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Spectrométrie de masse:
tour d’horizon de la technique et applications
Pr. Jean-Louis Habib Jiwan
UCL - Chemistry Department
Layout
Mass spectrometry
Elemental composition
Radiosterilization of solid metoclopramide
Phytosterols
Glucosamine
Carnitines
Proteomics
Pr. Jean-Louis Habib Jiwan UCL - Chemistry Department May 23d 2006
Mass spectrometry
Fundamentals
ionization processesinternal energytime scale of events
isotopic distributionisotopic mass
Technical realizations
sample introduction
Ionization methods
vacuum systems
type of mass analyzerscombination of mass analyzersmodes of operation
coupling of separation device
Applications
identificationquantification
Mass spectral interpretation
fragmentation pathwayscharacteristic ionsrules
MS
Pr. Jean-Louis Habib Jiwan UCL - Chemistry Department May 23d 2006
Mass spectrometry
1897Thomson discovers e-
1912First mass spectrometerThomson
1942First commercialMass spectrometer
1953Quad an Trap descriptionPaul & Steinwedel
1956First GC/MS
1958First commercial TOF
1968First commercial Quad
1974 First LC/MSand FTICR description
1982First complete MS spectrum of Insulinand first commercial triple Quad
1987MALDIKaras & Hillenkamp
1988ESI by FennFirst spectra of protein> 20000 Da
2000Spectrum of noncovalentlyassociated macromolecules> 106 Da
2005OrbitrapMakarov
Pr. Jean-Louis Habib Jiwan UCL - Chemistry Department May 23d 2006
1918
EIMS of 2-methyl-3-pentanone (MW = 100)
O
O
CH2CH3
O
m/z
Rel
ativ
e in
tens
ityMass spectrometry
Pr. Jean-Louis Habib Jiwan UCL - Chemistry Department May 23d 2006
Elément isotope % Masse isotopiqu
e
isotope % Masse isotopique
isotope % Masse isotopique
Masse moyenne
C 12C 100 12.0000 13C 1.1 13.0033 12.011
H 1H 100 1.0078 2H 0.015 2.0140 1.0079
N 14N 100 14.0031 15N 0.37 15.0001 14.0067
O 16O 100 15.9949 17O 0.04 16.9991 18O 0.20 17.9992 15.9994
S 32S 100 31.9721 33S 0.789 32.9715 34S 4.44 33.9679 32.066
Cl 35Cl 100 34.9688 37Cl 31.98 36.9659 35.453
Br 79Br 100 78.9183 81Br 97.28 80.9163 79.904
Mass spectrometry
Pr. Jean-Louis Habib Jiwan UCL - Chemistry Department May 23d 2006
http://physics.nist.gov/PhysRefData/Compositions/index.html
http://www.webelements.com/
For high molecular weights, the difference between thevarious masses becomes important :
Insulin : C257H383N65O77S6
Chemical mass 5807.6559Nominal monoisotopic mass : 5801Exact monoisotopic mass : 5803.6375
The instrument response will depend on its resolution
Mass spectrometry
Pr. Jean-Louis Habib Jiwan UCL - Chemistry Department May 23d 2006
HPLCGC
SampleIntroduction
Ion Source
Analyser(s)
Detector
Vacuum
Mass spectrometry
Pr. Jean-Louis Habib Jiwan UCL - Chemistry Department May 23d 2006
Magnetic and electric sectorsQuadrupolesTime of Flight (Linear, Reflectron)Ion Trap ( 3D, Linear, Orbitrap)Fourier Transform Ion Cyclotron ResonanceHybrid instruments
Mass spectrometry
Analyzers
Pr. Jean-Louis Habib Jiwan UCL - Chemistry Department May 23d 2006
Electron IonisationChemical ionisationFast Atom BombardmentLaser Desorption IonisationMatrix-Assisted Laser Desorption IonisationAP-MALDIElectrosprayAtmospheric Pressure Chemical IonisationAtmospheric Pressure Photoionisation
Mass spectrometry
Ion sources
Pr. Jean-Louis Habib Jiwan UCL - Chemistry Department May 23d 2006
sourcemass
analyzerdetector
ionsresolved
ionssample
Mass spectrum
intensity
m/z
Mass spectrometry
Pr. Jean-Louis Habib Jiwan UCL - Chemistry Department May 23d 2006
CollisionInduced
Dissociation
detector
sourceFull spectrum
MS2 spectrum
Mass spectrometry : tandem mass spec or MS2
Pr. Jean-Louis Habib Jiwan UCL - Chemistry Department May 23d 2006
Elemental composition
Pr. Jean-Louis Habib Jiwan UCL - Chemistry Department May 23d 2006
N O
O
(CH2)3O
Cl C13H14NO3ClMasse : 267.0662
M+1 : 268.0740M+3 : 270.0640
Peak matching results :
268.0735 12C13H1535ClNO3
270.0705 12C13H1537ClNO3
Elemental composition
Pr. Jean-Louis Habib Jiwan UCL - Chemistry Department May 23d 2006
Measured : 150.0701 ± 0.010
C : 0 – 30H : 0 – 60N : 0 – 10O : 0 - 15
14 compositions
Measured : 150.0701 ± 0.050 60 compositions
Elemental composition
Pr. Jean-Louis Habib Jiwan UCL - Chemistry Department May 23d 2006
31 compositionsMeasured : 322.0151 ± 0.010
C : 0 – 30H : 0 – 60N : 0 – 10O : 0 - 15
Measured : 322.0151 ± 0.010 152 compositions
C : 0 – 30H : 0 – 60N : 0 – 10O : 0 – 15S : 0 - 10
Radiosterilization of solid-state metoclopramide
Pr. Jean-Louis Habib Jiwan UCL - Chemistry Department May 23d 2006
25kGy E Beam irradiated vs unirradiated
0
0.0005
0.001
0.0015
0.002
0.0025
0.003
0.0035
0.004
0.0045
0.005
3.5 4.5 5.5 6.5 7.5 8.5 9.5 10.5
Retention time (min.)
Ab
sorb
ance
at
273n
m
25kGy Gamma irradiated vs unirradiated
0
0.0005
0.001
0.0015
0.002
0.0025
0.003
0.0035
0.004
0.0045
0.005
3.5 4.5 5.5 6.5 7.5 8.5 9.5 10.5
Retention time (min.)A
bso
rban
ce a
t 27
3 n
m
Radiosterilization of solid-state metoclopramide
Pr. Jean-Louis Habib Jiwan UCL - Chemistry Department May 23d 2006
50kGy_001M06 #774-814 RT: 11.82-12.32 AV: 41 NL: 3.72E8T: + c APCI Full ms [ 100.00-900.00]
120 140 160 180 200 220 240 260 280 300 320 340 360 380 400
m/z
0
5
10
15
20
25
30
35
40
45
50
55
60
65
70
75
80
85
90
95
100
Re
lativ
e A
bu
nd
an
ce
300.1
227.1
184.1201.0 272.1213.1 254.2 314.0141.0 362.4168.1 400.6286.1154.0 380.1238.2 327.9126.0 343.5
Cl
NH2
OMe
NH
N
O
50kGy_001M05 #308-314 RT: 4.82-4.92 AV: 7 SB: 15 4.63-4.73, 5.06-5.17 NL: 3.13E6T: + c APCI Full ms [ 100.00-900.00]
100 120 140 160 180 200 220 240 260 280 300 320
m/z
0
5
10
15
20
25
30
35
40
45
50
55
60
65
70
75
80
85
90
95
100
Rel
ativ
e A
bund
ance
266.0
267.1
193.1205.8150.1
244.0 278.9114.6 167.0 230.2 298.8282.1248.1112.2 194.2 206.3192.1 227.0124.0 171.1 309.8145.3 160.2140.3 319.5
Radiosterilization of solid-state metoclopramide
Pr. Jean-Louis Habib Jiwan UCL - Chemistry Department May 23d 2006
Peak 2
NH2
NH
N
O
O
Radiosterilization of solid-state metoclopramide
Pr. Jean-Louis Habib Jiwan UCL - Chemistry Department May 23d 2006
Peak 350kGy_001M06 #657-671 RT: 10.07-10.29 AV: 15 SB: 42 9.40-9.71, 10.63-10.94 NL: 2.26E6T: + c APCI Full ms [ 100.00-900.00]
100 120 140 160 180 200 220 240 260 280 300
m/z
0
5
10
15
20
25
30
35
40
45
50
55
60
65
70
75
80
85
90
95
100
Re
lativ
e A
bu
nd
an
ce
272.0
274.0
275.0227.1184.0
NH2
NH
NH
O
Cl
O
Radiosterilization of solid-state metoclopramide
Pr. Jean-Louis Habib Jiwan UCL - Chemistry Department May 23d 2006
Peak 4 50kGy_001M06 #740-742 RT: 11,36-11,39 AV: 3 SB: 9 11,19-11,32 NL: 4,78E5T: + c APCI Full ms [ 100,00-900,00]
100 120 140 160 180 200 220 240 260 280 300 320
m/z
0
5
10
15
20
25
30
35
40
45
50
55
60
65
70
75
80
85
90
95
Rel
ativ
e Ab
unda
nce
286,0
288,0
205,4
163,0 201,0 220,3 282,3227,0206,9143,6 293,1104,8 260,7180,9113,2 136,0 183,9 326,8310,0274,0255,2173,0156,2 329,8234,9315,6
NH2
NH
N
O
Cl
O
Phytosterols in Spelt
Spelt is said to have better nutritive value than winter wheat.
Functional properties have traditionally been attributed to spelt.
Lack of scientific evidence for these claims.
What about the phytosterol contents ?
HO
Me H
Me
Me
HH-sitosterol
Pr. Jean-Louis Habib Jiwan UCL - Chemistry Department May 23d 2006
Fine bran ground to 1 mm sieve
Saponification in KOHaq (500g/l) / EtOH (1/3), overnight, RT, dark
Extraction with diethyl ether
Washing with water
Filtration (MN 616 wa filter)
Evaporation to dryness and redissolution in EtOH
SPE (C18, CHCL3/MeOH; 95/5)
Evaporation to dryness and redissolution in absolute EtOH
Filtration on DynaGardTM filters
Phytosterols in Spelt
Pr. Jean-Louis Habib Jiwan UCL - Chemistry Department May 23d 2006
29.12
Steryl Glycosides 20.67
31.92
67.63
81.08
Acylated SterylGlycosides
Free Sterols
Steryl Fatty Acid Esters
20.14
39.71
47.76
Rel
ativ
e A
bund
ance
100
00 10 20 30 40 50 60 70 80
LC/APCI-MS TIC trace of 19 standard compounds
SG
FS
ASG
SE
Phytosterols in Spelt
Pr. Jean-Louis Habib Jiwan UCL - Chemistry Department May 23d 2006
O
OH
CH OH2
O
H H
CH3
CH3
CH3
H CH3CH3
CH3
OH
HO
397
594
m/z
0300 400 500 600200
100
100
Rel
ativ
e A
bund
ance
a
b
m/z200 400300
397
411413
100
0100
OH
H H
CH3
CH3
CH3
H CH3CH3
CH3
Rel
ativ
e A
bund
ance
m/z200 300 400 500 600 700 800
0
100 397
832
c
CO
O
OH
CH2
O
H H
CH3
CH3
CH3
H CH3CH3
CH3
OH
HO
O
(CH )2 14CH3
d
m/z200 300 400 500 600 7000
100
Rel
ativ
e A
bund
ance
369
668651CO
O
H H
CH3
CH3
CH3
H CH3CH3
CH3
(CH )2 7
CH
CH CH 3(CH )2 7
SG
FS
ASG
ES
[M+H-H2O]+
Phytosterols in Spelt
Pr. Jean-Louis Habib Jiwan UCL - Chemistry Department May 23d 2006
LC/APCI-MS TIC trace
SG
FS
Phytosterols in Spelt
Pr. Jean-Louis Habib Jiwan UCL - Chemistry Department May 23d 2006
Sat. Sterols Unsat. Sterols
sitostanol 0.25 (0.02) stigmasterol 0.89 (0.02)
campestanol 0.27 (0.01) cholesterol 1.18 (0.03)
cholestanol 0.31 (0.06) -sitosterol 1.41 (0.09)
campesterol 1.42 (0.05)
Phytosterols in Spelt
Pr. Jean-Louis Habib Jiwan UCL - Chemistry Department May 23d 2006
sterol LOD (ng/µL) LOQ (ng/µL)
cholesterol 0.04 0.08
stigmasterol 0.06 0.11
campesterol 0.04 0.07
-sitosterol 0.04 0.07
cholestanol 0.16 0.32
campestanol 0.19 0.37
sitostanol 0.20 0.40
Phytosterols in Spelt
Pr. Jean-Louis Habib Jiwan UCL - Chemistry Department May 23d 2006
CombinedSteryl GlycosideandAcylated Steryl Glygoside(µg/g)
Phytosterols in Spelt
Pr. Jean-Louis Habib Jiwan UCL - Chemistry Department May 23d 2006
Combined FS and ES (µg/g)
Phytosterols in Spelt
Pr. Jean-Louis Habib Jiwan UCL - Chemistry Department May 23d 2006
Glucosamine
• Stimulates the synthesis of proteoglycans, which, in combination with collagen, form the connective tissue destroyed in osteoarthritis.
• Anti-inflammatory action
~ 21 millions adults in the USA live with osteoarthritis25% of visits to primary care physiciansand half of all non-steroidal anti-inflammatory prescriptions*
* Y. Shao et al J. Pharma. Biomed. Anal. 35 (2004) 625
Dietary supplements as alternative treatment
huge business
Pr. Jean-Louis Habib Jiwan UCL - Chemistry Department May 23d 2006
Pr. Jean-Louis Habib Jiwan UCL - Chemistry Department May 23d 2006
Glucosamine
Pr. Jean-Louis Habib Jiwan UCL - Chemistry Department May 23d 2006
Glucosamine
Pr. Jean-Louis Habib Jiwan UCL - Chemistry Department May 23d 2006
Glucosamine
D-Glucosamine chlorhydrate (C6H11O5NH2) . HClMW 215.6 83.1% of free base
D-Glucosamine sulfate (C6H11O5NH2)2 . H2SO4 . 2KClMW 605.5 59.2% of free base
Difficulties : ► no chromophore
► highly polar
► positively charged at pH 7
HPLC Methods
O
CH2OH
H
NH2
HOH
H
HO
H OH
H
Pr. Jean-Louis Habib Jiwan UCL - Chemistry Department May 23d 2006
Glucosamine
Eau-Aceto-2 #8-10 RT: 0.12-0.16 AV: 3 NL: 1.20E8T: + c Q1MS [ 50.00-300.00]
60 80 100 120 140 160 180 200 220 240 260 280 300m/z
0
5
10
15
20
25
30
35
40
45
50
55
60
65
70
75
80
85
90
95
100
Re
lativ
e A
bu
nd
an
ce
220.97
179.98
202.98162.00
83.13242.96 278.97
143.96 189.9472.15 233.8084.13 126.01 171.04 267.00212.92 286.9298.15 117.03 258.93 295.9660.20
H2O : CH3CN / 50:50
M+1+CH3CN
M+1
M+Na+CH3CN- H2O
- H2O
Pr. Jean-Louis Habib Jiwan UCL - Chemistry Department May 23d 2006
Glucosamine
Eau-Metha #1-12 RT: 0.01-0.20 AV: 12 NL: 2.30E8T: + c Q1MS [ 50.00-250.00]
60 80 100 120 140 160 180 200 220 240m/z
0
5
10
15
20
25
30
35
40
45
50
55
60
65
70
75
80
85
90
95
100
Re
lativ
e A
bu
nd
an
ce
179.91
161.92
201.88162.92
72.07 143.93 181.91163.9284.04 202.89 217.83 226.9095.99 193.92157.90125.94 242.0460.12 113.97
H2O : MeOH / 50:50
M+1
O
NH3
Pr. Jean-Louis Habib Jiwan UCL - Chemistry Department May 23d 2006
Glucosamine
NEUTRAL LOSS SCANNING METHOD
TRIPLE QUAD INSTRUMENTS
Precursorm scan
Fragmentation Fragment detectionm-a scan
MS1 MS2CID
Pr. Jean-Louis Habib Jiwan UCL - Chemistry Department May 23d 2006
Glucosamine
Test02 #133-143 RT: 2.25-2.42 AV: 11 NL: 4.34E7T: + c SIM cnl [email protected][ 179.50-180.50]
179.6 179.8 180.0 180.2 180.4m/z
0
5
10
15
20
25
30
35
40
45
50
55
60
65
70
75
80
85
90
95
100
Rel
ativ
e A
bund
ance
179.89
180.23
180
84
Pr. Jean-Louis Habib Jiwan UCL - Chemistry Department May 23d 2006
Glucosamine
RT: 0.00 - 14.99 SM: 5B
0 2 4 6 8 10 12 14Time (min)
10000
20000
30000
40000
50000
60000
70000
80000
90000
100000
Inte
nsi
ty
2.25
1.91
0.141.66 3.46 3.94 14.804.801.05 5.59 7.05 8.02 14.248.73 9.97 11.45
NL:1.04E5TIC F: MS ArthroMarine03
C18, H2O:MeOH / 50:50200 µl/min10 µl
GLAY = 56026+1570.92*X R^2 = 1.0000 W: Equal
0 10000 20000
ng/m l
0
10000000
20000000
30000000
40000000
Are
a
Y = 56026 + 1571*x R2 = 1.0000
25 – 25000 ng/mlLOQ ~0.5 ng on column
Pr. Jean-Louis Habib Jiwan UCL - Chemistry Department May 23d 2006
Glucosamine
10mg of powderdissolution in 10 ml MeOH:H2O / 50:50dilution 100 x in PBS
Results and Reproducibility :
1 capsule , 5 injections : 224 ± 5% mg/g
capsule 1 : 233 mg/gcapsule 2 : 231 mg/gcapsule 3 : 233 mg/g
Commercial capsule
Commercial solution 10mg of liquidedilution in 10 ml MeOH:H2O / 50:50dilution 10 x in PBS
5 analysis : 0.52 mg/g ± 10%
Detection of carnitines in urine
Pr. Jean-Louis Habib Jiwan UCL - Chemistry Department May 23d 2006
N COOH
O
CO
R
N COOH
COOH
O
CO
R
- (CH3)3N- R-COOH
m/z = 144
M - 59
COOH
m/z = 85
- N(CH3)3 - R-COOH
CO
R M - 161
Detection of carnitines in urine
Pr. Jean-Louis Habib Jiwan UCL - Chemistry Department May 23d 2006
Detection of carnitines in urine
FABMS spectrumof crude sample
Pr. Jean-Louis Habib Jiwan UCL - Chemistry Department May 23d 2006
Detection of carnitines in urine
FABMS2 spectrumof crude sampledetection of theprecursors of 85
Selective detection at 85
Scanning
Pr. Jean-Louis Habib Jiwan UCL - Chemistry Department May 23d 2006
Detection of carnitines in urine : discovery of a new carnitine
FABMS2 spectrumof a crude sampledetection of theprecursors of 85
?
Pr. Jean-Louis Habib Jiwan UCL - Chemistry Department May 23d 2006
Daughter spectrumof 290 m/z
CHCH2HOOC
CH2(CH3)3NO C
O
CH2 CH2 C
O
O CH2 CH3
ethylsuccinylcarnitine
MSRMNSynthesis
Detection of carnitines in urine : discovery of a new carnitine
Pr. Jean-Louis Habib Jiwan UCL - Chemistry Department May 23d 2006
Ethylsuccinylc.
2,6-dimethyl-Heptanoylc.
Detection of carnitines in urine : discovery of a new carnitine
Pr. Jean-Louis Habib Jiwan UCL - Chemistry Department May 23d 2006
Short introduction to proteomics
Protein chemistry Proteomics
Individual protein Complete mixtures
Complete sequence analysis Partial sequence analysis
Emphasis structure and function
Emphasis on identification by database matching
Structural biology Systems biology
Pr. Jean-Louis Habib Jiwan UCL - Chemistry Department May 23d 2006
Short introduction to proteomics
Proteinmixture
digestion
Peptidemixture
separation
separation
Proteins
Peptides MS analysis
MS data
Identification
database search
digestion
Separation: always 2D
2D gel or LC - LC
Pr. Jean-Louis Habib Jiwan UCL - Chemistry Department May 23d 2006
Short introduction to proteomics
pump
SCXcolumn
RPcolumn
MSsystem
sample
injector
Pr. Jean-Louis Habib Jiwan UCL - Chemistry Department May 23d 2006
Short introduction to proteomics : mass fingerprinting
Digestion Tryptic peptides
1529.5006
1529.6997
1529.7348
1529.9978
1530.2332
1530.4567
1531.0003
Peptide mass list
…
…
1529.7348measured mass
Pr. Jean-Louis Habib Jiwan UCL - Chemistry Department May 23d 2006
Search m/z Mass Tolerance (Da) # Hits
1529 1 478
1529.7 0.1 164
1529.73 0.01 25
1529.734 0.001 4
1529.7348 0.0001 2
IGGHGAEYGAEALER Mouse Hb alpha 1529.7348 (-0.0048)VGAHAGEYGAEALER Human Hb alpha 1529.7348 (-0.0048)
Short introduction to proteomics : mass fingerprinting
Pr. Jean-Louis Habib Jiwan UCL - Chemistry Department May 23d 2006
Search m/z Mass Tolerance (Da) # Hits
1529.73 0.1 204
1529.73
1252.70 0.1 7
1529.73
1252.70
1833.88 0.1 1
Short introduction to proteomics : mass fingerprinting
Pr. Jean-Louis Habib Jiwan UCL - Chemistry Department May 23d 2006
Short introduction to proteomics : peptide sequencing by MSn
A V A G C A G A R
72 171 242 299 402 473 530 601 769
cummulative mass
N
O
HR1
R2
b
y
Pr. Jean-Louis Habib Jiwan UCL - Chemistry Department May 23d 2006
Short introduction to proteomics : peptide sequencing by MSn
Pr. Jean-Louis Habib Jiwan UCL - Chemistry Department May 23d 2006
Short introduction to proteomics : peptide sequencing by MSn
Pr. Jean-Louis Habib Jiwan UCL - Chemistry Department May 23d 2006
Short introduction to proteomics : peptide sequencing by MSn
Pr. Jean-Louis Habib Jiwan UCL - Chemistry Department May 23d 2006
Future ?
Pr. Jean-Louis Habib Jiwan UCL - Chemistry Department May 23d 2006
High throughput analysis
Non-covalent association
S. Sanglier et al , JASMAS , 14 (2003) 418
UCL, SC, Mass Spec. Lab.Pr. Em. Ed de Hoffmann, A. Spôte, R. Rozenberg, R. Libert, G. Petitjean
UCL, MD, FARMPMNT Pr. N. DelzenneCHAM Pr. B. Tilquin, A. Maquille, Pr. J. Quetin-Leclercq,
UCL, AGRO, BNUTPr. M. Meurens, Dr. N. Ruibal
Moulin de HollangeDr. D. Delacroix
UCL, Saint-LucPr. Fr. Van Hoof, Pr. Ph. De Nayer
€€€ : Région wallonne, UCL FSR and COSIF
Pr. Jean-Louis Habib Jiwan UCL - Chemistry Department May 23d 2006
Acknowledgments