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Synthesis of 4-Hydroxycoumarin Heteroarylhybrids asPotential Antimicrobial Agents
Zeba N. Siddiqui1, Mohammed Musthafa T. N.1, Anis Ahmad2, and Asad U. Khan2
1 Department of Chemistry, Aligarh Muslim University, Aligarh, India2 Interdisciplinary Biotechnology Unit, Aligarh Muslim University, Aligarh, India
A new series of 4-hydroxycoumarin derivatives 3a–d was synthesized by the reaction of 3-bromo-4-
hydroxy coumarin 1 with various heteroaldehydes 2a–d in good yields. The synthesized compounds
were characterized on the basis of their elemental and spectral (IR, 1H-NMR and mass spectrometry)
analysis. All target compounds were evaluated for their in-vitro antimicrobial activity against
Streptococcus pyogenes, methicillin-resistant Staphylococcus aureus, Pseudomonas aeruginosa, Klebsiella
pneumonia, and Escherichia coli bacterial strains and fungal cultures of Candida albicans, Aspergillus
fumigatus, Trichophyton mentagrophytes, and Penicillium marneffei by disk diffusion assay with slight
modifications. The minimum inhibitory concentration (MIC) was determined for the test
compounds as well as for reference standards. Among the tested compounds, 3a has shown the
most potent antibacterial as well as antifungal activities.
Keywords: Antibacterial activity / Antifungal activity / 3-Bromo-4-hydroxycoumarin / Dicoumarols / Heteroaldehydes
Received: July 26, 2010; Revised: September 4, 2010; Accepted: September 14, 2010
DOI 10.1002/ardp.201000218
Introduction
In recent years, the number of life-threatening infectious dis-
eases caused by multi-drug resistant Gram-positive and Gram-
negative pathogen bacteria have reached an alarming level in
many countries around the world [1, 2]. These enteric bacterial
infections are responsible for morbidity and mortality world-
wide, mostly in developing countries and areas such as the
Indian sub-continent, part of South America, and tropical part
of Africa, etc. [3, 4]. A number of clinical reports in the United
States and worldwide have independently described the
emergence of vancomycin resistance in methicillin-resistant
Staphylococcus aureus (MRSA) isolates and other human
pathogen Gram-negative isolates [5]. Escherichia coli are respon-
sible for the world’s most common and serious infectious
diseases like invasive dysentery and diarrhea [6, 7]. The infec-
tion with these microorganisms may have significant impact
on huge demolition of host tissue and severe diseases [8, 9].
More than 90% of the cases of vaginitis are of candidiasis,
trichomoniasis, and bacterial vaginosis [10]. Thus, the
infections caused by these microorganisms pose a serious
challenge to themedical community and need for an effective
therapy has led to a search for novel antimicrobial agents. For
this reason, the present stratagem for the synthesis of new
compounds is aimed in the direction of developing new
coumarin derivatives to inhibit the growth of Gram-positive,
Gram-negative bacteria, and fungi.
The synthesis of coumarin derivatives has attracted con-
siderable attention of organic andmedicinal chemists as these
compounds are widely used as fragrances, pharmaceuticals,
and agrochemicals [11]. Much research has been focused on
the inhibition of bacterial and fungal growth by naturally
occurring, synthetic coumarin derivatives [12–18]. 3-Acyl- and
3-carbamoyl-4-hydroxycomarins, dicoumarols, and some
other coumarin derivatives like novobiocin and its analogues
have proven as potent antibiotics [19–22]. Furthermore, three
coumarin antibiotics, novobiocin, chlorobiocin, and coumer-
mycin A1 exhibit significant activity on certain tumor cells
[23]. The other biological applications such as anti-inflamma-
tory [24], anticonvulsant [25], antiviral [26], antioxidant [27],
anti-HIV [28], anticarcinogenic [29], and antihistamine [30],
etc., are also cited in the literature. Besides the wide spectrum
biological applications of coumarin and its derivatives, the
chemical literature also embodies their some applications
from the material viewpoint such as cosmetics [11], optical
brightening agents [31], and laser dyes [32].
Correspondence: Zeba N. Siddiqui, Department of Chemistry, AligarhMuslim University, Aligarh-202002, India.E-mail: [email protected]
394 Arch. Pharm. Chem. Life Sci. 2011, 11, 394–401
� 2011 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim
In search of more potent antibiotics, herein we report the
one pot, efficient and simple methodology for the synthesis
of coumarin derivatives in good yields by the reaction of
3-bromo-4-hydroxycoumarin with various heteroaldehydes.
The synthesized compounds were screened for their in-vitro
antibacterial and antifungal activities.
Results and discussion
Chemistry
4-Hydroxycoumarin possesses a nucleophilic character due
to the presence of the carbon–carbon double bond at position
3 and reacts with aldehydes and ketones to give dicoumarol
derivatives [21, 33]. It was therefore expected, that 3-bromo-4-
hydroxycoumarin would also react with aldehydes to give
dicoumarol derivatives. The reaction afforded 3a–c in quan-
titative yields (76–81%) by refluxing 1 and the heteroalde-
hydes 2a–c in the presence of a catalytic amount of pyridine
in methanol (Scheme 1). However, the reaction of 1 with
5-chloro-3-methyl-1-phenylpyrazole-4-carboxaldehyde 2d did
not stop at the dicoumarol product 3e stage rather sub-
sequent cyclization took place to give pyrazolopyrone 3d
in good yield (80%) (Table 1). A probable route for the for-
mation of 3d has been shown in Scheme 2. The structural
assignment of the compounds isolated was done by elemen-
tal and spectral (IR, 1H-NMR, mass) analysis.
The high molecular weight of compound 3b in the electron
spray mass spectrum (Mþ ¼ 494.16) indicated the incorpora-
tion of more than one coumarin moiety in the product. The
infra red (IR) spectrum exhibited a strong absorption band at
1572 cm�1 for the carbon–carbon double bond of the cou-
marin unit whereas carbonyl groups of the chromone and
coumarin moieties appeared at 1636 and 1710 cm�1, respect-
ively. Another absorption band at 3437 cm�1 was assigned to
the OH group of the coumarin unit. The proton nuclear mag-
netic resonance (1H-NMR) spectrum showed a sharp singlet at
Scheme 1. Synthetic route of compounds 3a–d.
Arch. Pharm. Chem. Life Sci. 2011, 11, 394–401 Coumarins as potent antimicrobial agents 395
� 2011 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim www.archpharm.com
d 2.42 for the methyl protons of the chromone moiety. The
upfield singlet of themethine proton appeared at d 6.25. The 11
aromatic protons (three protons of the chromonemoiety and 8
protons of the coumarin units) were discernible in the form of
a multiplet at d 7.33–8.01. The diagnostic singlet of the C-2
proton of the chromone moiety was present as a sharp singlet
at d 7.66. A broad singlet (D2O exchangeable) at d 11.20 inte-
grating for more than one proton was assigned to the OH
protons of the coumarin units. Further confirmation for the
structure 3b was provided by the mass spectrum which has
Table 1. Synthesis of compounds 3a–d.
Entry Products Molecular structure Time (h) Yielda (%) M.p. (8C)
1 3a
O O
OH
O
OH
O
OO
3 76 >300
2 3b
O O
OH
O
OH
O
OO
CH33.5 78 >300
3 3cb
O O
OH
O
OH
O
NH
2.5 81 242–245
4 3d
NN
H3C
C6H5
O
O
O
O
OHO
3 80 270–272
a All yields refer to isolated products.b The product was confirmed by elemental analysis, spectral data and compared with [42]
396 Z. N. Siddiqui et al. Arch. Pharm. Chem. Life Sci. 2011, 11, 394–401
� 2011 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim www.archpharm.com
given subsequent fragmentation pattern. The spectral studies
of the other compounds followed a similar pattern.
Biological studies
Antibacterial and antifungal activities of the synthesized
compounds were completed by the disk diffusion method
and measured by the Halo Zone Test. The MIC of the synthe-
sized compounds against bacterial and fungal strains was
performed by the macro dilution test and results were
observed visually and spectrophotometrically.
Antibacterial Activity
The newly prepared compounds were screened for their
antibacterial activity against Escherichia coli (ATCC-25922),
methicillin-resistant Staphylococcus aureus (MRSA þVe),
Pseudomonas aeruginosa (ATCC-27853), Streptococcus pyogenes,
and Klebsiella pneumoniae (clinical isolate) bacterial strains
by the disk diffusion method [34, 35]. The results are pre-
sented in Tables 2 and 3.
The investigation of the antibacterial screening data
revealed that all the tested compounds 3a–d showed moder-
ate to good bacterial inhibition. All the compounds showed
good inhibition against S. pyogenes, methicillin-resistant
Staphylococcus aureus (MRSA þVe), P. aeruginosa, K. pneumonia,
and E. coli species. Among the tested compounds, 3a showed a
more potent bactericidal activity against all fungal strains
(MIC 12.5–25 mg/mL). The higher susceptibility of Gram-
positive bacteria is due to absence of a unique outer mem-
brane of peptidoglycon, hence the wall of these bacteria is
permeable to these derivatives. The compounds also have
significant influence on antibacterial profile of Gram-nega-
tive bacteria. The MIC of the compounds was found to be of
12.5–50 mg/mL. The MBC of the compounds was two, three or
four folds higher than the corresponding MIC results.
Antifungal activity
Antifungal activity was screened out by disk diffusion
method. For assaying antifungal activity Candida albicans,
Aspergillus fumigatus, Penicillium marneffei, and Trichophyton men-
tagrophytes were recultured in DMSO by the agar diffusion
method [36, 37]. The inhibitory results are presented in
Tables 4 and 5.
The antifungal screening data showed good to moderate
activity. All compounds showed good fungicidal activity
Scheme 2. Mechanism for the formation of product 3d.
Table 2. Antibacterial activity of compounds 3a–d.
Compounds Diameter of zone of inhibition (mm)
Gram-positive bacteria Gram-negative bacteria
S. pyogenes MRSAa P. aeruginosa K. pneumoniae E. coli
3a 21.3 � 0.3 18.9 � 0.5 26.1 � 0.2 17.3 � 0.2 22.1 � 0.33b 21.1 � 0.5 20.1 � 0.3 26.3 � 0.5 18.2 � 0.4 21.1 � 0.43c 19.3 � 0.3 18.4 � 0.2 23.2 � 0.4 16.3 � 0.2 20.2 � 0.23d 19.3 � 0.3 18.4 � 0.2 23.2 � 0.4 16.3 � 0.2 20.2 � 0.2Standard 24.0 � 0.3 25.0 � 0.4 32.0 � 0.3 18.0 � 0.2 26.0 � 0.4DMSO – – – – –
Positive control (standard); ciprofloxacin and negative control (DMSO) measured by the Halo Zone Test (mm).a Methicillin-resistant Staphylococcus aureus (MRSA þ Ve).
Arch. Pharm. Chem. Life Sci. 2011, 11, 394–401 Coumarins as potent antimicrobial agents 397
� 2011 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim www.archpharm.com
against C. albicans, A. fumigatus, T. mentagrophytes, and
P. marneffei fungal strains. Among the tested compounds 3a
showed a more potent fungicidal activity against all fungal
strains (MIC 25 mg/mL). The MIC of other compounds was
found to be of 25–100 mg/mL. TheMFC of the compounds was
found to be two, three or four folds higher than the corre-
sponding MIC results.
Conclusion
In summary, we have developed a clean and convenient
method to synthesize new coumarin derivatives in good
yields. The method is advantageous in terms of reduced
reaction time, high yield of products, simple experimental
work-up procedure, etc., thus, adding a useful procedure to
Table 3. MIC and MBC results of 3a–d. Positive control ciprofloxacin.
Compounds Gram-positive bacteria Gram-negative bacteria
S. pyogenes MRSA P. aeruginosa K. pneumoniae E. coli
MIC MBC MIC MBC MIC MBC MIC MBC MIC MBC
3a 25 50 25 50 25 50 12.5 50 25 503b 25 100 25 100 50 100 25 100 25 503c 50 100 50 >100 50 100 50 >100 50 >1003d 50 100 50 >100 25 100 50 >100 50 >100Standard 12.5 50 12.5 50 12.5 25 12.5 50 12.5 50
MIC (mg/mL) ¼ minimum inhibitory concentration, that is, the lowest concentration of the compound to inhibit the growth ofbacteria completely; MBC (mg/mL) ¼ minimum bactericidal concentration, that is, the lowest concentration of the compound forkilling the bacteria completely.
Table 4. Antifungal activity of 3a–d: Positive control (griseofulvin) and negative control (DMSO) measured by the Halo Zone Test (mm).
Compounds Diameter of zone of inhibition (mm)
CA AF TM PM
3a 19.4 � 0.3 16.5 � 0.2 15.1 � 0.3 13.7 � 0.33b 23.4 � 0.4 19.2 � 0.6 15.2 � 0.4 13.2 � 0.63c 17.9 � 0.5 15.4 � 0.4 15.1 � 0.2 12.9 � 0.53d 18.3 � 0.5 15.8 � 0.4 15.3 � 0.2 13.1 � 0.5Standard 30.0 � 0.2 27.0 � 0.2 24.0 � 0.3 20.0 � 0.5DMSO – – – –
CA; Candida albicans, AF; Aspergillus fumigatus, TM; Trichophyton mentagrophytes, PM; Penicillium marneffei.
Table 5. MIC and MFC of compounds 3a–d. Positive control griseofulvin.
Compounds CA AF TM PM
MFC MIC MFC MIC MFC MIC MFC
3a 25 100 25 50 25 50 25 1003b 25 50 25 100 50 100 50 >1003c 50 100 50 >100 100 100 50 1003d 50 100 50 >100 50 100 50 100Standard 6.25 12.5 12.5 25 6.25 25 12.5 25
CA; Candida albicans, AF; Aspergillus fumigatus, TM; Trichophyton mentagrophytes, PM; Penicillium marneffei. MIC (mg/mL) ¼ minimuminhibitory concentration, that is, the lowest concentration of the compound to inhibit the growth of fungus completely;MFC (mg/mL) ¼ minimum fungicidal concentration, that is, the lowest concentration of the compound for killing the funguscompletely.
398 Z. N. Siddiqui et al. Arch. Pharm. Chem. Life Sci. 2011, 11, 394–401
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existing methodologies. Further, in-vitro antibacterial and
antifungal evaluation of compounds has proved them as
potent antibacterial and antifungal agents. The importance
of such kind of work lies in the possibility that the new
compounds might be more effective against microbes for
which a thorough study regarding the structure-activity
relationship, toxicity and their biological effects would be
helpful in designing more potent antimicrobial agents.
Experimental
ChemistryMelting points of all synthesized compounds were taken on aRiechert Thermover instrument and are uncorrected. The IRspectra (KBr) were recorded on a Perkin Elmer RXI spectrometer.1H-NMR spectra were recorded on Bruker DRX-300 and BrukerAvance II-400 spectrometer using tetramethyl silane (TMS) as aninternal standard and DMSO-d6 as solvent. Mass spectra wererecorded on Micro mass Quattro II triple quadrupol mass spec-trometer and Jeol-SX-102 (FAB) spectrometer. Elemental analyses(C, H, and N) were conducted using a Carlo Erba analyzer model1108. 3-Bromo-4-hydroxycoumarin [38], 3-formylchromone, 6-methyl-3-formylchromone [39], indole-3-carboxaldehyde [40],and 5-chloro-3-methyl-1-phenylpyrazole-4-carboxaldehyde [41]were prepared by reported procedures. Other chemicals werepurchased from Merck (Mumbai, India) and Sigma-Aldrich(Switzerland) and used without further purification. The purityof all compounds was checked by TLC on glass plates (20 � 5 cm)coated with silica gel (E-Merck G254, 0.5 mm thickness). Theplates were run in chloroform/methanol (3:1) mixture and werevisualized by iodine vapors.
General procedure for the preparation of coumarin
derivatives (3a–d)To a solution of 3-bromo-4-hydroxycoumarin 1 (4.14 mmol) inmethanol (12 mL), containing 0.4 mL pyridine, the heteroalde-hyde 2a–d (2.07 mmol) was added. The reaction mixture wasrefluxed in a heating mantle for 2.5–3.5 h. After completion ofthe reaction (checked by TLC), the reactionmixture was cooled atroom temperature. The solid part separated out was collected byfiltration, dried and recrystallized either from chloroform orfrom benzene to afford 3a–d in pure form.
1-(4-Oxo-4H-1-benzopyran-3-yl)-1,1-bis(4-hydroxy-1-
benzopyran-2-one-3-yl)methane 3aPurified by recrystallization from chloroform. White powder.Yield 76%. M.p.: >3008C; FTIR (KBr) n: 3428 (OH, coumarin),1708 (C––O, coumarin), 1633 (C––O, chromone), 1570 (C––C,coumarin) cm�1; 1H-NMR (300 MHz, DMSO-d6,) d: 6.02 (s, 1H,CH), 7.18–7.79 (m, 11H, Ar-H), 7.88 (d, 1H, C-5, J ¼ 7.8 Hz, chro-mone), 7.98 (s, 1H, C-2, chromone), 11.31 (s, 2H, OH) ppm; ESI-MSm/z: 480.13 (Mþ), 453.12, 451.11, 320.08, 319.08, 317.06, 99.11.Anal. calcd. for C28H16O8: C, 70.01; H, 3.35. Found: C, 70.18; H, 3.42.
1-(6-Methyl-4-oxo-4H-1-benzopyran-3-yl)-1,1-bis(4-
hydroxy-1-benzopyran-2-one-3-yl)methane 3bPurified by recrystallization from chloroform. White powder.Yield 78%. M.p.: >3008C; FTIR (KBr) n: 3437 (OH, coumarin),
1710 (C––O, coumarin), 1636 (C––O, chromone), 1572 (C––C, cou-marin) cm�1; 1H-NMR (400 MHz, DMSO-d6) d: 2.42 (s, 3H, CH3),6.25 (s, 1H, CH), 7.33–8.01 (m, 11H, Ar-H), 7.66 (s, 1H, C-2, chro-mone), 11.20 (s, 2H, OH) ppm; ESI-MS m/z: 494.16 (Mþ), 493.16,318.07, 317.06, 277.15, 99.11. Anal. calcd. for C29H18O8: C, 70.44;H, 3.66. Found: C, 70.56; H, 3.69.
1-(Indol-3-yl)-1,1-bis(4-hydroxy-1-benzopyran-2-one-3-yl)
methane 3cPurified by recrystallization from chloroform. Orange crystallinesolid. Yield 81%. M.p.: 242–2458C; FTIR (KBr) n: 3398 (OH, cou-marin), 3065 (NH, indole), 1719 (C––O, coumarin), 1572 (C––C,coumarin), 1290 (C–N, indole) cm�1; 1H-NMR (400 MHz, DMSO-d6) d: 5.04 (s, 1H, CH), 6.46 (s, 1H, –C––C–H, indole), 6.81–7.97 (m,11H, Ar-H), 10.43 (s, 1H, NH), 11.63 (s, 2H, OH) ppm; ESI-MS m/z:451.3 (Mþ), 446.3, 413.5, 377.4, 375.4, 360.6, 358.6, 332.6, 274.6,238.5, 225.5, 134.5, 116.5. Anal. calcd. For C27H17NO6: C,71.83; H,3.79; N, 3.10. Found: C, 71.91; H, 3. 64, N, 3.06.
4-(4-Hydroxy-2-oxo-2H-1-benzopyran-2-one-3-yl)-3-
methyl-1-phenyl pyrazolo[3,4;2,3]-4H-pyrano[3,2-b]-1-
benzopyran-5-one 3dPurified by recrystallization from benzene. White crystals. Yield80%. M.p.: 270–2728C; FTIR (KBr) n: 3480 (OH, coumarin), 1719(C––O, coumarin), 1633 (C––N, pyrazole), 1608 (C––C, coumarin),1368 (C-N, pyrazole) cm�1; 1H-NMR (300 MHz, DMSO-d6) d: 2.50 (s,3H, CH3), 4.67 (s, 1H, CH), 7.09–8.40 (m, 13H, Ar-H), 11.38 (s, 1H,OH) ppm; FAB-MSm/z (%): 490 (Mþ) (25), 329 (50), 331 (60), 346 (5),302 (15), 318 (25), 317 (100), 269 (90), 267 (85), 185 (5), 150 (20),149 (70), 142 (5), 115 (50). Anal. calcd. for C29H18N2O6: C, 71.02; H,3.69; N, 5.71. Found: C, 71.09; H, 3.81; N, 5.63.
Antibacterial evaluationA standard inoculum (1–2 � 107 cfu/mL 0.5 McFarland stand-ards) was introduced to the surface of sterile agar plates and asterile glass spreader was used for even distribution of the inoc-ulum. The disks measuring 6 mm in diameter were preparedfrom Whatman no. 1 filter paper and sterilized by dry heatat 1408C for 1 h. The sterile disks previously soaked in aknown concentration of the test compounds were placed innutrient agar medium. Solvent and growth controls were kept.Ciprofloxacin (30 mg) was used as positive control while the diskpoured in DMSO was used as negative control. The plates wereinverted and incubated for 24 h at 378C. The susceptibility wasassessed on the basis of diameter of zone of inhibition againstGram-positive and Gram-negative strains of bacteria. Inhibitionzones were measured and compared with the controls. Thebacterial zones of inhibition values are given in Table 2.
Minimum inhibitory concentrations (MICs) were determinedby broth dilution technique. The nutrient broth, whichcontained logarithmic serially two fold diluted amount of testcompound and controls were inoculated with approximately5 � 105 cfu/mL of actively dividing bacteria cells. The cultureswere incubated for 24 h at 378C and the growth was monitoredvisually and spectrophotometrically. The lowest concentration(highest dilution) required to arrest the growth of bacteria wasregarded as the minimum inhibitory concentration (MIC). Toobtain the minimum bactericidal concentration (MBC), 0.1 mLvolume was taken from each tube and spread on agar plates. Thenumber of cfu was counted after 18–24 h of incubation at 358C.
Arch. Pharm. Chem. Life Sci. 2011, 11, 394–401 Coumarins as potent antimicrobial agents 399
� 2011 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim www.archpharm.com
MBC was defined as the lowest drug concentration at which99.9% of the inoculum were killed. The minimum inhibitoryconcentration and minimum bactericidal concentration aregiven in Table 3.
Antifungal evaluationSabourauds agar media were prepared by dissolving peptone(1 g), D-glucose (4 g) and agar (2 g) in distilled water (100 mL)and adjusted to the pH of 5.7. Normal saline was used to make asuspension of spore of fungal strain for lawn. A loop full ofparticular fungal strain was transferred to 3 mL saline to geta suspension of corresponding species. 20 mL of agarmedia werepoured into each Petri dish. The excess of suspension wasdecanted and the plates were dried by placing in an incubatorat 378C for 1 h. Using an agar punch wells were made and eachwell was labeled. A control was also prepared in triplicate andmaintained at 378C for 3–4 days. The fungal activity of eachcompoundwas comparedwith griseofulvin as the standard drug.Inhibition zones were measured and compared with the con-trols. The fungal zones of inhibition values are given in Table 4.The nutrient broth containing a logarithmic serially two-folddiluted amount of the test compound and controls was inocu-lated with approximately 1.6 � 104–6 � 104 cfu/mL. The cul-tures were incubated for 48 h at 358C and the growth wasmonitored. The lowest concentration (highest dilution) requiredto arrest the growth of fungus was regarded as the minimuminhibitory concentration (MIC). To obtain the minimum fungi-cidal concentration (MFC), 0.1 mL volume was taken from eachtube and spread on agar plates. The number of cfu was countedafter 48 h of incubation at 358C. MFC was defined as the lowestdrug concentration at which 99.9% of the inoculums werekilled. The minimum inhibitory concentration and minimumfungicidal concentration are given in Table 5.
Financial assistance in the form of major research project [F.No. 37-15/2009(SR)] from UGC, New Delhi, is gratefully acknowledged. The authors wouldalso like to thank SAIF, CDRI, Lucknow and SAIF, Panjab University,Chandigarh for spectral data.
The authors have declared no conflict of interest
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