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Lecture Outline - Chapter 2
THE CHEMICAL BASIS OF LIFE
I. Basic Chemistry
A. A basic knowledge of chemistry is essential to understanding anatomy and
physiology
B. All of the functions of the body are the result of chemical reactions.
1. Digestion, muscle contrac tion, metabolism and generation of nerve
impulses can all be described as chemical reactions.
2. A review of basic chemical principles, terminology and symbols will
make anatomy and physiology more understandable.
II. Matter M ass and Weight
A. Matte r and the Elements
1. Matter = anything that occupies space and has mass.
2. Mass = the amount of matter in an object
3. Weight = is the gravitational force acting on an object of a given
mass.
4. Elements = simplest form of matter with unique chemical properties
a. 112 known elements (92 naturally occurring)
5. Atom = the smallest particle of an element that has the chemical
characteristics of that element and are the smallest units of matter that
can undergo chemical change.
a. An element is composed of atoms of only one kind.
b. Each element or atom is represented by a symbol
B. Atomic Structure
1. Three major subatomic structures make up a toms
a. Neutrons:
(1) no electric charge, mass = 1 Dalton
b. Protons :
(1) positive charge, 1 Dalton
c. Electrons
(1) negative charge
(2) equal in magnitude to positive charge of proton
(3) mass = 1/2000 Dalton
2. Atoms generally have equal numbers of protons and electrons thus
the charges cancel each other out leaving the a tom e lectrically
neutral.
2
3. Protons and neutrons from the nucleus of the a tom.
a. the nucleus make up more than 99.9% of the mass.
4. Electron are located outside of the nucleus
a. Most of the volume of the atom is occupied by the electron
b. electron density diagram: predict where an electron is most
likely to be found at any given moment.
C. Atomic Number and mass
1. atomic number = the number of protons in its nucleus.
2. Each proton or neutron weighs one atomic mass unit or Dalton
3. mass number = the number of protons p lus the number of neutrons
for an element.
4. Electrons determine the chemical properties of the atom.
5. When the number of protons and number of neutrons are equal, the
atom is electrically neutral.
6. Electron shells - Electrons encircle the nucleus in electron shells or
energy levels.
a. Orbita l - an e lectron can occupy any position in a certa in
volume of space ca lled an orb ital.
b. Orbital is like a shell beyond which electrons don’t pass.
c. The innermost she ll can hold up to two electrons.
d. The oute rmost she ll, holding the valence electrons, can have
eight electrons.
D. Isotopes and Atomic Mass
1. Isotopes are two or more forms of the same element that have the
same number of protons and electrons but vary in their numbers of
neutrons.
a. Same atomic number but different mass numbers.
b. Eg. 3 isotopes of hydrogen:
(1) hydrogen - 0 neutrons written ( 1H) symbol with mass
number
(2) deuterium - 1 neutron (2H)
(3) tritium - 2 neutrons (3H).
2. All isotopes of the same element behave the same chemically.
3
3. Atomic Mass
a. Individual atoms have very little mass.
(1) Eg. Hydrogen = 1.67 X 10 -24g.
b. To avoid us ing such small numbers w e use a system of relative
atomic mass
(1) Unified atomic mass units (u) or Dalton (D)
c. Each proton or neutron has an atomic mass of 1 .
(1) C12 is used as the standard
(a) One atomic mass unit Equals 1 /12 the mass of Carbon
(6 protons and 6 neutrons)
(2) The atomic mass = the average mass of its naturally
occurring isotopes taking into account the relative
abundance of each isotope.
(a) Ie. Carbon has the isotopes 12C, 13C and 14C.
(b) The atomic mass of Carbon is 12.01 D
(c) Slightly above 12 because of small amounts of 13C and14C.
E. Electrons and chemical bonding
1. The chemical behavior of an atom is de termined largely by its
outermost electrons (valence electrons ).
2. A chemical bond is an attrac tion between atoms usually to form
stable valence shells
a. An atom is most stable w hen the va lence shell is full.
3. Chemical bonding occurs w hen the outermost electrons a re
transferred or shared between atoms.
4. The number of bonds an atom can make depends on the number of
elec trons in its oute rmost orb ital.
5. Chemical bonding can be grouped into three categories
a. Ionic , covalent, and metallic
6. Ionic Bonding
a. If an atom loses or gains electrons it is no longer electrically
neutral (carries a charge) and is called an ion.
(1) Ions are charged particles.
(2) Eg. If an atom of Na loses an electron it becomes
positively charged (Na+). Or if an atom of Cl gains and
electron it will become negatively charged (Cl-).
4
b. cations - Positively charged ions ( have lost an e lectron)
c. anions - Negatively charged ions are called(have gained an
electron)
d. Oppositely charged molecules are attracted to each other
and tend to remain close to each other.
e. Ionic bonding occurs w hen one or more valence e lectrons
from one atom are complete ly transferred to a second atom.
(1) electrons are not shared
(2) Eg. Na+ and Cl- ions are held toge ther by ionic
bonding to form an a rray of ions ca lled N aCl or table
salt.
(a) Na - 11 e- (2 + 8 + 1)
(b) Cl- 17 e- (2+ 8 + 7)
f. Common ions found in the body include:
(1) Ca++, Na+, K+, H+, OH-, Cl-
g. Ionic compounds readily form crystals.
h. Ionic bonds a re weak because ions tend to dissocia te in
water.
7. Covalent Bonding
a. Covalent bonding results when atoms share one or more
pairs of valence electrons to form stable valence shells.
(1) The resulting structure is called a molecule.
b. Eg. Two hydrogen molecules from a molecule. H-H
(1) Each H has one electron, as the two H move close
together the positive nucleus is attracted to the neg.
electrons.
(2) At an optimal distance the two H atoms begin sharing
electrons.
(3) The two atoms are now held together by a covalent
bond.
c. single covalent bond is formed when one elec tron pair is
shared between two atoms
d. A double covalent bond is formed when two atoms share 4
electrons, two from each atom
(1) Eg. O=O, CO2 (O=C=O)
e. Polar and non polar covalent bonds
(1) nonpolar covalent bond is formed when electrons are
5
shared equally between atoms
(2) polar covalent bonds are formed when the electrons
are not shared equally but a re attracted more strongly
by one nucleus than the other.
(a) Eg. H2O – oxygen attracts elec trons more strongly
than H. (oxygen side of molecule is more
negative)
(b) Oxygen, nitrogen and phosphorus have a strong
tendency to pull electrons toward themselves.
8. Metalic bonding
a. In metalic bonding the outermost shell of electrons is shared
equally among all of the atoms in the sample.
b. The electrons form a “sea of electrons
c. Elec trons move freely between nucle i of atoms. For this
reason metals are excellent conductors of electricity.
F. Molecules and Compounds
1. Molecule - two or more atoms chemically combined form a
molecule.
2. Molecular formula’s - symbol of atom and subscript number of
that specific atom in the molecule.
a. Eg. C6H12O6 (sugar)
b. Molecule can be made of two atoms of the same kind (O2 or
H2) or of different kinds
3. Compound - is a substance composed of two or more different
types of atoms that are chemically combined.
a. H2 is not a molecule because it is not made or two or more
different kinds of atoms.
b. H2O is a compound
G. Intermolecular forces
1. Result form weak elec trostatic attractions betw een the
oppos itely charged parts of different molecules o r between ions
and molecules
a. These forces are much weaker than the chemical bonds we have
just talked about
b. Molecules with polar covalent bonds have positive and negative
6
ends.
(1) The pos itive end of one molecule will be attracted to the
negative end of another. (Eg. H2O)
2. Hydrogen bonds are formed w hen oppositely charged ends of one
polar molecule are attracted to another polar molecule
a. A weak hydrogen bond forms be tween the slightly positive
hydrogen of one molecule and the slightly negative oxygen or
nitrogen portion of another.
b. Hydrogen bonds are important for maintaining the
three-dimensiona l structure of large, b iologically important
molecules.
H. Solubility and Dissoc iation
1. The ability of a substance to dissolve is called solubility.
a. Charged and polar substances ( Na+ , Cl-, glucose dissolve
readily in water.
b. Nonpolar substances such as oils do not dissolve.
2. Ionic compounds dissolve in water because their ions dissociate or
separate from each other
a. There cations are attracted to the negative ends of water
molecules
b. There anions are attracted to the positive ends of the water
molecule.
3. Covalent compounds generally remain intact in water even though
they are surrounded by water.
BS264 Lect. 4 Ch 2 Chem
7
CHEMICAL REACTIONS
I. Atoms, Ions molecules compounds interact to form or break chemical
bonds.
1. Reac tants: substances that enter a reac tions
2. Products : resulting products o f a reactions
a. Reactants º Products
J. Synthesis Reactions
1. 2 or more chemical combine to form new and larger produc ts
a. Eg. 2 amino acids ºdipeptide + H2O ( dehydration)
b. ADP + Pi º ATP
2. Synthesis reactions within the body are refereed to as anabolic.
(Anabolism).
K. Decom position Reactions
1. Large reactants are chemically broken down into two or more smaller
products .
a. Eg. Disacharide + H2O º 2 X glucose (Hydrolysis).
2. catabolism - Decomposition reactions that occur in the body are
refereed to as .
3. All of the anabolic and catabolic reactions in the body collective ly are
defined as Metabolism
L. Oxidation - R eduction Reactions
1. Chemical reaction that results from the exchange of electrons
a. Oxidation - loss of an elec tron by an atom.
b. Reduction - gain of an electron by an atom.
2. Because the loss of an electron by one atom is accompanied by the
gain of an electron in another atom these reactions are called
Oxidation - Reduction Reactions.
M. Reversible reactions
1. Chemical reactions in which the reaction can proceed from reactants
to produc ts and products to reactants
a. A + B º C + D
b. Equilibrium the point at which product formation is equal to the
rate of the reverse reac tion.
c. Eg. CO2 + H2O º H2CO3 º H+ + HCO3-
(1) H2CO3- carbonic acid; HCO3-- bicarbona te
BS264 Lect. 4 Ch 2 Chem
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N. Rate of Chemical Reactions
1. Rate is influenced by several factors:
a. Reactants - differ in their ability to undergo chemical reactions.
b. Concentration - greater concentrations of reactants generally
cause reac tions to proceed faster.
c. Temperature - reaction speed increases with higher temps.
(Molecules move faster - bump into each other more.
d. Catalysts - substance that increases the rate at which a chemical
reaction proceeds.
(1) Enzymes - are prote in molecules that ac t as cata lysts in the
body.
III. ENERGY
A. Energy is defined as the capacity to do work.
B. Two forms of energy:
1. Potential energy - s tored energy
a. eg. coiled spring - has potential to do work but no work is
accomplished.
2. Kinetic energy - form of energy that actually does work.
a. eg. uncoiling spring pushing an object.
C. Energy can neither be created or destroyed
1. However potential energy can be converted to kinetic energy and vice
versa.
D. Energy can take several forms.
1. Electric Energy - movement of ions or electrons
a. Eg. nervous impulse - movement of ions across a membrane.
2. Electromagnetic Energy - energy that moves in waves (pebble in a
pond)
a. elec tromagnetic waves are dis turbances of elec tric o r magnetic
fields.
b. variety of wave types depending on wavelength.
(1) X- ray, ultraviolet, vis ible light, infrared, microwave, radio
waves.
3. Chemical Energy - result from the relative positions and interac tions
among charged subatomic particles.
a. Similarly charged particle close together have high potential
energy.
BS264 Lect. 4 Ch 2 Chem
9
b. Our bodies use chemical energy in the form of food. The
potential energy between food and waste products is used for
growth repair movement and heat prodution within the body.
c. Metabolism - in metabolism ionic and covalent chemical bonds
are formed and broken .
(1) The relative positions of electrons and nuclei changes
producing changes in chemical energy.(FIG 2.11)
(a) Formation of chemical bonds results in a increase of
potential energy and requires the input of energy.
i) ADP + Pi + energy ºATP
ii) energy comes from the chemical bonds in food.
(2) Breaking a chemical bond results in an decrease of potential
energy and results in the release of energy.
(a) ATP º ADP + Pi + energy
d. Photosynthesis - process by which plants capture energy in
sunlight and incorporate it into chemical bonds
4. Mechanical energy- energy resulting form the position or movement
of an objec t.
a. In the body, chemical energy is converted into mechanical
energy that results in body movement ie. walking, beating heart.
5. Heat energy
a. Heat is the energy that flows between objects that are at
different temperatures.
b. Heat is always transferred from a hotter object to a cooler object
c. All other forms of energy can be converted to heat energy.
(1) When a moving object comes to rest the kinetic energy of
the objec t is converted to heat energy by friction.
(2) Potential energy in chemical bonds can also be released as
heat energy during chemical reactions.
BS264 Lect. 4 Ch 2 Chem
10
IV. INORGANIC CHEMISTRY
Inorganic chemistry - deals with those substance that do not contain carbon
Organic chemistry - the study of carbon-containing substances
Exceptions: carbon monoxide and carbon dioxide are considered inorganic.
A. Water
1. 67% of body is water
a. Water is a polar molecule and forms hydrogen bonds.
b. These hydrogen bonds organize water molecules into a lattice
that holds the waster molecules together.
2. Water has properties that are well suited for many functions in living
organisms:
a. Stabilizing body temperature
(1) Water has a high specific heat
(a) A relatively large amount o f heat is required to change
the temperature.
(b) Tends to resist large temperature fluctuations.
(2) Water evaporates (changing from a liquid to a gas) - this
requires heat (540 calories/ gram)
(a) Evapora tion of swea t therefore effectively rids the
body of excess hea t.
b. Protection
(1) Water is an effective lubricant
(a) Prevents damage due to friction (eg. eye against
eyelid)
(b) Provides a cushion around organs (eg C SF and bra in)
c. Chemical reactions
(1) Water is an excellent so lvent.
(a) Many reacting molecules must be dissolved in water
within the body before they can react.
(2) Dehydration and hydrolysis reactions require water.
d. Mixing medium
(1) Water can mix with other solutions to form solutions,
suspensions and colloids
(a) solutions: any liquid that contains dissolved substances
(eg. Sweat contains NaCl etc.
(b) suspens ions: a liquid that contains non-dissolved
materials that set tle out of o f the liquid unlesss it is
BS264 Lect. 4 Ch 2 Chem
11
continually shaken. (Eg. Blood)
(c) colloid: a liquid tha t contains nondissolved materials
that do not settle out o f liquid. (Water and pro teins
inside the cell).
B. Solution Concentrations
1. Solutions are made up of a solvent (the liquid portion) and solutes
(substances dissolved in the solvent).
2. The concentration of a solution can be expressed in a number of
different ways:
a. As a percentage (ie. A 10% solution equals 10 g of solute in 100
ml of solution etc. )
b. As a osmolarity (1 osmole = 1 mole (Avegadros’s # of particles)
in 1 kilogram of water)
(1) Osmolarity is a re flection of the number of particles in a
solution and not the type of particle in a solution.
(2) The osmolarity of body fluids is important because it
influences the movement of water in and out of cells.
(3) Note: difference between molality and osmolality is that
osmolality takes into acount the number of particles a
molecule breaks into when it goes into solution. (A 1 molar
solution of NaCL = a 2 osmoler solution of NaCL because
the Na+ and Cl- are separated in water.)
C. Acids and Bases
1. Acid : defined as a proton donor.
a. A Hydrogen atom without its electron is a proton doner
(H+)–any substance tht releases H+ ion is therefore considered
and acid.
(1) eg. HCl º H+ + Cl- (HCl is an acid because it gives up H+
when put into solution.)
2. Base: defined as a proton acceptor
a. Any substance that binds to hydrogen ions is a base.
(1) eg. NaOH ºNa+ + OH- OH- + H+ ºH2O (hydroxide
ions are proton acceptors)
3. The more freely the acid or base dissociates the stronger it is.
a. Strong ac id : HC l ºH+ Cl-
(1) dissociates almost completely and therefore is a strong acid.
b. Weak Acid : Acetic acid CH3COOH º CH3COO- + H +
BS264 Lect. 4 Ch 2 Chem
12
(1) Some dissociates and some does not.
(2) An equilibrium is reached between the ions and the
undissociated weak acid.
4. The pH Scale
a. The pH scale is a means of referring to the H+ content of a
solution.
b. Pure water is defined as neutral and has a pH of 7.
(1) Has an equal concentration of H+ and OH- ions
c. Solutions with a pH less than 7 are acidic (have a higher
concentration of H+ than OH-)
d. Solutions wtih a pH greater than 7 are basic or alkaline ( have
lower concentration of H+ compared to OH-).
e. pH stands for the power or H concentration.
(1) logarithmic scale - a change of pH by one unit represents a
10 fold change in the concentra tion of H+.
(2) pH of 6 has a 10 times as many H+ ions than a solution
with a pH of 7 and 100 times as many H+ ions as pH 8.
5. Salts
a. A salt is compound consisting of a cation other than H+ and an
anion other than a hydroxide ion.
b. Typically, when salts such as NaCl dissociate in ater hey form
positively and negatively charged ions.
6. Buffers
a. The chemical nature of many molecules changes as the pH of a
solution in which they are dissolved changes.
(1) eg. Most enzymes work within a narrow pH range.
(2) Survival of an organism depends on its ability to mainta in it
pH level within a narrow range.
b. The body uses buffers to regulate pH levels.
c. Buffer: solution of a conjuga ted acid-base pair in w hich the acid
component and the base component occur in similar
concentra tions.
(1) A conjugate base is a ll that remains of an acid a fter the
hydrogen ion (pro ton) is lost.
(2) A conjuga te acid is formed when a hydrogen ion is
transfered to the conjugate base.
(3) Two substances related in this way make up a conjugate
BS264 Lect. 4 Ch 2 Chem
13
acid-base pair
(a) eg. Carbonic acid (conjugate acid) and bicarbona te
conjugate base) H2CO3 WH+ + HCO3-
(b) reversible reaction results in an equilbrium.
(4) The conjugated acid base pair can resist changes in pH
because of this equilibrium.
(a) If an acid is added to the buffer? H+ combine with the
base component — the concentration of H+ ions does
not increases as much as it would without this reaction.
(b) If a base is added to the buffer? The conjugate acid
can release H+ which combines w ith the OH- to form
water. The net result is that the H+ ion concetration
stays within a normal range.
(c) The greate r the buffer concentration the more e ffective
it is at resisting changes in the pH.
(d) Important buffers in the body Include: bicarbonate,
phosphates, amino acids, and proteins.
D. Oxygen
1. Another important inorganic molecule is oxygen.
2. Oxygen consists of two oxygen atoms bound by a double covalent
bond.
3. Oxygen is required in the final steps of changing food into usable
energy in our bodies.
E. Carbon dioxide
1. One carbon and two oxygen
2. Produce when organic molecules are metabolized
3. CO2 is eliminated from the cell, travels through the blood and then is
exhausted through the lungs.
4. CO2 accumulation in cells is toxic.
BS264 Lect. 4 Ch 2 Chem
14
V. ORGANIC CHEMISTRY
-Organic chemistry is carbon based.
-Carbons ability to form covalent bonds with other atoms makes possible the
formation of large diverse complicated molecules (Carbon forms the backbone of
many large molecules).
-Four major groups of o rganic molecules a re essential to living organisms:
carbohydrates
lipids
proteins
nucleic acids.
A. Carbohydrates
1. Characteristics
a. Composed of carbon, hydrogen, and oxygen
b. range in size from very small (simple sugars) to very large
(polysaccharides)
c. For each carbon there are genera lly 2 H+ and 1 O atom.
d. Carbo - hydrates = carbon + watered
(1) ie because they conta in so much oxygen they are soluble in
water.
2. Monosaccharides
a. Monosaccharides or simple sugars are the building blocks for large
carbohydrates.
(1) Commonly contain 3, 4, 5
or 6 carbons.
(2) Suffix -ose denotes a sugar
molecule
b. Common 6 carbon sugars
(hexose) such as glucose, fructose
and galactose are isomeres
(1) Isomeres are molecules
with the same chemical
formula but differ in the
arrangement of those
chemicals.
(2) Glucose is the major carb
in blood
BS264 Lect. 4 Ch 2 Chem
15
(3) Fructose and galactose are found in foods.
(4) Important 5 C sugars include ribose and deoxyribose found in
RNA and DN A. Respectively
3. Disaccharides
a. Composed of two simple
sugars combined through a
dehydra tion synthesis
reaction L(1) Glucose + fructose
= sucrose (tab le
sugar) + water.
(2) Glucose + galactose
= lactose (milk
sugar)
4. Polysaccharides
a. Consist o f many
monosaccharides bound
together to form long chains.
b. These chains are can be either straight or branched
c. Glycogen - composed of many glucose molecules (important storage
molecule.
(1) highly branched
(2) Glucose for muscle contrac tion is generally s tored as glycogen in
the liver or muscle.
d. Starch and cellulose (two other important polysaccharides) found in
plants.
(1) composed of long chains of glucose.
(2) fewer branches than glycogen.
(3) humans have the necessary enzymes to break down s tarch but
lack the enzymes to break down cellulose.
(4) broken down by a hydrolys is reaction.
BS264 Lect. 4 Ch 2 Chem
16
B. LIPIDS - the second major group of organic molecules common in living
things.
1. Composed mainly of C, O and H ,
a. like carbohydrates however the proportion of Oxygen is much lower
(1) less polar than carbs
(2) insoluable in water.
(a) soluable in nonpolar organic solvents such as alcohol or
acetone.
b. Lipids differ in chemical structure but are put into the lipid category by
virtue of a common physical property - they are insoluble in water.
c. Phosphorus and nitrogen are also minor components of lipids.
d. Categories of lipids:
(1) Fats
(a) broken down by hydrolysis reactions in the cell to release
energy.
(b) excess chemical energy is stored as fat in the body
(c) fat provides protection and padding of organs, also prevents
heat loss.
(2) LTriacylglycerols (triglycerides)
(a) constitute 95% of the fat in the human body.
(b) made up of glycerol and fatty acids.
(c) Glycerol - three carbon molecule with hydroxyl groups
attached to each
carbon a tom.
i) described according to
the number of fatty
acid chains attatched
to them. –
monoacylglycerol,
diacylglycerols etc.
(d) Fatty acids - straight
chains of carbon atoms
with a carboxyl group
at one end (-COOH)
i) the carboxyl group is responsible for the acidic nature.
ii) differ in the degree of saturation of their carbon chains.
a) Saturated - only single covalent bonds betw een carbons
(beef, pork, butter, eggs, coconut oil contain a high
percentage of saturated fat.)
BS264 Lect. 4 Ch 2 Chem
17
b) Unsaturated - one or more double bonds
c) monounsturated - (one double bond) olive oil, peanut oil
d) Polyunsaturated - (two or more double bonds) safflower,
corn, fish -don’t contribute to heart disease.
(3) Phospholipids
(a) Similar to triacyl- glycerols except one fatty acid chain is
replaced by a molecule containing
phosphate and usually nitrogen.
(b) polar at one end
(phosphate end)
and nonpolar at
the other (carbon
chain).
i) polar end-
hydrophilic
ii) nonpolar end -
hydrophobic
(c) Important
component o f cell
membranes
i) Structure allows the formation of micelles and lipid bilayer.
(4) Steroids
(a) 4 ring like structures
i) 3- 6 carbon rings and 1- 5 carbon ring.
(b) non soluble in water and therefore catagorized as lipids.
(c) includes: cholestero l, estrogen, testosterone, progesterone
and bile salts.
(d) Cholesterol is an important because:
i) other stero id molecules are synthesized from it.
ii) component of cell membranes (fluidity).
(e) Sex steroids:
i) important in reproductive behaviors and functions.
ii) Produce secondary sex characteristics.
iii) Testosterone - increases muscle and bone mass
a) side effects - mental problems, bloating face, violent
mood swings, depression, liver damage, increase in blood
BS264 Lect. 4 Ch 2 Chem
18
cholesterol leading to serious cardiovascular problems,
reduced sex drive, infertility.
e. Prostiglandins.
(1) fatty acid with a cyclic head group.
(2) Regulatory functions
(a) regulate blood vessel diameter, ovulation, uterine contraction,
inflamation, blood clotting.
C. Proteins - the third major group of organic molecules common in living
things.
1. Biological polymer made up of amino acids.
2. Seven c lasses of Prote ins:
a. Structural
b. Contractile
c. Storage
d. Defensive
e. Transport -
f. Signal -
g. Enzymes -
3. Proteins Contain: carbon, hydrogen, oxygen and nitrogen (some sulfur)-
a.
4. Protein Structure
a. Made up of amino acids.
(1) amino acids contain:
(a) carboxyl group (-COO H) and an amine group (-NH2).
(2) There are 20 different amino acids
(a)
(3) The amino ac ids form long chains held together by peptide
bonds : covalent bond formed by dehydration synthesi
BS264 Lect. 4 Ch 2 Chem
19
(4) Proteins are polypeptides composed of hundreds of a.a.
(5) There are 20 different a.a. therefore the potential number of
different protein molecules is enormous.
b. Proteins shape determines its function
(1) Each Proteins molecule has a specific three dimensional shape
determined by its amino acid sequence,
(a) Denaturation -unraveling of protein chain -
i) loss of shape results in loss of function.
c. Proteins can have four different structural levels
(1) Primary structure -
(a)
(2) Secondary structure -
(a)
(b)
(3) Tertiary structure -
(a)
(b)
i) Disulfide bonds:
ii) interaction with water
(c)
(4) Quaternary structure
(a)
(b)
(c)
(d)
D. NUCLEIC ACIDS: DNA and RNA
1. Deoxyribonucleic ac id (DNA)- the genetic materia l of the cell
2. Ribonucleic acid (RNA)
a. Structurally related to DNA
b. Three types
(1)
(2)
(3)
c. Means of translating the gene tic message from DNA to
protein.(Chapter 3)
BS264 Lect. 4 Ch 2 Chem
20
3. Nucleic acids
a. Large molecules composed of C H O N P
b. DNA and RNA composed of basic building blocks called Nucleotides.
(1) Figure 2.24
(2)
(3)
(4) The organic bases are:
(a) thymine, cytosine, uracil (single ringed pyrimidines)
(b) guanine and adenine (double ringed purines)
(5) Nucleotides are joined in a chain to form the nucleic acids.
c. DNA
(1)
(2)
(3) Adenine binds only to Thymine - allows 2 hydrogen bonds
(4) Cytosine binds only to guanine - allows 3 hydrogen bonds
(5) chromatin =
(6) Histones =
(7) chromosomes =
d. RNA
(1)
(2)
(3) uracil substitutes for thymine
e. The sequence of organic bases in DNA s tores gene tic information.
(1) The sequence of organic bases in DNA ultimately dicta tes the
sequence of a.a. found in protein molecules.
(2) Because enzymes are prote ins- DNA ultimately determines the
rate and type of chemical reactions in the cell.
E. Adenos ine Triphosphate
1. Consists of adenosine and three phosphate groups. Fig. 2.27
2.
3.
4.
5.
6.
7. Once produced ATP can be used to provide energy to other chemical
reactions
a. ATP º ADP + P + energy