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Protein Expression Purification and Chromatography MPI CBG

Protein Expression Purification and Chromatography · 2017. 6. 8. · Services Offered • E. coli: •cells, vectors, and protocols Baculovirus: •insect cell suspension cultures

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Page 1: Protein Expression Purification and Chromatography · 2017. 6. 8. · Services Offered • E. coli: •cells, vectors, and protocols Baculovirus: •insect cell suspension cultures

Protein Expression Purification and Chromatography

MPI CBG

Page 2: Protein Expression Purification and Chromatography · 2017. 6. 8. · Services Offered • E. coli: •cells, vectors, and protocols Baculovirus: •insect cell suspension cultures

Outline

• Organization & Structure• Expression Platforms • Technology Development

Page 3: Protein Expression Purification and Chromatography · 2017. 6. 8. · Services Offered • E. coli: •cells, vectors, and protocols Baculovirus: •insect cell suspension cultures

BiochemistryProtein Expression and Purification (David Drechsel)Chromatography (Barbara Borgonovo)Antibodies (Patrick Keller)Mass Spectrometry (Anna Shevchenko)

Imaging Light Microscopy (Jan Peychl) Electron Microscopy (Jean-Marc Verbavatz) HT Technology Development Studio (Marc Bickle)

Molecular Biology DNA Sequencing, Genotyping (Sylke Winkler) TransgeneOmics (Mihail Sarov) Cell Technologies (Julia Jarrells, Ina Nuesslein, Christina Eugster)

Model Systems Transgenic Core Facility (Ronald Naumann) Biomedical Services (Jussi Helppi) Fish Facility (Evelyn Lehmann)

Information TechnologyBioinformatics (Ian Henry)IT Coordination (Jeff Oegema)Computer Department (Matt Boes)MTO (Daphne Meyers)

Scientific AdministrationLibrary (Silke Thüm)Grants Office (Birgit Knepper-Nicolai)International Office (Carolyn Fritzsche)Laboratory Management (Debbie Newby)Budget Office (Ulrike Adolf)Technology Transfer (Ivan Baines)

Technology Clusters

Page 4: Protein Expression Purification and Chromatography · 2017. 6. 8. · Services Offered • E. coli: •cells, vectors, and protocols Baculovirus: •insect cell suspension cultures

The TEAM

Mike Beck

Lisa Junghans

Régis Lemaitre Regina Wegner

David Drechsel

Aliona Bogdanova

Page 5: Protein Expression Purification and Chromatography · 2017. 6. 8. · Services Offered • E. coli: •cells, vectors, and protocols Baculovirus: •insect cell suspension cultures

Services Offered

• E. coli: •cells, vectors, and protocols

• Baculovirus: •insect cell suspension cultures•recombinant baculovirus stocks

• Mammalian cells: •suspension cultures•vectors and reagents for transient transfection

• Purification by affinity chromatography of over-expressed target proteins

• Reagents: PEP and Chromatography Facilities supply the Dresden research community with growth factors and enzymes for molecular biology, protein biochemistry, and high-throughput screens.

Page 6: Protein Expression Purification and Chromatography · 2017. 6. 8. · Services Offered • E. coli: •cells, vectors, and protocols Baculovirus: •insect cell suspension cultures

Avestin Emulsiflex C-5

Equipment

2 Knauer SmartLine LC

2 GE Healthcare Akta Pure LC

Viskotek TDA max GPC/SEC 305 (Malvern)

MicroScaleThermophoresis NanoTemper Technologies

Page 7: Protein Expression Purification and Chromatography · 2017. 6. 8. · Services Offered • E. coli: •cells, vectors, and protocols Baculovirus: •insect cell suspension cultures

Workflow

Extract preparation

Purification

Analysis

Cloning

E.coliprokaryotes

SF+insect cells

HEK293mammalian cells

facility

user

Page 8: Protein Expression Purification and Chromatography · 2017. 6. 8. · Services Offered • E. coli: •cells, vectors, and protocols Baculovirus: •insect cell suspension cultures

Prospect: standard expression vectors institute-wide

• Compatible vector set features:

- toxic gene (ccdB) replaced by ORF insert

- target ORF inserted at simple MCS (NotI, AscI double digest)

- vectors for all 3 expression platforms (pET, pOEM, & pTT)

- N- and C-terminal tagging cassettes: His6, MBP, GFP, RFP

- tags removable with 3C or TEV protease

“Molecular Biology for Biophysicists”

Optimized Classic Cloning vectors (pOCC)

Page 9: Protein Expression Purification and Chromatography · 2017. 6. 8. · Services Offered • E. coli: •cells, vectors, and protocols Baculovirus: •insect cell suspension cultures

E.coli expression system

• Vector based on pET 24 • standard induction protocol:

- overnight induction with 200 µM IPTG at 18°C

- auto-induction (usually also at 18°C)

Page 10: Protein Expression Purification and Chromatography · 2017. 6. 8. · Services Offered • E. coli: •cells, vectors, and protocols Baculovirus: •insect cell suspension cultures

Mammalian expression system

• Freestyle HEK293 transients• Shaking cultures (50-500 mL) in Freestyle293

serum‐free medium (Invitrogen)• Transfection of plasmids with PEI

(Polysciences, linear 25kD) • Expression at either 37°C or 31°C

Page 11: Protein Expression Purification and Chromatography · 2017. 6. 8. · Services Offered • E. coli: •cells, vectors, and protocols Baculovirus: •insect cell suspension cultures

Baculovirus infected insect cells system

• Shaking suspension cultures of SF9-ESF (Expression Systems)

• “Virus Factory” co-transfection of linearized defective baculovirus genome with rescue shuttle vector (duplicates in 24-well format)

Day 1 Day 10Day 5

transfectionharvest P1start P2 harvest P2

Page 12: Protein Expression Purification and Chromatography · 2017. 6. 8. · Services Offered • E. coli: •cells, vectors, and protocols Baculovirus: •insect cell suspension cultures

Engineering a doubly defective baculovirus genome

recombinant, viable budded virus

“The Virus Factory”

target ORF

recombinant, viable baculovirus genome

target ORF

shuttle vector

deletions in two essential genes: lef2 and ORF1629

linearized, defective baculovirus bacmid

Page 13: Protein Expression Purification and Chromatography · 2017. 6. 8. · Services Offered • E. coli: •cells, vectors, and protocols Baculovirus: •insect cell suspension cultures

BMP9 displays a very different conformation in this partof the molecule (Brown et al, 2005). Y94 that lies under-neath R192 in the complex is followed in sequence by anaspartate that is well conserved, except in TGF-bs. Thisresidue holds the fingertip loop in a conformation suitablefor follistatin binding by coordinating the main chain of thenext two residues. K102 is also highly conserved in activins Aand B, and many BMPs, but replaced by threonine in activinC and E, and by glutamate in TGF-bs. In all, most BMPs andactivins share good conservation of follistatin-binding resi-dues around the knuckle epitopes and the fingertips, in linewith their ability to bind follistatin. TGF-bs differ clearly inthese parts, as do anti-Mullerian hormone, inhibin and nodal.

Mutation of arginine 192 abolishes Fs12 bindingto activin ATo assess the role of R192 in the interaction between Fs12 andactivin A, we created an R192A mutant of Fs12 and studiedits interaction with activin A (See Supplementary data). Themutant protein fails to form a stable complex with activin Aas studied by analytical size exclusion chromatography,in conditions where the wild type eluted in a 1:2 complexfrom the column. It is also unable to inhibit activin A-inducedelongation of Xenopus animal caps and showed only weakinhibition of marker gene expression in comparison to thewild-type protein. Furthermore, affinity measurement usingITC failed to detect any binding between Fs12(R192A) and

Activin A - PDB:2arv GLECDGKV----N-ICCK-KQFFVSFK-DIGWNDWIIAPSGYHANYCEGECPSHIAGTSGSS---L-SFHSTVINHYRMRGH-S-PFANLKSCCV--PTKLRPMSMLYYDDGQN-IIKKDIQNMIVEECGCS 116 BMP2 - PDB:1rew ------------S-SCKR-HPLYVDFS-DVGWNDWIVAPPGYHAFYCHGECPFPL-----ADHLNS-TNHAIVQTLVNSVNS-K-I---PKACCV--PTELSAISMLYLDENEK-VVLKNYQDMVVEGCGCR 103 BMP7 - PDB:1lx5 ------------Q-ACKK-HELYVSFR-DLGWQDWIIAPEGYAAYYCEGECAFPL-----NSYMNA-TNHAIVQTLVHFINP-ETV---PKPCCA--PTQLNAISVLYFDDSSN-VILKKYRNMVVRACGCH 104 BMP9/GDF2 - PDB:1zkz ------AG----S-HCQK-TSLRVNFE-DIGWDSWIIAPKEYEAYECKGGCFFPL-----ADDVTP-TKHAIVQTLVHLKFP-TKV---GKACCV--PTKLSPISVLYKDDMGVPTLKYHYEGMSVAECGCR 107 TGFβ -1 - PDB:2tgi -YCFRNVQ----D-NCCL-RPLYIDFKRDLGWK-WIHEPKGYNANFCAGACPY-L-----WS---SDTQHSRVLSLYNTINPEA-S---ASPCCV--SQDLEPLTILYYI-GKT-PKIEQLSNMIVKSCKCS 112Activin A_ENSP00000242208.1 GLECDGKV----N-ICCK-KQFFVSFK-DIGWNDWIIAPSGYHANYCEGECPSHIAGTSGSS---L-SFHSTVINHYRMRGH-S-PFANLKSCCV--PTKLRPMSMLYYDDGQN-IIKKDIQNMIVEECGCS 116Activin B_ENSP00000295228.1 GLECDGRT----N-LCCR-QQFFIDFR-LIGWNDWIIAPTGYYGNYCEGSCPAYLAGVPGSA---S-SFHTAVVNQYRMRGL-N-P-GTVNSCCI--PTKLSTMSMLYFDDEYN-IVKRDVPNMIVEECGCA 115Activin C_ENSP00000308716.1 GIDCQGGS----R-MCCR-QEFFVDFR-EIGWHDWIIQPEGYAMNFCIGQCPLHIAGMPGIA---A-SFHTAVLNLLKANTAAGTTG--GGSCCV--PTARRPLSLLYYDRDSN-IVKTDIPDMVVEACGCS 116Activin E_ENSP00000266646.1 TPTCEPAT----P-LCCR-RDHYVDFQ-ELGWRDWILQPEGYQLNYCSGQCPPHLAGSPGIA---A-SFHSAVFSLLKANNPWPA----STSCCV--PTARRPLSLLYLDHNGN-VVKTDVPDMVVEACGCS 114 BMP2_ENSP00000246044.1 --QRKRLK----S-SCKR-HPLYVDFS-DVGWNDWIVAPPGYHAFYCHGECPFPL-----ADHLN-STNHAIVQTLVNSVNS-K-I---PKACCV--PTELSAISMLYLDENEK-VVLKNYQDMVVEGCGCR 109 BMP3_ENSP00000282701.1 ---QWIE-----PRNCAR-RYLKVDFA-DIGWSEWIISPKSFDAYYCSGACQFPMP-----KSLK-PSNHATIQSIVRAVGVVPGI---PEPCCV--PEKMSSLSILFFDENKN-VVLKVYPNMTVESCACR 111 BMP4_ENSP00000245451.1 --QRARKK----NKNCRR-HSLYVDFS-DVGWNDWIVAPPGYQAFYCHGDCPFPL-----ADHLN-STNHAIVQTLVNSVNS-S-I---PKACCV--PTELSAISMLYLDEYDK-VVLKNYQEMVVEGCGCR 110 BMP5_ENSP00000265030.1 --NTSEQK----Q-ACKK-HELYVSFR-DLGWQDWIIAPEGYAAFYCDGECSFPLN-----AHMN-ATNHAIVQTLVHLMFPDH-V---PKPCCA--PTKLNAISVLYFDDSSN-VILKKYRNMVVRSCGCH 117 BMP6_ENSP00000283147.1 --NSSELK----T-ACRK-HELYVSFQ-DLGWQDWIIAPKGYAANYCDGECSFPLN-----AHMN-ATNHAIVQTLVHLMNPEY-V---PKPCCA--PTKLNAISVLYFDDNSN-VILKKYRNMVVRACGCH 117 BMP7_ENSP00000265624.1 --SSSDQR----Q-ACKK-HELYVSFR-DLGWQDWIIAPEGYAAYYCEGECAFPLN-----SYMN-ATNHAIVQTLVHFINPET-V---PKPCCA--PTQLNAISVLYFDDSSN-VILKKYRNMVVRACGCH 117 BMP8A_ENSP00000327440.2 --RGSHGR----Q-VCRR-HELYVSFQ-DLGWLDWVIAPQGYSAYYCEGECSFPLD-----SCMN-ATNHAILQSLVHLMKPNA-V---PKACCA--PTKLSATSVLYYDSSNN-VILRKHRNMVVKACGCH 118 BMP8B_ENSP00000235632.1 --HGSHGR----Q-VCRR-HELYVSFQ-DLGWLDWVIAPQGYSAYYCEGECSFPLD-----SCMN-ATNHAILQSLVHLMMPDA-V---PKACCA--PTKLSATSVLYYDSSNN-VILRKHRNMVVKACGCH 118 BMP10_ENSP00000295379.1 RIRRNA-K----GNYCKR-TPLYIDFK-EIGWDSWIIAPPGYEAYECRGVCNYPLA-----EHLT-PTKHAIIQALVHLKNSQK----ASKACCV--PTKLEPISILYLDKGVV-TYKFKYEGMAVSECGCR 137 TGFβ -1_ENSP00000221930.1 -YCFSSTE----K-NCCV-RQLYIDFRKDLGWK-WIHEPKGYHANFCLGPCPYIWS---------LDTQYSKVLALYNQHNPGA----SAAPCCV--PQALEPLPIVYYV-GRK-PKVEQLSNMIVRSCKCS 112 TGF β-2_ENSP00000264103.1 -YCFRNVQ----D-NCCL-RPLYIDFKRDLGWK-WIHEPKGYNANFCAGACPYLWS---------SDTQHSRVLSLYNTINPEA----SASPCCV--SQDLEPLTILYYI-GKT-PKIEQLSNMIVKSCKCS 112 TGFβ -3_ENSP00000238682.1 -YCFRNLE----E-NCCV-RPLYIDFRQDLGWK-WVHEPKGYYANFCSGPCPYLRS---------ADTTHSTVLGLYNTLNPEA----SASPCCV--PQDLEPLTILYYV-GRT-PKVEQLSNMVVKSCKCS 112BMP9/GDF2_ENSP00000249598.1 RKRSAGAG----S-HCQK-TSLRVNFE-DIGWDSWIIAPKEYEAYECKGGCFFPL-----ADDVT-PTKHAIVQTLVHLKFPTK----VGKACCV--PTKLSPISVLYKDDMGVPTLKYHYEGMSVAECGCR 140 GDF3_ENSP00000331745.1 -VPKLSCK----N-LCHR-HQLFINFR-DLGWHKWIIAPKGFMANYCHGECPFSLT-----ISLN-SSNYAFMQALMHAVD-PE----IPQAVCI--PTKLSPISMLYQDNNDN-VILRHYEDMVVDECGCG 114 GDF5_ENSP00000246185.1 GKRPSKNL----KARCSR-KALHVNFK-DMGWDDWIIAPLEYEAFHCEGLCEFPLR-----SHLE-PTNHAVIQTLMNSMDPES----TPPTCCV--PTRLSPISILFIDSANN-VVYKQYEDMVVESCGCR 120 GDF6_ENSP00000287020.2 GKRHGKKS----RLRCSK-KPLHVNFK-ELGWDDWIIAPLEYEAYHCEGVCDFPLR-----SHLE-PTNHAIIQTLMNSMDPGS----TPPSCCV--PTKLTPISILYIDAGNN-VVYKQYEDMVVESCGCR 120 GDF7_ENSP00000272224.2 GRGHGRRG----RSRCSR-KPLHVDFK-ELGWDDWIIAPLDYEAYHCEGLCDFPLR-----SHLE-PTNHAIIQTLLNSMAPDA----APASCCV--PARLSPISILYIDAANN-VVYKQYEDMVVEACGCR 129Myostatin_ENSP00000260950.1 --CDEHST----ESRCCR-YPLTVDFE-AFGWD-WIIAPKRYKANYCSGECEFVFL---------QKYPHT---HLVHQANPRG----SAGPCCT--PTKMSPINMLYFNGKEQ-IIYGKIPAMVVDRCGCS 109 GDF9_ENSP00000296875.1 NLSEYFRQFLLPQNECEL-HDFRLSFS-QLKWDNWIVAPHRYNPRYCKGDCPRAVG-----HRYG-SPVHTMVQNIIYEKLDSS----VPRPSCV--PAKYSPLSVLTIEPDGS-IAYKEYEDMIATKCTCR 135 GDF9B_ENSP00000252677.1 --KHSGPE----NNQCSL-HPFQISFR-QLGWDHWIIAPPFYTPNYCKGTCLRVLR-----DGLN-SPNHAIIQNLINQLVDQS----VPRPSCV--PYKYVPISVLMIEANGS-ILYKEYEGMIAESCTCR 122 GDF10_ENSP00000224605.1 ---QWDE-----PRVCSR-RYLKVDFA-DIGWNEWIISPKSFDAYYCAGACEFPMP-----KIVR-PSNHATIQSIVRAVGIIP---GIPEPCCV--PDKMNSLGVLFLDENRN-VVLKVYPNMSVDTCACR 111 GDF11_ENSP00000257868.1 --CDEHSS----ESRCCR-YPLTVDFE-AFGWD-WIIAPKRYKANYCSGQCEYMFM---------QKYPHT---HLVQQANPRG----SAGPCCT--PTKMSPINMLYFNDKQQ-IIYGKIPGMVVDRCGCS 109 GDF15_ENSP00000252809.1 --HCPLGP-----GRCCRLHTVRASLE-DLGWADWVLSPREVQVTMCIGACPSQFR----------AANMHAQIKTSLHRLKPDT---VPAPCCV--PASYNPMVLIQKTDTG--VSLQTYDDLLAKDCHCI 114 Nodal_ENSP00000287139.1 ---HLPDR----SQLCRK-VKFQVDFN-LIGWGSWIIYPKQYNAYRCEGECPNPVG-----EEFH-PTNHAYIQSLLKRYQPHR----VPSTCCA--PVKTKPLSMLYVDNGR--VLLDHHKDMIVEECGCL 110 MIH/AMH_ENSP00000221496.1 RAQRSAGAT-AADGPCAL-RELSVDLR-AER---SVLIPETYQANNCQGVCGWPQSD----RNP-RYGNHVVLLLKMQVRGAALAR----PPCCV--PTAYAGKLLISLSEERISAHH--VPNMVATECGCR 142 Inhibin_ENSP00000243786.1 -PEEPAAH-----ANCHR-VALNISFQ-ELGWERWIVYPPSFIFHYCHGGCGLHIP-----PNLS-LPVPGAPPTPAQPYSLLPG----AQPCCAALPGTMRPLHVRTTSDGGYSFKYETVPNLLTQHCACI 124 Ruler 0........40........50........60........70........80........90.......100.......110.......120.......130.......140.......150.......160.

D27 K10

2Y94L9

2S90R87 Q98

I10

0I30 P32

H36

*F58

A

F58 (activin A) TGF-β2 (2tgi)(136°)

Activin A alone(97°)

Activin A with Fs12(76°)

Activin A + ActRIIB (1nys)(58°)I30

I32

L92L90

K102L100 P32

P34 H36H32I100

V98

Y94L92

Q98Q96

D27D30

R87S85

F85 (BMPRI)

N59 (BMP2)

B C

Figure 7 Follistatin-binding site conservation and structural flexibility among the TGFb family members. (A) Protomers of activin A(PDB:2arv, this study), BMP2 (1rew), BMP7 (1lx5), BMP9 (1zkz) and TGF-b2 (2tgi) were superimposed using SSM server (www.ebi.ac.uk/msd-srv/ssm) to obtain a structure-based sequence alignment. To this alignment, all members of the TGF-b family found in the human genome(www.ensembl.org) were aligned using ClustalX program, and coloured according to conservation (hydrophobics green, Cys yellow, Asp/Glublue, Arg/Lys red, Gly brown, Pro grey, uncharged hydrophilic light blue). Activin A residues involved in follistatin binding are indicated abovethe alignment. F58 that occupies part of the type I receptor-binding site is labelled with a boxed text. Grey lines indicate disulphide connectivityin activin A, dimerisation disulphide is indicated by an asterisk. (B) Side view of activin A (in orange) with residues contacting Fs12 (labelledyellow on black background), as well as F58 at the interface of activin dimer are shown as stick models. Superimposed on the activin A is BMP-2 (light grey), another known ligand of follistatin, complexed with its type I receptor (dark grey; PDB:1rew). Equivalent BMP2 residues to thosethat interact with follistatin in activin A are shown as stick models. N59 of BMP2 is shown next to the F58 of activins, and F85 of the BMP type Ireceptor is shown next to F58 of activin A, highlighting the similar positions these residues occupy with respect to the dimeric growth factor asa whole. (C) Superpositioning of various activin structures and comparison with TGF-b2. Activin A alone (red), complexed with Fs12 (green)and ActRIIB (blue) as well as TGF-b2 (yellow) were superimposed on one protomer (Ca trace on the right side) to highlight the variation in theinterprotomer angles between the proteins. The angle shown for each structure is measured between the Ca atom Y92 (or equivalent) of oneprotomer, the Ca atom of the dimerisation cysteine (C80 in activin A) and the Ca atom of Y92 in the other protomer.

Crystal structure of an activin–follistatin complexAE Harrington et al

&2006 European Molecular Biology Organization The EMBO Journal VOL 25 | NO 5 | 2006 1041composed of a 43 amino acid pro-region, 171 amino acid!N region, and a 134 amino acid !C ‘mature’ region(Mason et al. 1996). The "-subunit precursor consists ofa 290 amino acid pro-region and 116 amino acidC-terminus (Mason et al. 1996). While the partiallyprocessed !-subunit (‘!N-!C’ or ‘pro-!N-!C’) whenfound as a dimer with a mature "A subunit is biologicallyactive, the "-subunit dimers must be fully processed tobe functional (Mason et al. 1996). Secondly, the inhibinsare post-translationally modified by glycosylation (Tierneyet al. 1990). Mutagenesis of the glycosylation sites oninhibin !-subunit results in a secreted protein approxi-mately 27 kDa in size (Mason et al. 1996). While it isunknown whether non-glycosylated inhibin maintainsbiological activity, blocking the multiple glycosylation siteson TGF-" results in non-secreted and inactive proteinproducts (Brunner et al. 1992). Thirdly, activin is pro-

duced as a bioproduct of inhibin production. Since thebiological functions are antagonistic, it is important thatpurified preparations be completely free of contaminationfrom the other protein.

Strategies for purification must take into account theneed for dimerization, cleavage and glycosylation to pro-duce fully functional proteins. Bacterial overexpression is acommon means to produce large quantities of recombinantproteins; however, no bacterial system can meet theseprocessing requirements. Affinity purification that exploitsepitope-tagged proteins also is a well-characterized meansto generate large quantities of protein. However, forinhibin and activin, N-terminal tags are removed duringnormal processing. In addition, C-terminal epitope tagson the !-subunit render the protein unprocessible, similarto the inability of a C-terminally modified TGF-" todimerize and be proteolytically processed (Wakefield

Figure 1 Diagrammatic representation of inhibin (left) and activin (right) subunit assembly. (A) Structure of inhibin !- and inhibin/activin"-subunits. (B) Dimerization and cleavage of the two subunits give multiple protein products. Activin is a dimer of the "-subunits andinhibin is a dimer of the !- and "-subunits. Sizes are indicated to right. Not all the glycosylated forms are represented. (C) Mature inhibinA and mature activin A are dimeric C-terminal cleavage products of 32–34 kDa and 28 kDa respectively.

S A PANGAS and T K WOODRUFF · Production of inhibin and activin200

www.endocrinology.orgJournal of Endocrinology (2002) 172, 199–210

composed of a 43 amino acid pro-region, 171 amino acid!N region, and a 134 amino acid !C ‘mature’ region(Mason et al. 1996). The "-subunit precursor consists ofa 290 amino acid pro-region and 116 amino acidC-terminus (Mason et al. 1996). While the partiallyprocessed !-subunit (‘!N-!C’ or ‘pro-!N-!C’) whenfound as a dimer with a mature "A subunit is biologicallyactive, the "-subunit dimers must be fully processed tobe functional (Mason et al. 1996). Secondly, the inhibinsare post-translationally modified by glycosylation (Tierneyet al. 1990). Mutagenesis of the glycosylation sites oninhibin !-subunit results in a secreted protein approxi-mately 27 kDa in size (Mason et al. 1996). While it isunknown whether non-glycosylated inhibin maintainsbiological activity, blocking the multiple glycosylation siteson TGF-" results in non-secreted and inactive proteinproducts (Brunner et al. 1992). Thirdly, activin is pro-

duced as a bioproduct of inhibin production. Since thebiological functions are antagonistic, it is important thatpurified preparations be completely free of contaminationfrom the other protein.

Strategies for purification must take into account theneed for dimerization, cleavage and glycosylation to pro-duce fully functional proteins. Bacterial overexpression is acommon means to produce large quantities of recombinantproteins; however, no bacterial system can meet theseprocessing requirements. Affinity purification that exploitsepitope-tagged proteins also is a well-characterized meansto generate large quantities of protein. However, forinhibin and activin, N-terminal tags are removed duringnormal processing. In addition, C-terminal epitope tagson the !-subunit render the protein unprocessible, similarto the inability of a C-terminally modified TGF-" todimerize and be proteolytically processed (Wakefield

Figure 1 Diagrammatic representation of inhibin (left) and activin (right) subunit assembly. (A) Structure of inhibin !- and inhibin/activin"-subunits. (B) Dimerization and cleavage of the two subunits give multiple protein products. Activin is a dimer of the "-subunits andinhibin is a dimer of the !- and "-subunits. Sizes are indicated to right. Not all the glycosylated forms are represented. (C) Mature inhibinA and mature activin A are dimeric C-terminal cleavage products of 32–34 kDa and 28 kDa respectively.

S A PANGAS and T K WOODRUFF · Production of inhibin and activin200

www.endocrinology.orgJournal of Endocrinology (2002) 172, 199–210

Activin A

Page 14: Protein Expression Purification and Chromatography · 2017. 6. 8. · Services Offered • E. coli: •cells, vectors, and protocols Baculovirus: •insect cell suspension cultures

Replace baculovirus conotoxin gene with furin

furin+ target ORF

shuttle vector

furin

furin baculovirus

defective baculovirus

bacmid

replace conotoxin locus with furin gene

target ORF

rescue with shuttleby recombination

in SF9 cells

viable, furin over-expressing

recombinant baculovirus

Page 15: Protein Expression Purification and Chromatography · 2017. 6. 8. · Services Offered • E. coli: •cells, vectors, and protocols Baculovirus: •insect cell suspension cultures

Activin a secreted by SF9 insect cells

inhibin beta a

HIC

SEC

IEX

CM IEX

FT P1 P2

HIC

FT P P1 P2

GFHIC

Page 16: Protein Expression Purification and Chromatography · 2017. 6. 8. · Services Offered • E. coli: •cells, vectors, and protocols Baculovirus: •insect cell suspension cultures

‘Processing’ of Hedgehog precursor

Mann and Beachy, 2004

+ ? (Shh-N)

Mann and Beachy, 2004

Ohlig et al., 2012

Palm et al., 2013

Expression and purification of h-Shh

Page 17: Protein Expression Purification and Chromatography · 2017. 6. 8. · Services Offered • E. coli: •cells, vectors, and protocols Baculovirus: •insect cell suspension cultures

MS analysis

Rod Chalk, SGC Oxford

Heparin/mAb

SEC

IEX

RP

affinity (mAb)

Conditioned medium

Cell extract

different vectors and treatments

HeLa, HEK293, S2 cells

h-Shh purification

Page 18: Protein Expression Purification and Chromatography · 2017. 6. 8. · Services Offered • E. coli: •cells, vectors, and protocols Baculovirus: •insect cell suspension cultures

SLS = K Mw (Conc) (RI)2

SEC-SLS

elongated proteinvs

aggregates

monomer vs

dimer

different conformations

Page 19: Protein Expression Purification and Chromatography · 2017. 6. 8. · Services Offered • E. coli: •cells, vectors, and protocols Baculovirus: •insect cell suspension cultures

Technology development

• CRISPR/Cas9 (TransgeneOmic, DNA, Transgenic Core facilities )

• Solubility screens for intrinsically disordered proteins

• Biophysical characterization (CD, DLS)

Page 20: Protein Expression Purification and Chromatography · 2017. 6. 8. · Services Offered • E. coli: •cells, vectors, and protocols Baculovirus: •insect cell suspension cultures

Minutes12 14 16 18 20 22 24 26 28 30

mS/

cm

26.2

26.4

26.6

26.8

27.0

27.2

mS/

cm

26.2

26.4

26.6

26.8

27.0

27.2

S 2500std1171111

S 2500

C:\Bioline\Borgonovo\Data\Molecular Cellbiology.10002 17-11-2011 09-39-50.dat, S 2500

c:\bioline\borgonovo\data\cytochromec.dat, S 2500

David Drechsel and all lab

Petra BornEaton’s lab

MPI CBG, DresdenRod Chalk

Nicola Burgess-BrownSGC, University of Oxford

Users

Thanks!

P4EUs