SPM 12

Pre-processing

Analysis

Pre-processing:

- Realignment- Coregistration- Slice timing- Normalization-SmoothSegmentation

Analysis

SPM +

Segmentation

Tissue 1 –GM

Tissue 2 –WM

Tissue 3–CSF

Tissue 4 –Bone

Tissue 5 –Soft

ROI analysis – Marsbar 2.0

xjView , MRIcron

Scripts using SPM batch