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J. Cell Sci. 68, 271-284 (1984) 2 71Printed in Great Britain © The Company of Biologists Limited 1984
THE THREE-DIMENSIONAL STRUCTURE OF THE
CELL WALL GLYCOPROTEIN OF CHLOROGONIUM
ELONGATUM
P. J. SHAW AND G. J . HI LL S
John Innes Institute, Colney Lane, Norwich NR4 7U H, U.K.
SUMMARYThe green alga Chlorogonium elongatum, a member of the Volvocales, possesses a crystalline cell
wall composed of hydroxyproline-rich glycoprotein similar to the primary cell wall glycoproteins ofhigher plants . Electron microscopy and co mpu ter image processing have been used to determine thecrystal structure of the Chlorogonium cell wall in three d imensions to a resolution of 2-0 nm . Th estructure is composed of heterologous dimers. Each subunit of the dimer comprises a long, thinspacer domain and a large globular domain, which is the site of the intra- and inter-dimer inter-actions. Th ere are also sites of intersu bunit interactions at the opposite ends of the rod dom ains. Wesuggest that the rods are composed predominantly of glycosylated polyproline helix, as has beensuggested for higher plant cell wall glycoproteins and has been shown for the cell wall glycoproteinof Chlamydomonas reinhardtii, which is closely related to Chlorogonium.
INTRODUCTION
Glycoproteins have been identified as important constituents of the extra-cellularmatrix of organisms ranging from the Archaebacteria to higher plants and animals.
Within the great range of glycoproteins that have been characterized, a distinction
may be made between those glycoproteins that contain hydroxyproline and those that
do not. It has been suggested (Lamport, 1977) that the acquisition of the enzymic
apparatus necessary to use molecular oxygen to hydroxylate proline residues
represents a distinct evolutionary step, and that this is reflected in the function and
distribution of the resulting glycoproteins. In the plant kingdom hydroxyproline
(Hyp)-containing glycoproteins have been shown to be impo rtant constituents of the
primary cell wall of higher plants, in /3-lectins (Allen, Desai, Neuberger & Geeth,
1978), and as the factors mediating sexual agglutination in certain algae
{Chlamydomonas reinhardtii (Cooper et al. 1983) and Chlamydomonas eugametos(Pijst, Zilver, M usgrave & Van den End e, 1983 )).
Th e latter organisms are members of a fairly large group of motile eucaryotic algae,
the Volvocales, which possess cell walls" composed solely of glycoproteins. These
glycoproteins contain a high proportion of hydroxyproline and, at least in the case of
C. reinhardtii, there is good evidence that the major cell wall glycoprotein is organized
into Hyp-rich domains, showing a polyproline II helix structure, and domains con-
taining little or no hydroxyproline (Homer & Roberts, 1979). It has been suggested
that the polyproline II helix, glycosylated by short oligosaccharides, is a common
structural feature of Hyp-containing plant glycoproteins, and evidence for the
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272. P. J. Shaw and G. J. Hills
presence of this structure has also been presented for potato lectin (Allen et al. 1978)and the primary cell wall glycoprotein of higher plants (Lamport, 1977).
The cell wall glycoproteins of the Volvocalean algae are of particular interest to us
because, besides being Hyp-rich glycoproteins related to those found in higher plant
cell walls, they occur in vivo as crystalline lattices, which are thus amenable to detailed
structural study. Most of the glycoprotein of these cell walls forms the crystalline
outer layer and the remainder forms an amorphous and much more diffuse inner wall
layer. The inner layer is formed first during cell division and probably forms a tem-
plate on which the outer layer crystallizes (Roberts, 1974).
Many species within the Volvocales have now been examined by high-resolution
electron microscopy, and all possess one of only four types of crystal structures in their
cell walls (Roberts, Hills & Shaw, 1982). The use of the cell wall structure as aphylogenetic marker for the classification of the algae has been suggested (Roberts,
1974). We have previously determined the three-dimensional structure of a represen-
tative of one of these classes by electron microscopic analysis (Lobomonas piriformis;
Shaw & Hills, 1982) (class IV of Roberts et al. (1982)). We showed that the structure
is composed of two sets of dimers, each of which consists of two rod-shaped molecules
aligned in the plane of the crystal.
The subject of the present investigation, Chlorvgonium elongatum, displays by far
the most common cell wall structure found in the Volvocales - denoted as type II by
Roberts. A preliminary investigation of the wall has been reported by Roberts & Hills
(1976). As the structure was also apparently the simplest among the wall types, it was
suggested that it was closest to that of a hypothetical ancestral type, from which the
other wall types had diverged. Table 1 shows all the species currently categorized as
type II.
Table 1. Species of algae currently known to have type II cell walls
Species Collection no.
Brachiomonas submarina 7/I aCarteria crucifera 8/7aCarteria eugametos 8/3Carteria incisa 8/4Chlamydomonas applanata 11/2Chlamydomonas chlamydogama 11 /48aChlamydomonas dorsoventralis 11/4
Chlamydomonas dysosmos 11/31Chlamydomonas eugametos 1 l/ScChlamydomonas fimbriata 11 /6 9Chlamydomonas moetvusi 1 l/16fChlamydomonas pulsatilla 11 /4 4Chlamydomonas reginae 11 /78Chlamydomonas rosae 11 /6 6Chlamydomonas sphaerella 11 /2 7Chlorvgonium elongatum 12/1Chlorogonium euchlorum 12/3Haematococcus capensis 34/4bPolytoma uvella 62/2a
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Three-dimensional structure of Chlorogonium cell wall 273
MATERIALS AND METHODS
Cultures of Ch. elongatum (Dangeard) (Strain 12/1) were obtained from the Culture Centre ofAlgae and Protozoa, 36 Storey's Way, Cambridge, U.K. and were grown in sterile conditions inliquid culture without aeration, using a Tris-buffered mediu m, supplem ented with yeast peptone(Catt, Hills & Roberts, 1978) under continuo us illumination (80 ̂ Einstein mol~
2s in the wave-
band 400- 700 n m) . Cells were disrupted with glass ballotini in a Mickle shaker, layered onto a 5 %to 120 % (w /v) glucose gradient and centrifuged in a swinging-bucket rotor for 5 min at 1500 # .The fastest sedimenting band consisted of almost pure cell walls.
Negatively stained specim ens were made on 400 mesh copper grids coated with thin carbon filmsmade by evaporation onto a freshly cleaved mica surface and stripped off by flotation onto water.The negative stains used were 2-5% (w/v) aqueous methylamine tungstate (MET) (Faberg6 &Oliver, 1974) or methylamine tungstate/tannic acid made by the addition of 0-2mg/ml tannic acid(Mallinckrodt, St Louis, U.S.A.) to 2-5% (w/v) methylamine tungstate solution (METT). The
latter solution must be made by the addition of solid tannic acid to the MET solution to avoidprecipitation, and the best results were obtained using the resulting solution within one day.
Specime ns were examined on a JE O L JEM 1200 EX electron microscope fitted with a eucentricsingle-axis tilt specimen holder or a tilt/rotatio n specimen ho lder. Micrograp hs were generally recor-ded at 80 kV, X 30000, u sing K odak SO 163 film. Since only a small proportion of specimen areas givediffraction spo ts to high (2 nm ) reso lution , the following strategy was used for the collection of tilteddata. M icrographs were recorded from 10-20 areas of a suitable grid and the coordinates of each areawere noted from the microscope's digital display. Th e micrograp hs were developed and examined inan optical diffractometer. T he best areas, which were rare, contained spo tsout to theA = 3row . I twa sthen p ossible to retur n to these areas and collect tilt series, generally abou t a single axis from +6 0 ° an d—60°, but occasionally ab out two p erpendicular axes. Additional zero tilt images recorded after theseries showed that no significant degradation of the image occurred during this procedure.
Areas of the m icrographs were masked off for scanning u sing optical diffractometry. Areas wereused only if the defocus level was such th at the first zero of the contrast transfer function (Erick son,1973) occurred outside the highest-resolution spots. If possible, exactly the same area of each
member of a tilt series was used.Areas of the micrograph s were digitized using a microdensitometer cons tructed in this laboratory
(Shaw, Garn er & Parker, 1981) linked to a DE C P DP 11/6 0 m inicomp uter, w hich was used for allsubse quen t data proces sing. Th e scanning raster was set to 24 /im, which correspo nds to 0-8 nm atthe specimen, and either 512x512, or more usually 384x384 points were scanned. (The adequacyof the smaller scan size was checked by trimming down a 512x512 image and reprocessing thesmaller area. No significant difference was observed in the reconstructions.)
Processing of the images was carried out essentially as described previously (Shaw & Hills, 1982;Robe rts, Sh aw & Hills, 1 981; Shaw, 1981). The reciprocal lattice vectors were initially determinedby an interactive program, then refined by a search procedure that examines every significant spotin the transform and refines its position by a peak-profile analysis method. Amplitudes and phasesfor each spot in the transform were then determined by the profile analysis procedu re. Tw o furtherquantities were output for each spot: the ratio of peak to background amplitudes, and the ratio ofthe least-squares residual to average local background amplitude. This latter quantity is useful asa measure of how well the spots agree with the theoretical sine profile (Shaw, 1981). For some
images, amplitude and phase data around each spot were printed out and the spots were examinedmanually to check the validity of the automatic procedure.
Tilt angles and axes were determined by the calculation given by Shaw & Hills (1981). T herelative origins of the various data sets were determin ed using the phase search proced ure describedby Unw in & Hend erson (1975). Th e relative origins of four untilted images were determined to givea zero tilt starting set to which the tilted data sets were correlated in order of increasing tilt angle.Finally, each data set was refined in turn against all the others for three iterations of the entirelist, until no significant shifts in origins resulted. In refinement, only points on each z* linecloser than 0-025 nm"
1were used. A mplitudes were scaled using an unweighted least-squares scale
factor:
k = _ summ ed over all pointsLrt'
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274 P. J. Shaw and C. J. Hills
closer than 0-025 nm~'. Various weighting schemes were tried for this calculation, but in all casesa slight drift of scale factors duri ng iteration of the refinemen t w as found. A similar problem has beendiscussed by Fox & Holmes (1966).
Regularly spaced values along the 2* lines were interpolated by a least-squares fit using sinefunctions (C rowth er, de Rosier & Klug , 1970). Th is method w orked well for all the phase curves,but occasionally the procedure, an unconstrained least-squares fit, yielded what was judged to bean unreasonably close fit to the data points for some of the weaker amplitude lines resulting in anoscillating curve. These lines were smoothed manually. The interpolated data were used as inputto a three-dimensional Fourier transform progTam, and the reconstructed three-dimensional mapwas contoured with equally spaced levels in sections of constant z.
RESULTS
Large, dislocation-free areas of the cell wall of Ch. elongatum can easily be ob-tained. This is a consequence of the shape of the cells and the way in which the two-
dimensional lattice is fitted around the closed surface of the cell. The cell wall is an
elongated ellipsoid with pointed ends, where large numbers of lattice faults occur.
The central portion of the ellipsoid is an approximate cylinder, however, and a nearly
Table 2. Statistics relating to the two-dimensional structure determination
A. Pairwise phase comparison of individual zero-tilt data sets
2012G
2032G358G317G
2012G
35-6
29-927-4
31-9
In the lower left-hand triangle
2032G
14-5
23-0'25-426-4
one film of each DE
3S8G
9-9
10-734-3
26'1
lir has been rotated thro
317G
12-7
10-711-033-7
ueh 180°. 2012Gand2032G stained with M E T T ; 358G and 317G stained with M ET alone.Phase residuals/?^ in degrees defines as : R$ = 1/2/V [£(4>u* —<p2**)]*, where <J>IA* are the phases forthe first im age; 4>2A* are th e phas es for the seco nd image with the origin shifted to give the best phasecorrelation, sum med over all spots whose peak-to-background ratio is greater than 2 0 .
• The factor of i is to give values comparable to those obtained with multiple film scaling in twoand three dimensions, where the discrepancy calculated is of individual films from an average orinterpolated value.
B. Overall statistics for two-dimensional scaling4 data sets included2-dimensional data included for 43 spots
fl<f>#= 14-3°
The summations are over all common points.
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Three-dimensional structure of Chlorogonium cell wall 275
perfect crystal lattice can be laid down in this region. The purification procedure
produces mainly entire or nearly entire envelopes, and back-to-back double layers arethus usually observed in the electron microscope. However, with careful searching
areas of single layers can be found. Unfortunately these often show poor crystal orde r,
which we believe is due to inadequate preservation by the negative stain. With simple
methylamine tungstate as a stain we have only ever obtained three or four areas with
diffraction spots extending to 2-0nm (this included one tilt series). T he ad dition of
Fig. 1. Electron micrograph of portions of the cell wall of Chlorogonium stained withM ET T. Bar, 100 nm.
Fig. 2. Optical diffraction pattern of negatively stained Chlorogonium cell wall showingspots in addition to the basic lattice spots.
Fig . 3. Optical diffraction p atter n of an area of the Chlorogonium wall that does not display
any extra spots.
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Three-dimensional structure of Chlorogonium cell wall 277
500
180-
-180-
*
/+
+ /
i j, .hi r4*^
1 1 1 1
(-5,0)
— 1 1——1 1 —-0 -4 - 0 -2 n m - i 0-2 0-4
3000-
-0 -4 -0 -2 0-4
0-4 -0 -2 - i 0-2 -0 -4
-0 -4
Fig. 5. Selection of lattice lines obtained during the three-dimensional reconstruction.
the wall structure (see below), but since their total intensity is small we ignored them
in our initial structura l analysis. Althoug h the indexing system we have used is not the
most obvious one, it is the only one that gives integral h indices for these extra spots.
The unit cell dimensions for this lattice are:
a = 28-6nm = 7-2nm y= 128-5°.
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278 P. J. Shaw and G. J. Hills
Table 3. Statistics relating to the three-dimensional structure determination
4 untilted images were included37 tilted images were included30 2* line were finally included (only those lines with more tha n 20 data poin ts)
summed over all N data points.
- 0 -5
-0 -6
Fig. 6. Reciprocal space resolution plot of the 2* lines used in the three-dimensionalreconstruction.
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Three-dimensional structure of Chlorogonium cell wall 279
Table 2 shows statistics on the agreement of four individual two-dimensional images.
A two-dimensional reconstruction produced by averaging data from the four imagesis shown in Fig. 4. The basic structure is of rows of subunits packed closely together
along the b axis, but rather widely separated by less-dense fibrillar interconnections
in the other dimension. Although the structu re appears to have approximate twofold
symm etry, there are very distinct and quite consistent departures from this sym metry,
Table 2 shows this in a quantitative fashion, by pairwise comparison of images with
and without relative twofold rotations. The structure must therefore be assigned to
the two-sided plane group PI (Holser, 1958).
Some statistics of the three-dimensional structure determination are shown in
Fig. 7. Stereo pair of the stack of contoured sections of the three-dimensional re construc-tion. A an d B, large and small subunits.
Fig. 8. Wooden model of the three-dimensional reconstruction showing the envelope
included within the lowest positive contour in Fig. 7.
Fig. 9. Th e wooden model taken apart to show the subun it struc ture.
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280 P. J. Shaw and G. J. Hills
to
so
u
$
z(nm)
Fig. 10. Graph of the maximum contrast (i.e. the difference between the maximum andminimum density) plotted against z.
Table 3, a selection of z* lines in Fig. 5, and a projection plot showing the distribution of
data measured in reciprocal space in Fig. 6. Th e lack of symm etry in most of the #* lines,
particularly in am plitude, confirms that the symm etry group is only P I . A stereo-pair
picture of the stacked contour plot is shown in Fig. 7, and a wooden model of the en-
velope enclosed by the lowest positive contour in Figs 8 and 9. Th e crystalline layer has
a total thickn ess of 6—7 nm; Fig. 10 shows a graph of image contrast as a function of z.
Delineation of the su bunits from which the structure is composed is quite straight-
forward and there is little or no ambiguity. There are two types of subunit, which,
however, are very similar. The subunits comprise two domains: a large globular
domain of approximate dimensions 4nmX6nmX6nm and a very thin long, rod-like
domain about 7—8nm in length, which bends and thickens at the end. The chief
difference between the two types of subunit lies in the size of the large globular
domains; the A subunits in Fig. 7 containing significantly more stain-excluding
material. The subunits are associated as heterologous dimers with the dimer interfacebeing formed by the large domains, and the dimers in turn packing to form lines of
the large doma ins. T he rod-like arms project ou t of this line on either side in the plane
of the crystal and interlock at their ends with those from the neighbouring rows in a
second, m uch less dense line of stru ctu re. T he effect is to give on one side of the crystal
rows of raised units that project about 3-0—4-0 nm from the surrounding structure,
and on the other side a rather flat network. The two types of pore through the
structure, although crystallographically different, are nevertheless almost identical in
size and shape, being approximately circular and 4-0—5-0 nm in diameter. The struc-
ture is illustrated diagrammatically in Fig. 11.
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Three-dimensional structure of Chlorogonium cell wall 281
Fig. 11. Diagrammatic representation of the subunit structure of the Chlorogonium cellwall.
For the three-dimensional analysis we ignored the extra spots that are frequently
observed. They are very variable in intensity and often entirely absent from the
transform, and at their strongest are of rather small intensity compared to the simple
lattice spots. With the definition of b* we have used, these spots may be indexed by
simple fractional k indices. We have observed image transforms with extra spots
corresponding to k = 2n/5, k — 2w/6 and k = 2n/7, as well as transforms where the
spots are 'smeared' in the direction parallel to b*. The results from analysis of an
image with particularly strong and coherent super-lattice spots are shown in Figs
12—14. The two-dimensional reconstruction using only the basic lattice spots is
shown in Fig. 12. A reconstruction including the extra spots is shown in Fig. 13. The
changes resulting from the extra spots are quite small, and are centred mainly around
the subsidiary lines of stru cture, where the subunit 'tails' interdigitate. Fig . 14 shows
reconstruction using data only from the extra peaks, i.e. it represents the difference
between Figs 12 and 13. This shows very clearly rows of associated positive and
negative peaks. We interpret this as being due to a periodic displacement of the ends
of the tails, which repeat in this case every three, unit cells (or every six tails). We
presume that the spots that we have observed on other images at k = 2n/5, k = 2n/l
arise from a similar replacement repeating every five and every seven tails, respect-
ively. Two explanations of this phenomenon have occurred to us. The first is that
this is a genuine super-lattice structure arising from longer-range interactions than
nearest neighbour, and is displayed by the wall structure in vivo in the cell. Thesecond is that it is produced by flattening an originally curved surface onto the
specimen grid. This would introduce strains into the sheet, which for certain
geometries might be relieved by periodic distortions along what is likely to be the
weakest part of the structure. We favour the first explanation, chiefly because there
does not appear to be any correlation between the presence of the super-lattice and
position on the wall; an area near the 'equator' where curvature is minimal is just
as likely to display the super-lattice as an area near the end where curvature is
greater.
CEL68
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282 P.J. Shaw and G.J. Hills
Figs 12—14. Two-dimensional reconstructions of an area of the Chlorogomum cell wallshowing strong super-lattice spots.
Fig. 12. Without the additional spots.
Fig. 13. With the additional spots.
Fig. 14. With only the additional spots included. The contour level is approximatelyhalf of that in Figs 12 and 13.
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Three-dimensional structure of Chlorogonium cell wall 283
DISCUSSION
It is a somewhat unexpected feature of our structural results that the dimer should
be heterologous. However, this finding is consistent with results obtained by SDS
(sodium dodecyl sulphate)/polyacrylamide gel electrophoresis of the cell wall
glycoprotein (R oberts, 1974). For Chlorogonium two bands were obtained, both w ith
approximate relative molecular mass of 150-200( X103). Th is figure is consistent with
the volume enclosed by the lowest positive contour in our reconstruction. Further
support for this correlation of the SD S/polyacrylam ide gel patterns with the structu re
comes from another species showing the same class of cell wall structure,
Chlamydomonas dysosmos. This wall gives only one band on SDS/polyacrylamide
gel electrophoresis, with a mobility close to that of the larger of the two Chlorogonium
bands (Roberts, 1974). Our preliminary analysis of micrographs of this cell wall has
shown that although the overall structure is very similar to that of Chlorogonium, th e
C. dysosmos structur e shows good twofold symm etry. We therefore surmise that this
structure is composed of symmetric dimers. We suggest that a species such as C.
dysosmos appears to have a single cell wall glycoprotein subunit that is closest to a
hypothetical ancestral type. One might then propose a simple evolutionary step from
a glycoprotein subu nit that dimerizes (i.e. self—self recognition) to two closely similar
glycoproteins, which recognize each other and thus form heterologous dimers.
The rod-like arms of the subunits are comparable in width to the resolution of the
reconstru ction (2 nm) an d would be entirely consistent with the model for Hyp-rich
glycoproteins proposed by Lamport (1980). In this model regions very high in
hydroxyproline residues form a polyproline II helix, and the oligosaccharidesattached to the hydroxyl groups of the proline residues pack around the backbone
helix to give stable and strong rods, which would have a diameter of approximately
2 nm. There is strong evidence for the presence of a large domain of this structure in
the cell wall glycoprotein of the closely related species C. reinhardtii, both from
circular dichroism measurements of the intact glycoprotein and large proteolytic
fragments (Homer & Roberts, 1979), and from chemical studies of amino acid com-
position and pa ttern s of glycosylation (R ober ts, 1979). T he m odel we suggest for each
of the subunits of the Chlorogonium cell wall glycoprotein, therefore, is of a long rod
composed of a glycosylated polyhydroxyproline helix, which acts as a structural
spacer, together with a large globular domain, which forms strong dimer associations
and inter-dimer contacts. There is then a region at the opposite end of the rods thatforms a second pair of intersubunit associations. The Chlorogonium wall glycoprotein
appears to display in a particularly simple manner structural features that may well
be shared by other hydroxyproline-containing plant glycoproteins; namely, long rod-
like spaced dom ains together w ith globular domains that form interaction and associa-
tion sites. We might expect a similar general structure for such glycoproteins as the
flagellar sexual agglutination factors in Chlamydomonas (Cooper et al. 1983; Pijst et
al. 1983), and the class of plant cell wall glycoproteins tha t has been term ed extensin
(Lamport, 1977). There is already some evidence for this type of architecture in
potato lectin (Allen et al. 1978).
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284 P. J. Shaw and G. J. Hills
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{Received 16 January 1984-Accepted 2 February 1984)