

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    Prof T. Matsha 103

    SCINTILLATION COUNTER

    Radioimmunoassay used to measuretrace concentrations of hormones ordrugs

    Detect radioactive signals Development of non-isotopic

    immunoassay diminished use

    Osmometry

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    Prof T. Matsha 104

    Osmometry

    Measure conc. solute particles in solution Refers to measurement of osmolality of an aqueous

    solution such as serum, plasma or urine 4 physical properties solution change as number

    dissolved particles in solvent: collectively they arecalled colligative properties of the solution becausethey can be related to each other and to theosmolality(1) osmotic pressure; (2) vapour pressure; (3)

    boiling point; (4) freezing point Thus, osmometry is based on measuring changes inthe colligative properties and the freezing-pointdepression is the most commonly used in clin

    FREEZING-POINT

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    Prof T. Matsha 105

    OSMOMETER Consists of a sample refrigerated chamber containing a stirrer

    and a thermistor (temperature sensing device)

    Sample is supercooled below its freezing point in a chamberusually containing ethylene glycol

    The stirrer is used to agitate the sample in order to initiate

    freezing As the ice crystals form, heat is released from the solution,

    which at some point reaches an equilibrium with the rate of heatremoved by the colder temp. of the sample chamber

    The equilibrium temp is known as the freezing point and is

    detected by the thermistor osmolality of the sample and isexpressed as milliosmoles per kilogram of water (mOsm/kg)

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    Enzyme Action:

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    Induced Fit Model

    Enzyme structure flexible, not rigid

    Enzyme and active site adjust shape to bind

    substrate

    Increases range of substrate specificity

    Shape changes also improve catalysis duringreaction

    Enzyme Action:

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    Induced Fit Model

    E + S ES complexE + P

    SP

    P

    SS

    Learning Check E1

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    Learning Check E1

    A. The active site is(1) the enzyme(2) a section of the enzyme(3) the substrate

    B. In the induced fit model, the shape of

    the enzyme when substrate binds(1) Stays the same(2) adapts to the shape of thesubstrate

    Factors Affecting Enzyme

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    Action: Substrate

    Increasing substrate

    concentration increases the

    rate of reaction (enzyme

    concentration is constant)

    Maximum activity reachedwhen all of enzyme

    combines with substrate

    First order kinetics rxn

    rate a [substrate]

    Zero order kinetics

    rxndepends on [enzyme]

    Michael is-Menten constant (Km )

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    Michael is Menten constant (Km )

    1913 Michaelis & Mentenhypothesised role [S]

    S binds free E at low [S] (ie. more E than S)

    reaction rate steadily as more S added

    thus reaction rate [S]=> f i rst-order kinet ics

    eventually E saturated with S

    thus maximum reaction velocity

    as P formed free E immediately combines excess free S=> zero-order k inet ics

    thus reaction rate depends [E]

    Factors Affecting EnzymeT

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    Action: Temperature

    Little activity at low temperature Rate increases with temperature

    - Movement of molecules

    - Rate of intermolecular collusion- Energy for rxn

    Most active at optimum temperatures(usually 37C in humans)

    Activity lost with denaturation at hightemperatures

    Factors Affecting EnzymeA i T

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    Action: Temperature low temp. (eg. refrigeration / freezing)

    => enzymes reversible inactive (specimens for enzymeanalysis frozen or refrig.)=> some enzymes NOT frozen (activity lost)=> avoid repeated freeze-thaw (denature)

    control temp. lab=> accurate 0.1C

    labs choose enzyme analysis=> 25C=> 30C

    => 37C(most common)NOTE: reference ranges vary...

    Factors Affecting EnzymeA i

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    Action

    Optimum temperature

    ReactionRate

    Low High

    Temperature

    Factors Affecting Enzyme

    A i H

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    Action: pH

    Maximum activity at optimum pH

    R groups of amino acids have proper charge

    Tertiary structure of enzyme is correct

    Narrow range of activity

    Most lose activity in low or high pH

    Factors Affecting Enzyme Action

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    Factors Affecting Enzyme Action

    Reaction

    Rate

    Optimum pH

    3 5 7 9 11

    pH

    Enzyme Inhibition

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    Enzyme Inhibition

    Inhibitors

    cause a loss of catalytic activity

    Change the protein structure of an enzyme May be competitive or noncompetitive

    Some effects are irreversible

    Competitive Inhibition

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    Competitive Inhibition

    A competitive inhibitor Has a structure similar to substrate

    Occupies active site

    Competes with substrate for activesite

    Has effect reversed by increasing

    substrate concentration

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    Learning Check E2

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    Learning Check E2

    Identify each statement as describing an

    inhibitor that is

    (1) Competitive (2) Noncompetitive

    A. Increasing substrate reverses inhibition

    B. Binds to enzyme, not active site

    C. Structure is similar to substrate

    D. Inhibition is not reversed with substrate

    Solution E2

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    Solution E2

    Identify each statement as describing an

    inhibitor that is

    (1) Competitive (2) Noncompetitive

    A. 1 Increasing substrate reverses inhibition

    B. 2 Binds to enzyme, not active site

    C. 1 Structure is similar to substrate

    D 2 Inhibition is not reversed with substrate