25
NICD-NHLS QUICK REFERENCE GUIDE FOR THE LABORATORY DIAGNOSIS OF PRIORITY COMMUNICABLE DISEASES Developed by: The National Institute for Communicable Diseases (NICD) A division of the National Health Laboratory Service (NHLS) Version 2.1 Last updated: 2 February 2012

NICD-NHLS QUICK REFERENCE GUIDE FOR …. Introduction3 2. Acute Flaccid Paralysis or Polio (I CD-10 A80)

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NICD

-NHL

S QU

ICK

REFE

RENC

E GU

IDE

FOR

THE

LABO

RATO

RY

DIAG

NOSI

S OF

PR

IORI

TY C

OMMU

NICA

BLE

DISE

ASES

Deve

lope

d by

: Th

e Nat

iona

l Inst

itute

for C

omm

unica

ble D

iseas

es (N

ICD)

A

divis

ion

of th

e Nat

iona

l Hea

lth L

abor

ator

y Ser

vice (

NHLS

)

Ve

rsio

n 2.1

La

st u

pdat

ed: 2

Feb

ruar

y 201

2

Tabl

e of C

onte

nt

1. Int

rodu

ction

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

......3

2.

Acute

Flac

cid P

araly

sis or

Poli

o (IC

D-10

A80

)......

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

..4

3. An

thrax

(ICD

-10 A

22)..

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

....5

4. Bo

tulism

(ICD

-10 A

05.1

/ A48

.5)....

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

.6

5. Ch

olera

(ICD

-10 A

05.8)

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

...7

6. Di

phthe

ria (I

CD-1

0 A36

)......

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

....8

7. Le

gione

llosis

(ICD

-10 A

48.1)

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

...9

8. Me

asles

(ICD

-10 B

05)..

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

.10

9. Pe

rtuss

is (IC

D-10

A37

)......

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

....11

10

. Me

ningo

cocc

al Di

seas

e (IC

D-10

A39

)......

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

.....1

2 11

. Pl

ague

(ICD

-10 A

20)..

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

...13

12

. Ra

bies d

iseas

e in h

uman

s (IC

D-10

A82

).....

........

........

........

........

........

........

........

........

........

........

.......

........

........

........

........

........

........

........

........

........

........

........

........

..14

13.

Rift V

alley

feve

r (IC

D-10

A92

.4)....

........

........

........

........

........

........

........

........

........

........

........

.......

........

........

........

........

........

........

........

........

........

........

........

........

........

.15

14.

SARS

(Pro

vision

al IC

D-10

U04

.9)....

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

.....1

6 15

. Sm

allpo

x (IC

D-10

B03

)......

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

....17

16

. Ty

phoid

Fev

er (I

CD-1

0 A01

.0)....

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

...18

17

. Vi

ral H

emor

rhag

ic Fe

vers

(ICD-

10 A

96)..

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

......1

9 18

. Vi

ral H

epati

tis (I

CD-1

0 B15

-19)

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

.....2

0 19

. Ye

llow

Feve

r (IC

D-10

A95

)......

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

......2

1 20

. Cl

uster

s (ou

tbrea

ks) o

f Gas

troint

estin

al Di

seas

e/Foo

dbor

ne D

iseas

e.....

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

.....2

2 20

.1.

Bacte

rial id

entifi

catio

n (hu

man s

pecim

ens)

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

..22

20.2.

Vi

ral id

entifi

catio

n.....

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

....23

20

.3.

Envir

onme

ntal S

ampli

ng: F

ood,

Milk

and W

ater T

estin

g.....

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

24

20.4.

Co

ntact

detai

ls for

gastr

ointes

tinal

disea

se ou

tbrea

ks....

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

........

.....2

5 Pr

efix

and

Dis

clai

mer

Th

is ma

terial

is in

tende

d for

use

by

healt

hcar

e pr

ofess

ionals

. Whil

e the

gre

atest

care

has

bee

n tak

en in

the

deve

lopme

nt of

the d

ocum

ent,

the N

ation

al De

partm

ent o

f Hea

lth a

nd th

e Na

tiona

l Insti

tute

for C

ommu

nicab

le Di

seas

es, o

f the

Nati

onal

Healt

h La

bora

tory S

ervic

e, do

not

acce

pt re

spon

sibilit

y for

any

er

rors

or o

miss

ions.

All h

ealth

care

pro

fessio

nals

shou

ld ex

ercis

e the

ir ow

n pr

ofess

ional

judge

ment

in co

nfirm

ing a

nd in

terpr

eting

the

findin

gs p

rese

nted

in the

guide

lines

. NI

CD-N

HLS

Labo

rator

y Han

dboo

k for

Diag

nosis

of P

riority

Com

munic

able

Dise

ases

, v2,

upda

ted 20

12/02

/02

2

NICD

-NHL

S La

bora

tory H

andb

ook f

or D

iagno

sis of

Prio

rity C

ommu

nicab

le Di

seas

es, v

2, up

dated

2012

/02/02

3

1. I

ntro

duct

ion

Usin

g th

is gu

ide:

This

guid

e se

rves

as a

refer

ence

for l

abor

atory

staff

and

healt

hcar

e wo

rkers

rega

rding

prio

rity c

ommu

nicab

le dis

ease

s. W

e pr

ovide

a

basic

guid

e re

gard

ing sp

ecim

en re

quire

ments

, tra

nspo

rtatio

n an

d sto

rage

requ

ireme

nts, a

nd a

vaila

ble te

sts fo

r a se

ries o

f prio

rity co

mmun

icable

dise

ases

. In

the e

vent

of oc

curre

nce

of a

spec

ific d

iseas

e, a

more

comp

rehe

nsive

guid

e wi

th sp

ecific

infor

matio

n on

that

comm

unica

ble d

iseas

e sh

ould

be co

nsult

ed.

Thes

e ar

e co

mmon

ly av

ailab

le on

the

NIC

D-NH

LS w

ebsit

e (w

ww.ni

cd.ac

.za/?p

age=

guide

lines

&id=

73)

and/o

r the

Dep

artm

ent

of He

alth

webs

ite

(www

.doh.g

ov.za

), an

d fur

ther a

dvice

shou

ld be

obta

ined

from

spec

ialist

s in

the fie

ld an

d/or t

he N

ICD-

NHLS

via

the d

octor

on

call (

NICD

Hotl

ine: 0

82-8

83-

9920

) if ne

eded

. Ca

se in

vest

igat

ion

form

s: D

iseas

e-sp

ecific

case

inve

stiga

tion f

orms

and t

est r

eque

st for

ms m

entio

ned

in thi

s doc

umen

t may

be

found

on

the N

ICD-

NHLS

we

bsite

(www

.nicd

.ac.za

/?pag

e=gu

idelin

es&i

d=73

).

Notif

icatio

ns: A

ll prio

rity c

ondit

ions

here

in ar

e ad

dition

ally

notifi

able

medic

al co

nditio

ns a

s pe

r the

Sou

th Af

rican

nati

onal

healt

h re

gulat

ions.

Healt

hcar

e wo

rkers

must

notify

all

susp

ected

cas

es to

the

relev

ant l

ocal

Depa

rtmen

t of H

ealth

auth

oritie

s, pr

ior to

labo

rator

y dia

gnos

is, to

ens

ure

a tim

ely a

nd

adeq

uate

publi

c hea

lth re

spon

se.

Gene

ral p

oint

s on

labo

rato

ry in

vest

igat

ions

: You

sho

uld a

lso a

lert t

he te

sting

labo

rator

y ab

out s

pecim

ens

they

will r

eceiv

e or

nee

d to

refer

. All t

ests

requ

ested

, and

clini

cal in

forma

tion,

shou

ld be

clea

rly st

ated

on re

ques

t for

ms to

pre

vent

incor

rect/

unne

cess

ary t

ests

being

per

forme

d. Fin

ally,

many

of t

he

prior

ity co

nditio

ns lis

ted h

ave

spec

ific sp

ecim

en su

bmiss

ion/ca

se in

vesti

gatio

n for

ms th

at mu

st be

comp

leted

and

acc

ompa

ny sp

ecim

ens.

Neve

rthele

ss, a

ll sp

ecim

ens s

hould

be ac

comp

anied

by th

e foll

owing

mini

mum

set o

f legib

le inf

orma

tion:

Pa

tient’

s full

name

, sur

name

, age

and g

ende

r;

Name

and c

ontac

t num

bers

of the

atten

ding h

ealth

wor

ker,

hosp

ital n

ame a

nd w

ard;

Na

me an

d con

tact n

umbe

rs (in

cl. ce

ll pho

ne) o

f key

inve

stiga

tors (

to fac

ilitate

comm

unica

tion o

f res

ults a

nd re

spon

se);

Clini

cal fe

ature

s and

relev

ant h

istor

y (e.g

. date

of ill

ness

onse

t, tra

vel, i

nsec

t bite

s, etc

.);

Sp

ecim

en ty

pe; a

nd,

A

clear

test

requ

est.

Some

prac

tical

advic

e for

spec

imen

s refe

rred t

o the

NIC

D-NH

LS:

Th

e NIC

D do

es no

t hav

e a sp

ecim

en co

llecti

on se

rvice

, but

serve

s as a

refer

ral la

bora

tory.

Inf

orm

the sp

ecific

NIC

D lab

orato

ry if y

ou ar

e sen

ding a

n urg

ent s

pecim

en fo

r tes

ting o

f a pr

iority

comm

unica

ble di

seas

e.

Use

a re

liable

cou

rier f

or u

rgen

t spe

cimen

s. Re

cord

the

wayb

ill/tra

cking

num

ber a

nd c

ommu

nicate

this

to the

app

ropr

iate

labor

atory

for tr

ackin

g pu

rpos

es (c

ontac

t deta

ils su

pplie

d in t

his do

cume

nt).

Af

ter-h

ours

spec

imen

s mus

t be

left a

t gate

secu

rity, N

OT a

t any

othe

r loc

ation

insid

e the

comp

lex. C

ourie

rs wi

ll not

be p

ermi

tted

onto

the ca

mpus

be

fore 7

h30 a

nd af

ter 16

h00 o

n wee

kday

s, an

d all h

ours

over

wee

kend

s/pub

lic ho

liday

s. Pr

oced

ures

are i

n plac

e to k

eep t

he co

ld ch

ain an

d rec

ord

the ch

ain of

custo

dy of

the s

pecim

ens a

fter r

eceip

t at th

e main

gate.

2. A

cute

Fla

ccid

Par

alys

is o

r Pol

io (I

CD

-10

A80

) In

stru

ctio

ns fo

r Hea

lthca

re W

orke

rs:

Path

ogen

, clin

ical s

ympt

oms &

co

mm

ents

Sa

mpl

e col

lectio

n Te

sts t

o re

ques

t Se

nd to

Fo

rms t

o co

mpl

ete

Polio

virus

– Ac

ute fla

ccid

para

lysis

(AFP

) or s

uspe

cted p

olio

Two s

tools

colle

cted 2

4-48

hour

s apa

rt an

d wi

thin 1

4 day

s of o

nset

of pa

ralys

is. W

here

stoo

ls ca

nnot

be ob

taine

d, a r

ectal

swab

mus

t be

subm

itted f

or te

sting

. See

App

endix

1 for

furth

er

detai

ls.

AFP

or P

olio

NICD

Rec

eiving

Offic

e 1 M

odde

rfonte

in Rd

., San

dring

ham,

Ga

uteng

, 219

2 Inf

orm

NICD

Rec

eiving

Offic

e prio

r to

send

ing to

ensu

re co

rrect

samp

le tra

nspo

rt an

d tra

cking

: 01

1 386

6404

/631

4 /64

66

AFP

case

inv

estig

ation

form

Labo

rato

ry te

st in

form

atio

n:

Avail

able

test

s Sp

ecial

Inst

ruct

ions

Tu

rn-a

roun

d tim

e Te

stin

g lab

orat

ory

Viru

s Iso

lation

Ma

inten

ance

of co

ld ch

ain is

reco

mmen

ded f

rom

colle

ction

to re

ceipt

at N

ICD.

See

the c

ase

inves

tigati

on fo

rm an

d spe

cimen

colle

ction

guide

for f

urthe

r deta

ils.

14 da

ys

Enter

oviru

s Sec

tion,

Vira

l Diag

nosti

c Unit

, NI

CD-N

HLS

011 3

86 64

21/2

NICD

-NHL

S La

bora

tory H

andb

ook f

or D

iagno

sis of

Prio

rity C

ommu

nicab

le Di

seas

es, v

2, up

dated

2012

/02/02

4

3. A

nthr

ax (I

CD

-10

A22

) In

stru

ctio

ns fo

r Hea

lthca

re W

orke

rs:

In th

e eve

nt o

f a su

spec

ted

delib

erat

e ant

hrax

expo

sure

(bio

terro

rism

or ‘

white

pow

der’

incid

ent):

Move

away

and d

o not

attem

pt to

colle

ct or

send

powd

er or

othe

r sus

piciou

s mate

rial to

the l

abor

atory.

Imme

diatel

y rev

iew th

e NIC

D-NH

LS H

ealth

care

Wor

kers

Hand

book

on B

ioter

roris

m Se

ction

5.1 f

or de

tails

on th

e req

uired

resp

onse

. In

the

case

of s

uspe

cted

clin

ical a

nthr

ax in

fect

ions

: hum

an s

pecim

ens

shou

ld be

sen

t to

the S

pecia

l Bac

terial

Path

ogen

s Re

feren

ce U

nit.

Plea

se

note:

SBP

RU m

ust b

e noti

fied t

hat s

pecim

ens a

re be

ing se

nt.

Path

ogen

, clin

ical

sym

ptom

s &

com

men

ts

Sam

ple c

ollec

tion

Test

s to

requ

est

Send

to

Form

s to

com

plet

e

Bacil

lus a

nthr

acis

(ant

hax)

De

pend

ing on

site

affec

ted. S

afety

prec

autio

ns sh

ould

be

taken

whe

n han

dling

all s

ample

s.

1. Cu

taneo

us

anthr

ax

Vesic

ular f

luid f

rom

prev

iously

unop

ened

vesic

le or

skin

fluid

from

unde

r edg

e of e

scha

r sho

uld be

obtai

ned;

subm

it 2x

swab

s in b

acter

ial tr

ansp

ort m

edium

e.g.

Cary-

Blair

. Ma

ke sm

ears

on sl

ides t

o sub

mit a

t sam

e tim

e.

Anthr

ax: m

icros

copy

and c

ultur

e

Sputu

m / g

astric

was

hings

An

thrax

: micr

osco

py an

d cult

ure

Bloo

d for

cultu

re

Anthr

ax

2. Inh

alatio

nal

Anthr

ax

Bloo

d for

sero

logy (

paire

d ser

um ta

ken 2

-3 w

eeks

apar

t) An

thrax

sero

logy

Bloo

d for

cultu

re

Anthr

ax

3. Ga

stro-

intes

tinal

anthr

ax

Bloo

d for

sero

logy (

paire

d ser

um ta

ken 2

-3 w

eeks

apar

t) An

thrax

sero

logy

Bloo

d for

cultu

re

Anthr

ax

Bloo

d for

sero

logy (

paire

d ser

um ta

ken 2

-3 w

eeks

apar

t) An

thrax

sero

logy

4. An

thrax

me

ningit

is CS

F An

thrax

: micr

osco

py an

d cult

ure

Spec

ial B

acter

ial

Patho

gens

Refe

renc

e Un

it (SB

PRU)

, NI

CD-N

HLS

1 Mod

derfo

ntein

Rd.,

Sand

ringh

am, G

auten

g, 21

92

**Lab

el ou

tsid

e of b

ox

with

“Do

not o

pen.

Su

spec

ted

Anth

rax.

SBPR

U m

ust b

e no

tified

that

spec

imen

s are

be

ing se

nt St

anda

rd N

HLS

spec

imen

su

bmiss

ion fo

rm

Labo

rato

ry te

st in

form

atio

n:

Avail

able

test

s Sp

ecial

Inst

ruct

ions

Tu

rn-a

roun

d tim

e Te

stin

g lab

orat

ory

Anthr

ax -

ELIS

A An

thrax

cultu

re an

d con

firmati

on

5 day

s

Anthr

ax P

CR

SBPR

U m

ust b

e noti

fied

that s

pecim

ens a

re be

ing

sent.

3 d

ays

Spec

ial B

acter

ial P

athog

ens R

efere

nce U

nit, N

ICD

011 5

55 03

06

011 5

55 03

31

NICD

-NHL

S La

bora

tory H

andb

ook f

or D

iagno

sis of

Prio

rity C

ommu

nicab

le Di

seas

es, v

2, up

dated

2012

/02/02

5

4. B

otul

ism

(IC

D-1

0 A

05.1

/ A

48.5

) In

stru

ctio

ns fo

r Hea

lthca

re W

orke

rs:

Pa

thog

en, c

linica

l sy

mpt

oms &

co

mm

ents

Sam

ple c

ollec

tion

Test

s to

requ

est

Send

to

Form

s to

com

plet

e

Clott

ed bl

ood (

20 to

30 m

l)

Seru

m (1

0 to 1

5 ml)

Stoo

l (25 t

o 50 g

)

Gastr

ic wa

shing

Vo

mitus

Clos

tridi

um b

otul

inum

(b

otul

ism)

Susp

ected

food

Botul

inum

inves

tigati

on: a

nti-to

xin as

say,

cultu

re an

d con

firmati

on

Spec

ial B

acter

ial

Patho

gens

Refe

renc

e Un

it (SB

PRU)

, NI

CD-N

HLS,

1 M

odde

rfonte

in Rd

., Sa

ndrin

gham

, Ga

uteng

, 219

2

Conta

ct SB

PRU

or

NICD

Hotl

ine

imme

diatel

y for

ad

vice p

rior t

o su

bmitti

ng an

y sp

ecim

ens

Stan

dard

NHL

S sp

ecim

en su

bmiss

ion

form

In th

e eve

nt o

f a su

spec

ted

delib

erat

e exp

osur

e (bi

oter

roris

t atta

ck):

Cons

ult th

e NIC

D-NH

LS H

ealth

care

Wor

kers

Hand

book

on B

ioter

roris

m for

de

tails

on th

e req

uired

resp

onse

. La

bora

tory

test

info

rmat

ion:

Av

ailab

le te

sts

Spec

ial In

stru

ctio

ns

Turn

-aro

und

time

Test

ing

labor

ator

y Bo

tulinu

m – A

nti-to

xin as

say

Botul

inum

– Cult

ure a

nd co

nfirm

ation

Bo

tulinu

m – P

CR

SBPR

U m

ust b

e noti

fied t

hat

spec

imen

s are

being

sent.

Tr

ansp

ort s

pecim

ens a

t 2-8C

Up to

4 we

eks

Spec

ial B

acter

ial P

athog

ens R

efere

nce U

nit, N

ICD-

NHLS

, 1 M

odde

rfonte

in Rd

., San

dring

ham,

Gau

teng,

2192

01

1 555

0306

01

1 555

0331

NICD

-NHL

S La

bora

tory H

andb

ook f

or D

iagno

sis of

Prio

rity C

ommu

nicab

le Di

seas

es, v

2, up

dated

2012

/02/02

6

5. C

hole

ra (I

CD

-10

A05

.8)

Inst

ruct

ions

for H

ealth

care

Wor

kers

: Pa

thog

en, c

linica

l sy

mpt

oms &

co

mm

ents

Sam

ple c

ollec

tion

Test

s to

requ

est

Send

to

Form

s to

com

plet

e

Vibr

io ch

oler

ae O

1 Ac

ute w

atery

diarrh

oea,

with

or w

ithou

t sign

s of

dehy

drati

on

Stoo

l spe

cimen

, or r

ectal

swab

if sto

ol ca

nnot

be ob

taine

d. If s

tool s

pecim

en ca

nnot

be pr

oces

sed w

ithin

2 hou

rs: us

e a co

tton-

tippe

d swa

b to

samp

le sto

ol sp

ecim

en. P

lace s

wab w

ith sa

mpled

stoo

l in C

ary-B

lair t

rans

port

mediu

m. S

ubmi

t both

the i

nitial

conta

iner w

ith st

ool a

nd sw

ab in

tran

spor

t med

ium to

the

lab.

Tran

spor

t refr

igera

ted, d

o NOT

free

ze.

See s

pecim

en co

llecti

on gu

ide fo

r sus

pecte

d cho

lera c

ases

(App

endix

2)

MCS

includ

ing

chole

ra

Loca

l NHL

S lab

orato

ry Co

ntact

NICD

Hotl

ine

to fac

ilitate

labo

rator

y tes

ting.

St

anda

rd N

HLS

spec

imen

subm

ission

for

m

Labo

rato

ry te

st in

form

atio

n:

Avail

able

test

s Sp

ecial

Inst

ruct

ions

Tu

rn-

arou

nd

time

Test

ing

labor

ator

y

Prim

ary i

denti

ficati

on, s

eroty

ping a

nd an

timicr

obial

susc

eptib

ility

Conta

ct NI

CD H

otline

to fa

cilita

te lab

orato

ry tes

ting.

Liaise

with

loc

al NH

LS

Spec

imen

s sho

uld be

refer

red t

o loc

al/re

giona

l NH

LS la

bora

tory f

or pr

imar

y ide

ntific

ation

. Iso

lates

to be

refer

red t

o Ente

ric D

iseas

es

Refer

ence

Unit

(EDR

U), N

ICD-

NHLS

. Fu

rther

iden

tifica

tion a

nd te

sts of

fered

at N

ICD:

Exten

ded s

eroty

ping

An

timicr

obial

susc

eptib

ility t

estin

g

Scre

ening

for e

xtend

ed sp

ectru

m be

ta-lac

tamas

e (ES

BL)

Ch

olera

enter

otoxin

detec

tion v

ia PC

R

Bioty

ping v

ia PC

R

DNA

finge

rprin

ting o

f stra

ins vi

a PFG

E an

alyse

s

Cultu

re is

olates

sent

from

other

lab

orato

ries:

Isolat

es su

bcult

ured

on

to Do

rset tr

ansp

ort m

edium

, inc

ubate

d at 3

7 deg

rees

over

night

at lab

orato

ry of

origi

n, pr

ior to

su

bmiss

ion to

EDR

U. D

orse

t slop

e to

be ke

pt at

room

temp

eratu

re up

on

rece

ipt at

NIC

D.

1-4 d

ays

Enter

ic Di

seas

es R

efere

nce U

nit, N

ICD-

NHLS

01

1 555

0333

01

1 555

0334

NICD

-NHL

S La

bora

tory H

andb

ook f

or D

iagno

sis of

Prio

rity C

ommu

nicab

le Di

seas

es, v

2, up

dated

2012

/02/02

7

6. D

ipht

heria

(IC

D-1

0 A

36)

Inst

ruct

ions

for H

ealth

care

Wor

kers

: Pa

thog

en, c

linica

l sym

ptom

s & co

mm

ents

Sa

mpl

e col

lectio

n Te

sts t

o re

ques

t Se

nd to

Fo

rms t

o co

mpl

ete

Cultu

re fo

r dip

hther

ia

Loca

l labo

rator

y for

cultu

re

Thro

at sw

abs:

Rub

vigo

rous

ly ov

er

any m

embr

ane,

white

spots

, or

inflam

ed ar

eas;

apply

sligh

t pre

ssur

e wi

th ro

tating

mov

emen

t. If m

embr

ane

is pr

esen

t, lift

the ed

ge an

d swa

b be

neath

it.

Naso

phar

ynge

al sp

ecim

ens:

gentl

y int

rodu

ce th

e swa

b alon

g the

floor

of

the na

sal c

avity

, und

er th

e midd

le tur

binate

until

the ph

aryn

geal

wall i

s re

ache

d.

Cory

neba

cter

ium

dip

hthe

riae

and

rare

ly Co

ryne

bact

eriu

m u

lcera

ns

(Dip

hthe

ria)

Loca

l sym

ptoms

as a

resu

lt of a

non-

invas

ive re

spira

tory t

ract

infec

tion:

inclu

de: a

toug

h gre

y to w

hite a

dher

ent m

embr

ane

(pse

udom

embr

ane)

on th

e ton

sils,

phar

ynx,

and/o

r nas

al ca

vity s

ore t

hroa

t, pro

blems

swall

owing

, bloo

dy w

atery

drain

age f

rom

the no

se, d

rooli

ng, h

oarse

ness

, cro

up-lik

e co

ugh,

strido

r, dif

ficult

y bre

athing

or ta

chyp

noea

, enla

rged

lym

ph no

des i

n the

neck

, “Bu

ll nec

k” ap

pear

ance

due t

o se

vere

cervi

cal ly

mpha

deno

pathy

and o

edem

a of th

e ante

rior

cervi

cal ti

ssue

s.

Syste

mic s

ympto

ms du

e to s

econ

dary

disse

mina

tion o

f the

toxin

throu

gh th

e bloo

dstre

am to

othe

r org

ans s

uch a

s the

he

art, k

idney

s, an

d ner

vous

syste

m. M

yoca

rditis

is th

e mos

t co

mmon

poten

tially

life-

threa

tening

comp

licati

on.

Skin

lesio

ns: c

lean l

esion

s with

ste

rile no

rmal

salin

e and

remo

ve

cruste

d mate

rial; p

ress

the s

wab

firmly

into t

he le

sion.

Toxin

tes

ting

NHLS

Gre

en P

oint m

ay ac

cept

refer

red s

ample

s for

toxin

tes

ting,

depe

nding

on th

e av

ailab

ility o

f anti

toxin.

Con

tact

the la

bora

tory t

o mak

e en

quirie

s prio

r to s

endin

g any

sp

ecim

ens.

Ol

d City

Hos

pital

Comp

lex,

Portw

ood R

oad,

Gree

npoin

t, 80

00.

021-

417-

9328

02

1-41

7-93

44

Conta

ct NI

CD

Hotlin

e to

facilit

ate

labor

atory

testin

g. St

anda

rd N

HLS

spec

imen

su

bmiss

ion

form.

Labo

rato

ry te

st in

form

atio

n:

Avail

able

test

s Sp

ecial

Inst

ruct

ions

Tu

rn-a

roun

d tim

e Te

stin

g lab

orat

ory

Cultu

re

Loca

l To

xin

testin

g

Thro

at sw

abs a

re no

t rou

tinely

cultu

red s

o it is

impo

rtant

to inf

orm

the la

bora

tory t

hat d

iphthe

ria is

susp

ected

. Ob

serve

infec

tion p

reve

ntion

and c

ontro

l pro

tocols

whe

n coll

ectin

g and

hand

ling s

pecim

ens,

and s

end t

o the

lab

orato

ry im

media

tely.

If tra

nspo

rtatio

n is l

ikely

to be

delay

ed, c

onsid

er us

ing an

appr

opria

te tra

nspo

rt me

dium

such

as A

mie’s

gel m

edium

. If th

e tra

nsit t

ime w

ill ex

ceed

24 ho

urs,

the sw

ab sh

ould

be pr

eser

ved i

n a sp

ecial

pa

ck co

ntaini

ng a

desic

cant

such

as si

lica g

el.

Cons

ult

testin

g lab

orato

ry NH

LS G

reen

Poin

t Ol

d City

Hos

pital

Comp

lex, P

ortw

ood

Road

, Gre

enpo

int, 8

000.

02

1-41

7-93

28

021-

417-

9344

NICD

-NHL

S La

bora

tory H

andb

ook f

or D

iagno

sis of

Prio

rity C

ommu

nicab

le Di

seas

es, v

2, up

dated

2012

/02/02

8

7. L

egio

nello

sis

(ICD

-10

A48

.1)

Inst

ruct

ions

for h

ealth

care

wor

kers

: Pa

thog

en, c

linica

l sym

ptom

s & co

mm

ents

Sa

mpl

e col

lectio

n Te

sts t

o re

ques

t Se

nd to

Fo

rms t

o co

mpl

ete

Urine

Le

gione

lla ur

inary

antig

en te

st (re

comm

ende

d)

Legi

onne

lla p

neum

ophi

la (L

egio

nello

sis / L

egio

nnair

es’ D

iseas

e)

Flu-lik

e illn

ess,

follow

ed by

a dr

y cou

gh an

d fre

quen

tly

prog

ress

es to

pneu

monia

Bl

ood

Bl

ood c

ultur

e for

Le

gione

lla sp

p.

NH

LS In

fectio

n Con

trol

Servi

ces L

abor

atory

NH

LS G

roote

Sch

uur

or

NH

LS P

ublic

Hea

lth

Labo

rator

y KZN

Stan

dard

NHL

S sp

ecim

en

subm

ission

form

Co

ntact

testin

g lab

orato

ry pr

ior

to se

nding

spec

imen

s.

Wat

er te

stin

g fo

r Leg

ione

lla

(to be

done

by E

nviro

nmen

tal H

ealth

Pra

ctitio

ners

only)

W

ater a

s per

EHP

gu

idelin

es

Legio

nella

NH

LS In

fectio

n Con

trol

Servi

ces L

abor

atory

NHLS

-ICSL

Spe

cimen

su

bmiss

ion fo

rm

Labo

rato

ry te

st in

form

atio

n:

Avail

able

test

s Sp

ecial

inst

ruct

ions

Tu

rn-a

roun

d tim

e Te

stin

g lab

orat

ory

Legio

nella

urina

ry an

tigen

This

is a r

apid

test th

at de

tects

Legio

nella

antig

ens i

n urin

e, an

d has

very

good

sens

itivity

and s

pecif

icity.

This

is th

e rec

omme

nded

diag

nosti

c tes

t. W

ithin

a few

hour

s

Cultu

re

Colle

ct sp

utum,

or lo

wer r

espir

atory

tract

secre

tions

or bl

ood o

r pleu

ral

fluid

10-1

4 day

s

NHLS

Infec

tion C

ontro

l Ser

vices

Labo

rator

y W

its M

edica

l Sch

ool, L

evel

3, Ro

om 3T

09

7 Yor

k Roa

d, Pa

rktow

n Jo

hann

esbu

rg, 2

193

Tel: 0

11-4

89-8

579/8

0 NH

LS M

icrob

iolog

y Lab

orato

ry (C

18)

Groo

te Sc

huur

Hos

pital

Main

Road

, Obs

erva

tory,

Cape

Tow

n, 79

25

Tel: 0

21-4

04-4

129 /

5137

NH

LS P

ublic

Hea

lth La

bora

tory K

ZN

3rd F

loor,

149 P

rince

Stre

et, D

urba

n, 40

01.

Tel: 0

21-4

17-9

354 /

9355

W

ater t

estin

g /

envir

onme

ntal

studie

s

Vol: 1

000m

l, con

taine

r: cle

an/ne

w/ste

rile, tr

ansp

ort te

mp: R

T (if

deliv

ered

the

same

day),

rejec

ted af

ter: >

72 hr

s at R

T Lia

ise w

ith te

sting

lab

orato

ry NH

LS In

fectio

n Con

trol S

ervic

es La

bora

tory

Note

: Othe

r tes

ts su

ch as

sero

logy (

IFA)

and P

CR ar

e NOT

reco

mmen

ded a

s firs

t-line

diag

nosti

cs te

sts fo

r Leg

ionell

osis.

A si

ngle

posit

ive se

rolog

y res

ult do

es N

OT

confi

rm ac

tive L

egion

ella i

nfecti

on.

NICD

-NHL

S La

bora

tory H

andb

ook f

or D

iagno

sis of

Prio

rity C

ommu

nicab

le Di

seas

es, v

2, up

dated

2012

/02/02

9

8. M

easl

es (I

CD

-10

B05

) In

stru

ctio

ns fo

r Hea

lthca

re W

orke

rs:

Path

ogen

, clin

ical

sym

ptom

s &

com

men

ts

Sam

ple c

ollec

tion

Test

s to

requ

est

Send

to

Form

s to

com

plet

e

Meas

les

Bl

ood (

5ml c

lotted

or in

EDT

A tub

e)

PLUS

one

of t

he fo

llowi

ng:

Na

soph

aryn

geal/

thro

at sw

ab in

vira

l tran

spor

t med

ium (V

TM~3

ml),

OR

Urine

Re

comm

ende

d swa

bs: D

acro

n tip

and a

lumini

um or

plas

tic sh

aft or

Vi

rocu

lt floc

ked s

wabs

. Un

suita

ble sw

abs:

wood

en, c

otton

, calc

ium al

ginate

swab

s Sa

mples

shou

ld re

ach t

he la

bora

tory w

ithin

3 day

s of c

ollec

tion

Meas

les

Vira

l Diag

nosti

cs U

nit

(VDU

), NI

CD-N

HLS,

1 M

odde

rfonte

in Rd

., Sa

ndrin

gham

, Gau

teng,

2192

Meas

les C

ase

Inves

tigati

on F

orm

Labo

rato

ry te

st in

form

atio

n:

Avail

able

test

s Sp

ecial

Inst

ruct

ions

Tu

rn-a

roun

d tim

e Te

stin

g lab

orat

ory

Meas

les Ig

M an

d IgG

EI

A Tr

ansp

ort a

t 2-8

°C. M

ainten

ance

of co

ld ch

ain is

reco

mmen

ded

from

colle

ction

to re

ceipt

at N

ICD.

7 d

ays

Sero

logy,

VDU,

NIC

D-NH

LS

011 3

86 63

98/64

35

Meas

les P

CR an

d se

quen

cing t

o dete

rmine

ge

notyp

e (su

rveilla

nce)

Tran

spor

t at 2

-8°C

14

days

Sp

ecial

ized M

olecu

lar D

iagno

stics

Unit

: Me

asles

, NIC

D-NH

LS

011 3

86 63

43

Cell c

ultur

e (su

rveilla

nce)

Tr

ansp

ort a

t 4ºC

. Sam

ple sh

ould

reac

h lab

orato

ry wi

thin 7

2hrs.

1 m

onth

Viru

s Iso

lation

, VDU

-NHL

S

011 3

86 63

73

NICD

-NHL

S La

bora

tory H

andb

ook f

or D

iagno

sis of

Prio

rity C

ommu

nicab

le Di

seas

es, v

2, up

dated

2012

/02/02

10

9. P

ertu

ssis

(IC

D-1

0 A

37)

Inst

ruct

ions

for H

ealth

care

Wor

kers

: Pa

thog

en, c

linica

l sym

ptom

s & co

mm

ents

Sa

mpl

e co

llect

ion

Test

s to

requ

est

Send

to

Form

s to

com

plet

e Cu

lture

for

B. p

ertu

ssis

Loca

l NHL

S lab

orato

ry Bo

rdet

ella p

ertu

ssis

or B

. pap

aper

tuss

is (p

ertu

ssis)

Di

seas

e typ

ically

man

ifests

in 3

stage

s: a c

atarrh

al sta

ge w

ith si

gns a

nd sy

mptom

s of a

n URT

I, the

clas

sical

paro

xysm

al sta

ge w

ith a

coug

h las

ting >

2 wee

ks, a

nd a

conv

alesc

ent s

tage.

In the

pa

roxy

smal

stage

, chil

dren

may

pres

ent w

ith pa

roxy

sms o

f sev

ere c

ough

ing, in

spira

tory

whoo

ping,

and p

osttu

sive v

omitin

g. Inf

ants

below

6 mo

nths-o

ld, am

ong w

hom

seve

re m

orbid

ity

& mo

rtality

risks

are h

ighes

t, pre

sent

atypic

ally w

ith ep

isode

s of a

pnoe

a, cy

anos

is an

d gag

ging.

Adult

s and

adole

scen

ts, w

ho co

nstitu

te an

impo

rtant

sour

ce of

infec

tion f

or no

n-im

mune

infan

ts,

also p

rese

nt wi

th aty

pical

clinic

al ma

nifes

tation

s suc

h as m

ild LR

TI w

ith pr

olong

ed pa

roxy

smal

coug

hing.

Addit

ionall

y, pe

rtuss

is sh

ould

be co

nside

red i

n per

sons

of al

l age

s who

are i

n con

tact

with

a kno

wn pe

rtuss

is ca

se.

Dupl

icate

po

ster

ior

naso

phar

ynge

al sw

abs o

r as

pira

tes

PCR

for

B. p

ertu

ssis

NHLS

Infec

tion

Contr

ol Se

rvice

s La

bora

tory

or

NHLS

Gro

ote

Schu

ur

Stan

dard

NH

LS

spec

imen

su

bmiss

ion

form

Labo

rato

ry te

st in

form

atio

n:

Avail

able

test

s Sp

ecial

Inst

ruct

ions

Tu

rn-

arou

nd ti

me

Test

ing

labor

ator

y

Cultu

re

Loca

l NHL

S La

bora

tory

PCR

Us

e Dac

ron o

r Ray

on sw

ab. D

o not

use c

alcium

algin

ate sw

abs o

r cott

on sw

abs a

s the

se

inhibi

t PCR

reac

tions

and g

rowt

h of B

. per

tuss

is for

cultu

re.

Th

e mod

e and

timing

of sp

ecim

en co

llecti

on, a

s well

as ra

pid tr

ansp

ort to

the l

abor

atory,

are

impo

rtant

for op

timal

yield

of cu

lture

.

Gentl

y pas

s the

swab

thro

ugh t

he no

stril t

o the

poste

rior n

asop

haryn

x. Do

not fo

rce th

e sw

ab; r

esist

ance

will

be fe

lt whe

n the

poste

rior n

asop

haryn

x is r

each

ed. R

otate

the sw

ab

and l

eave

in pl

ace f

or 30

seco

nds o

r unti

l the p

atien

t cou

ghs.

Inocu

late t

he fir

st sw

ab im

media

tely o

nto th

e sur

face o

f Reg

an-L

owe c

harco

al ag

ar (o

btain

from

local

labor

atory)

at pa

tients

beds

ide.

Re

peat

the pr

oced

ure t

hrou

gh th

e sec

ond n

ostril

. Sen

d swa

b in u

niver

sal c

ontai

ner f

or P

CR.

Liaise

with

tes

ting

labor

atory

NHLS

Infec

tion C

ontro

l Ser

vices

Lab

Wits

Med

ical S

choo

l, Lev

el 3,

Room

3T09

7 Y

ork R

oad,

Parkt

own

Joha

nnes

burg

, 219

3 Te

l: 011

-489

-857

9/80

NHLS

Micr

obiol

ogy L

abor

atory

(C18

) Gr

oote

Schu

ur H

ospit

al, M

ain R

oad,

Obse

rvator

y, Ca

pe T

own,

7925

Te

l: 021

-404

-412

9 / 51

37

Notes

: o

PC

R is

the m

ost s

ensit

ive a

nd, t

here

fore,

reco

mmen

ded

for ro

utine

clin

ical d

iagno

sis. P

CR m

ay re

main

posit

ive in

late

disea

se a

nd a

fter r

eceip

t of a

ntibio

tic

treatm

ent. R

esult

s mus

t be i

nterp

reted

in co

njunc

tion w

ith cl

inica

l featu

res o

f dise

ase.

o

Cu

lture

is th

e go

ld sta

ndar

d, ho

weve

r sen

sitivi

ty is

varia

ble –

high

est i

n the

first

2 w

eeks

(cata

rrhal

phas

e) a

nd is

redu

ced

in lat

er s

tages

and

follo

wing

anti

biotic

tre

atmen

t. o

Se

rolo

gy a

nd d

irect

fluo

resc

ents

ant

ibod

y te

sts

are

not r

ecom

mend

ed fo

r rou

tine

diagn

osis.

The

se te

sts h

ave

poor

sen

sitivi

ty an

d sp

ecific

ity (g

iving

false

ne

gativ

es an

d fals

e pos

itives

) and

no lo

cal c

ut-off

s are

avail

able

to int

erpr

et se

rolog

y res

ults.

NI

CD-N

HLS

Labo

rator

y Han

dboo

k for

Diag

nosis

of P

riority

Com

munic

able

Dise

ases

, v2,

upda

ted 20

12/02

/02

11

10. M

enin

goco

ccal

Dis

ease

(IC

D-1

0 A

39)

Inst

ruct

ions

for H

ealth

care

Wor

kers

: Pa

thog

en, c

linica

l sy

mpt

oms &

com

men

ts

Sam

ple c

ollec

tion

Test

s to

requ

est

Send

to

Form

s to

com

plet

e

Neiss

eria

men

ingi

tidis

Depe

nden

t on c

linica

l pre

senta

tion:

CSF

MCS,

Latex

agglu

tinati

on (w

here

ind

icated

) 1.

Menin

gitis

Bloo

d Bl

ood c

ultur

e 2.

Septi

caem

ia Bl

ood

Bloo

d cult

ure

Bloo

d Bl

ood c

ultur

e 3.

Foca

l infec

tions

(e.g.

se

ptic a

rthriti

s, pn

eumo

nia)

Othe

r spe

cimen

s (e.g

. syn

ovial

fluid,

pe

ritone

al / p

erica

rdial

fluid,

sputu

m)

MCS

Bloo

d Bl

ood c

ultur

e 4.

Conju

nctiv

itis

Conju

nctiv

al sw

ab

MCS

for su

spec

ted m

ening

ococ

cus

Bloo

d Bl

ood c

ultur

e 5.

Petec

hial ra

sh

Skin

lesion

biop

sy (N

ote: th

is is

not a

se

nsitiv

e tes

t but

may b

e help

ful if

posit

ive)

Gram

stain

and c

ultur

e

Loca

l NHL

S lab

orato

ry.

Spec

imen

s may

be

refer

red t

o a re

giona

l NH

LS la

bora

tory

depe

nding

on

capa

city a

t the l

ocal

level.

Stan

dard

NHL

S sp

ecim

en su

bmiss

ion

form

Labo

rato

ry te

st in

form

atio

n:

Avail

able

test

s Sp

ecial

Inst

ruct

ions

Tu

rn-a

roun

d tim

e Te

stin

g lab

orat

ory

Prim

ary i

denti

ficati

on of

Neis

seria

men

ingitid

is, la

tex ag

glutin

ation

, sus

cepti

bility

tes

ting

Refrig

erati

on pr

eferre

d but

not e

ssen

tial.

Liaise

with

loc

al lab

Lo

cal N

HLS

labor

atory

Furth

er id

entifi

catio

n of N

eisse

ria m

ening

itidis

-isola

tes su

bmitte

d to N

ICD

for

natio

nal s

urve

illanc

e (GE

RMS-

SA):

2 day

s

Antim

icrob

ial su

scep

tibilit

y tes

ting (

disc a

nd m

inimu

m inh

ibitor

y con

centr

ation

- MI

C) -

as pa

rt of

surve

illanc

e or t

o con

firm re

sults

2 d

ays

Pulse

d-fie

ld ge

l elec

troph

ores

is (P

FGE)

- Ou

tbrea

k inv

estig

ation

/ mole

cular

ep

idemi

ology

1 w

eek

Multil

ocus

sequ

ence

typin

g (ML

ST) -

Mole

cular

char

acter

izatio

n 3 d

ays

Sero

typing

/sero

grou

ping (

slide

agglu

tinati

on) -

routi

ne su

rveilla

nce,

or to

asse

ss

vacc

ine re

spon

se, o

r guid

e men

ingoc

occa

l vac

cine u

se

Isolat

es on

Dor

set tr

ansp

ort m

edium

inoc

ulated

as

per N

IC01

84. N

o refr

igera

tion r

equir

ed. D

o not

batch

, as i

solat

es w

ill los

e viab

ility.

2 day

s

Polym

eras

e cha

in re

actio

n (PC

R) fo

r iden

tifica

tion -

cultu

re-n

egati

ve sp

ecim

ens

1 day

PC

R for

sero

typing

/sero

grou

ping -

cultu

re-n

egati

ve sp

ecim

ens

Who

le blo

od, c

lotted

bloo

d (se

rum)

, unc

lotted

ED

TA bl

ood,

CSF.

Refr

igera

tion p

refer

red b

ut no

t es

senti

al 1 d

ay

RMPR

U, N

ICD-

NHLS

01

1 555

0315

01

1 555

0317

NICD

-NHL

S La

bora

tory H

andb

ook f

or D

iagno

sis of

Prio

rity C

ommu

nicab

le Di

seas

es, v

2, up

dated

2012

/02/02

12

11. P

lagu

e (IC

D-1

0 A

20)

Inst

ruct

ions

for H

ealth

care

Wor

kers

: Pa

thog

en, c

linica

l sy

mpt

oms &

com

men

ts

Sam

ple c

ollec

tion

Test

s to

requ

est

Send

to

Form

s to

com

plet

e Ye

rsin

ia pe

stis

(plag

ue)

Depe

nden

t on c

linica

l pre

senta

tion.

Safet

y pre

cauti

ons s

hould

be ta

ken w

hen h

andli

ng sa

mples

. Bu

bo as

pirate

plus

2x sw

abs i

n bac

terial

tra

nspo

rt me

dia (e

.g. C

ary-B

lair).

Abs

orb a

few

drop

s of s

ample

on a

sterile

swab

.

Plag

ue in

vesti

gatio

n ( m

icros

copy

, cult

ure a

nd

confi

rmati

on)

1. B

ubon

ic pla

gue

Bloo

d for

sero

logy (

paire

d ser

um ta

ken 2

-3

week

s apa

rt)

Plag

ue se

rolog

y

Bloo

d cult

ure b

ottle

Plag

ue in

vesti

gatio

n ( m

icros

copy

, cult

ure a

nd

confi

rmati

on)

2. Se

ptica

emic

plagu

e

Bloo

d for

sero

logy (

paire

d ser

um ta

ken 2

-3

week

s apa

rt)

Plag

ue se

rolog

y

Sputu

m plu

s 2x s

wabs

in ba

cteria

l tran

spor

t me

dia (e

.g. C

ary-B

lair)

Plag

ue in

vesti

gatio

n ( m

icros

copy

, cult

ure a

nd

confi

rmati

on)

Bloo

d cult

ure b

ottle

Plag

ue in

vesti

gatio

n ( m

icros

copy

, cult

ure a

nd

confi

rmati

on)

3. Pn

eumo

nic pl

ague

Bloo

d for

sero

logy (

paire

d ser

um ta

ken 2

-3

week

s apa

rt)

Plag

ue se

rolog

y

Bloo

d for

cultu

re

Cultu

re fo

r plag

ue

Bloo

d for

sero

logy

Plag

ue se

rolog

y 4.

Othe

r man

ifesta

tions

(e

.g. m

ening

itis,

phar

yngit

is)

CSF,

phar

ynge

al sw

ab, e

tc.

Plag

ue in

vesti

gatio

n ( m

icros

copy

, cult

ure a

nd

confi

rmati

on)

Spec

ial B

acter

ial

Patho

gens

Re

feren

ce U

nit

(SPB

RU),

NI

CD-N

HLS,

1 M

odde

rfonte

in Rd

, San

dring

ham,

Jo

hann

esbu

rg,

2192

* L

abel

outsi

de of

bo

x with

“Do n

ot op

en. S

uspe

cted

Plag

ue”

Conta

ct SB

PRU

or

NICD

Hotl

ine

imme

diatel

y for

ad

vice p

rior t

o su

bmitti

ng an

y sp

ecim

ens.

Stan

dard

NHL

S sp

ecim

en

subm

ission

form

.

In th

e eve

nt o

f a su

spec

ted

delib

erat

e exp

osur

e (bi

oter

roris

t atta

ck):

Cons

ult th

e NIC

D-NH

LS H

ealth

care

Wor

kers

Hand

book

on B

ioter

roris

m for

de

tails

on th

e req

uired

resp

onse

.

La

bora

tory

test

info

rmat

ion:

Av

ailab

le te

sts

Spec

ial In

stru

ctio

ns

Turn

-aro

und

time

Test

ing

labor

ator

y Pl

ague

- EL

ISA

2 day

s Pl

ague

- cu

lture

and c

onfirm

ation

5 d

ays

Plag

ue -

DFA

2 day

s Su

rveilla

nce p

lague

- EL

ISA

SBPR

U m

ust b

e noti

fied

that s

pecim

ens a

re be

ing

sent.

21

days

Spec

ial B

acter

ial P

athog

ens R

efere

nce U

nit, N

ICD-

NHLS

, 1 M

odde

rfonte

in Rd

., San

dring

ham,

Gau

teng,

2192

01

1 555

0306

01

1 555

0331

NICD

-NHL

S La

bora

tory H

andb

ook f

or D

iagno

sis of

Prio

rity C

ommu

nicab

le Di

seas

es, v

2, up

dated

2012

/02/02

13

12. R

abie

s di

seas

e in

hum

ans

(ICD

-10

A82

) In

stru

ctio

ns fo

r Hea

lthca

re W

orke

rs:

Path

ogen

, clin

ical s

ympt

oms &

com

men

ts

Sam

ple c

ollec

tion

Test

s to

requ

est

Send

to

Form

s to

com

plet

e

Saliv

a (an

te-mo

rtem,

mos

t sen

sitive

) CS

F (n

ot pr

eferre

d but

co-su

bmit w

ith

other

spec

imen

s if a

vaila

ble)

Nuch

al bio

psy (

ante-

or po

st-mo

rtem)

Br

ain sp

ecim

en (p

ost-m

ortem

)

Rabi

es

Fu

rious

rabi

es: h

alluc

inatio

ns, a

gitati

on,

hydr

opho

bia, b

izarre

beha

viour

, enc

epha

litis

Pa

ralyt

ic ra

bies

: asc

endin

g flac

cid pa

ralys

is A

histor

y of a

nimal

expo

sure

may

prov

ide in

sight.

Ac

cura

te da

tes of

expo

sure

, ons

et an

d pro

gres

sion

of dis

ease

are v

ital in

our in

vesti

gatio

n.

Bloo

d/ser

um fo

r ser

ology

(not

sens

itive

but m

ay co

-subm

it with

othe

r spe

cimen

s)

Rabie

s Co

ntact

NICD

Hotl

ine

imme

diatel

y for

advic

e prio

r to

subm

itting

spec

imen

s.

Refer

to th

e Rab

ies S

pecim

en

Colle

ction

Guid

e for

infor

matio

n an

d com

plete

the N

ICD

Susp

ect

Rabie

s Cas

e Hist

ory F

orm.

Po

st-va

ccina

tion a

ntibo

dy tit

re m

easu

reme

nt Bl

ood/s

erum

for s

erolo

gy

Rabie

s an

tibod

y

Spec

ial P

athog

ens

Unit,

NICD

-NHL

S,

1 Mod

derfo

ntein

Rd, S

andr

ingha

m,

Gaute

ng, 2

192

Stan

dard

NHL

S sp

ecim

en

subm

ission

form

for c

linica

l sp

ecim

ens.

La

bora

tory

test

info

rmat

ion:

Av

ailab

le te

sts

Spec

ial In

stru

ctio

ns

Turn

-aro

und

time

Test

ing

labor

ator

y Se

rolog

y: flu

ores

cent

antib

ody t

est, p

ost-v

accin

ation

an

tibod

y titre

deter

mina

tion

24-4

8 hou

rs

Sero

logy:

fluor

esce

nt an

tibod

y tes

t, clin

ical c

ases

Bloo

d tub

es se

aled i

n plas

tic ba

gs, a

nd la

belle

d bioh

azar

dous

. Stor

e an

d tra

nspo

rt at

4 °C

(or o

n ice

pack

s).

24-4

8 hou

rs Vi

rus i

solat

ion: a

nte-m

ortem

3 w

eeks

PC

R: an

te-mo

rtem

At le

ast 2

00 ul

in pl

astic

scre

w top

conta

iners,

pack

aged

in se

cond

ary

conta

iner;

label

as bi

ohaz

ardo

us an

d for

rabie

s inv

estig

ation

. Add

ress

to

Spec

ial P

athog

ens L

abor

atory;

conta

ct lab

orato

ry, an

d stor

e and

tra

nspo

rt at

4 °C

(or o

n ice

pack

s).

24-4

8 hou

rs

Viru

s iso

lation

: pos

t-mor

tem

3 wee

ks

PCR:

post-

morte

m (o

nly pe

rform

ed if

antig

en de

tectio

n is

not c

onclu

sive)

24

-48 h

ours

Antig

en de

tectio

n (flu

ores

cent

antib

ody t

est):

post-

morte

m

Who

le, ha

lf or c

ubes

of re

pres

entat

ive re

gions

of br

ain su

bmitte

d in 5

0 %

glyc

erol-

salin

e in p

lastic

scre

w top

conta

iners.

Labe

l as

bioha

zard

ous,

store

and t

rans

port

at 4 °

C (o

r on i

ce pa

cks).

24

-48 h

ours

Spec

ial

Patho

gens

Unit

, NI

CD-N

HLS

011 3

86

6339

/6376

Note:

Tes

ting o

f a fu

ll rep

ertoi

re of

spec

imen

s (i.e

. sali

va, C

SF, n

ucha

l biop

sy, p

ost-m

ortem

brain

biop

sy, b

lood/s

erum

) is re

comm

ende

d to c

onclu

sively

co

nfirm

or ru

le ou

t rab

ies. T

estin

g of r

epea

t sali

va sp

ecim

ens i

s also

requ

ired a

s viru

s is s

hed i

nterm

ittentl

y in t

his bo

dy flu

id. S

erolo

gy is

gene

rally

not v

ery

sens

itive f

or di

agno

stic u

se.

NICD

-NHL

S La

bora

tory H

andb

ook f

or D

iagno

sis of

Prio

rity C

ommu

nicab

le Di

seas

es, v

2, up

dated

2012

/02/02

14

13. R

ift V

alle

y fe

ver (

ICD

-10

A92

.4)

Inst

ruct

ions

for H

ealth

care

Wor

kers

: Pa

thog

en, c

linica

l sym

ptom

s & co

mm

ents

Sa

mpl

e co

llect

ion

Test

s to

requ

est

Send

to

Form

s to

com

plet

e

Rift

Valle

y fev

er (R

VF) v

irus

Feve

r with

flu-lik

e sym

ptoms

(inclu

ding m

yalgi

a, ar

thralg

ia or

head

ache

), ne

ck st

iffnes

s, se

nsitiv

ity to

light

(pho

topho

bia),

pain

behin

d the

eyes

, loss

of

appe

tite an

d vom

iting.

Comp

licati

ons m

ay in

clude

ocula

r (re

tinal)

dise

ase,

menin

goen

ceph

alitis

, hep

atitis

, or h

aemo

rrhag

ic fev

er. D

irect

conta

ct wi

th tis

sues

/fluids

of si

ck/de

ad ru

mina

nt an

imals

is co

nside

red a

majo

r risk

facto

r. Ac

cura

te da

tes of

expo

sure

, ons

et an

d pro

gres

sion o

f dise

ase i

s vita

l in ou

r inv

estig

ation

.

Bloo

d: Cl

otted

blo

od or

seru

m (re

d/yell

ow to

p tub

e)

RVF

Spec

ial P

athog

ens

Unit,

NICD

-NHL

S,

1 Mod

derfo

ntein

Rd.,

Sand

ringh

am,

Gaute

ng, 2

192

NICD

RVF

susp

ected

case

inv

estig

ation

form

Re

fer to

the H

ealth

care

Wor

kers

Hand

book

on R

VF fo

r fur

ther

infor

matio

n. Co

ntact

NICD

hotlin

e for

su

spec

ted R

VF ca

ses w

ith

haem

orrh

age/e

ncep

haliti

s. La

bora

tory

test

info

rmat

ion:

Av

ailab

le te

sts

Spec

ial In

stru

ctio

ns

Turn

-aro

und

time

Test

ing

labor

ator

y Se

rolog

y HAI

5 d

ays

IgM E

LISA

2-4 d

ays

PCR

24-4

8 hou

rs Vi

rus i

solat

ion

Pack

age a

s bioh

azar

dous

mate

rial, s

tored

an

d tra

nspo

rted a

t 4°C

.

18 da

ys

Spec

ial P

athog

ens U

nit, N

ICD-

NHLS

01

1 386

6376

01

1 386

6339

Note:

Con

ducti

ng a

full re

perto

ire of

sero

logica

l and

viro

logica

l tests

is st

rong

ly re

comm

ende

d. Te

st re

sults

are h

ighly

depe

nden

t on t

iming

of sp

ecim

en

colle

ction

in re

lation

to di

seas

e ons

et; th

erefo

re, te

sting

of ac

ute an

d con

vales

cent

spec

imen

s are

stro

ngly

reco

mmen

ded t

o con

firm/ex

clude

RVF

dia

gnos

is.

Simi

lar la

bora

tory p

roce

dure

for o

ther a

rbov

iruse

s, inc

lundin

g: ch

ikung

unya

, den

gue,

Wes

t Nile

, yell

ow fe

ver a

nd S

indbis

NI

CD-N

HLS

Labo

rator

y Han

dboo

k for

Diag

nosis

of P

riority

Com

munic

able

Dise

ases

, v2,

upda

ted 20

12/02

/02

15

14. S

AR

S (P

rovi

sion

al IC

D-1

0 U

04.9

) In

stru

ctio

ns fo

r Hea

lthca

re W

orke

rs:

Path

ogen

, clin

ical s

ympt

oms &

com

men

ts

Sam

ple c

ollec

tion

Test

s to

requ

est

Send

to

Form

s to

com

plet

e

Naso

phar

ynge

al/

orop

haryn

geal

swab

s Re

comm

ende

d swa

bs:

Swab

s with

Dac

ron t

ip an

d an

alumi

nium

or pl

astic

shaft

OR

Viro

cult f

locke

d swa

bs

All s

wabs

mus

t be p

laced

into

VTM

(vira

l tran

spor

t med

ium)

to pr

eser

ve th

e viru

s par

ticles

St

ool

SARS

coro

navir

us

High

feve

r (tem

p > 38

°C) w

ith ot

her s

ympto

ms th

at ma

y inc

lude

head

ache

, an o

vera

ll fee

ling o

f disc

omfor

t and

body

ache

s. So

me pe

ople

also h

ave m

ild re

spoir

atory

symp

toms a

t the o

utset.

10-2

0% of

patie

nts

have

diar

rhoe

a. Af

ter 2-

7 day

s, SA

RS pa

tients

may

deve

lop a

dry c

ough

. Mo

st pa

tients

deve

lop pn

eumo

nia.

Clott

ed bl

ood f

or se

rolog

y

SARS

Sp

ecial

Path

ogen

s Un

it, NI

CD-N

HLS,

1 M

odde

rfonte

in Rd

., Sa

ndrin

gham

, Ga

uteng

, 219

2.

Conta

ct NI

CD

Hotlin

e for

advic

e an

d to f

acilit

ate

labor

atory

testin

g.

Labo

rato

ry te

st in

form

atio

n:

Avail

able

test

s Sp

ecial

Inst

ruct

ions

Tu

rn-a

roun

d tim

e Te

stin

g lab

orat

ory

PCR

ELIS

A IgM

and

IgG

Obse

rve ap

prop

riate

infec

tion p

reve

ntion

and c

ontro

l pro

tocols

whe

n coll

ectin

g and

ha

ndlin

g spe

cimen

s. Pa

ckag

e as b

iohaz

ardo

us m

ateria

l, and

stor

e and

tran

spor

t at 4

°C.

Liaise

with

Spe

cial

Patho

gens

Unit

Sp

ecial

Path

ogen

s Unit

, NIC

D-NH

LS

011 3

86 63

39/63

76

NICD

-NHL

S La

bora

tory H

andb

ook f

or D

iagno

sis of

Prio

rity C

ommu

nicab

le Di

seas

es, v

2, up

dated

2012

/02/02

16

15. S

mal

lpox

(IC

D-1

0 B

03)

Inst

ruct

ions

for H

ealth

care

Wor

kers

: Pa

thog

en, c

linica

l sym

ptom

s &

com

men

ts

Sam

ple c

ollec

tion

Test

s to

requ

est

Send

to

Form

s to

com

plet

e

Small

pox v

irus

Feve

r, ma

laise

, hea

d and

body

ache

s, vo

mitin

g, pu

stular

rash

.

Cutan

eous

lesio

n sca

bs

OR pu

stule

fluid

Small

pox

Spec

ial P

athog

ens U

nit, N

ICD-

NHLS

, 1 M

odde

rfonte

in Rd

., Sa

ndrin

gham

, Gau

teng,

2192

Sp

ecim

ens r

eferre

d to U

S CD

C for

fur

ther t

estin

g.

Conta

ct NI

CD H

otline

for a

dvice

an

d to f

acilit

ate la

bora

tory t

estin

g.

Note:

Sma

llpox

was

decla

red e

radic

ated i

n 198

0 (i.e

. the v

irus d

oes n

ot cir

culat

e any

more

); ho

weve

r, it i

s con

sider

ed a

risk f

or us

e as a

biolo

gical

warfa

re

agen

t. In t

he ev

ent o

f a su

spec

ted de

liber

ate ex

posu

re (b

ioter

roris

t atta

ck):

Cons

ult th

e NIC

D-NH

LS H

ealth

care

Wor

kers

Hand

book

on B

ioter

roris

m for

de

tails

on th

e req

uired

resp

onse

. La

bora

tory

test

info

rmat

ion:

Av

ailab

le te

sts

Spec

ial In

stru

ctio

ns

Turn

-aro

und

time

Test

ing

labor

ator

y PC

R Ob

serve

appr

opria

te inf

ectio

n pre

venti

on an

d con

trol p

rotoc

ols w

hen c

ollec

ting a

nd ha

ndlin

g sp

ecim

ens.

Liaise

with

Spe

cial

Patho

gens

Unit

Sp

ecial

Path

ogen

s Unit

, NI

CD-N

HLS

011 3

86 63

39/63

76

NICD

-NHL

S La

bora

tory H

andb

ook f

or D

iagno

sis of

Prio

rity C

ommu

nicab

le Di

seas

es, v

2, up

dated

2012

/02/02

17

16. T

ypho

id F

ever

(IC

D-1

0 A

01.0

) In

stru

ctio

ns fo

r Hea

lthca

re W

orke

rs:

Path

ogen

, clin

ical s

ympt

oms

& co

mm

ents

Sa

mpl

e col

lectio

n Te

sts t

o re

ques

t Se

nd to

Fo

rms t

o co

mpl

ete

Salm

onell

a Typ

hi De

pend

ent o

n cas

e pre

senta

tion a

nd hi

story

Bloo

d for

cultu

re*

Bone

mar

row

aspir

ate

1. En

teric

fever

Stoo

l (or r

ectal

swab

if sto

ol ca

nnot

be

obtai

ned)

Bl

ood

2. Ex

traint

estin

al co

mplic

ation

s (e

.g. en

doca

rditis

, pne

umon

ia,

menin

gitis,

arthr

itis, fo

cal

absc

esse

s)

Foca

l infec

tions

: sub

mit a

ppro

priat

e sp

ecim

en (e

.g. sp

utum,

CSF

, syn

ovial

flu

id, pu

s)

Cultu

re fo

r typ

hoid

Loca

l NHL

S lab

orato

ry. S

pecim

ens m

ay

be re

ferre

d to a

regio

nal N

HLS

labor

atory

depe

nding

on ca

pacit

y at th

e loc

al lev

el.

NICD

-NHL

S, E

nteric

Dise

ases

Refe

renc

e Un

it (ED

RU),

will v

erify

the i

solat

e whe

re

poss

ible,

and c

an pe

rform

mole

cular

tes

ts (P

CR) w

hen u

rgen

t co

nfirm

ation

/diag

nosis

is re

quire

d.

Stan

dard

NHL

S sp

ecim

en

subm

ission

form

for c

linica

l sp

ecim

ens.

Fo

r cas

e inv

estig

ation

s, co

mplet

e NIC

D typ

hoid

fever

case

inve

stiga

tion

form.

*Bloo

d cult

ure i

s the

diag

nosti

c tes

t of c

hoice

for a

cute

case

s of ty

phoid

feve

r.

Labo

rato

ry te

st in

form

atio

n:

Avail

able

test

s Sp

ecial

Inst

ruct

ions

Tu

rn-

arou

nd

time

Test

ing

labor

ator

y

Prim

ary i

denti

ficati

on, s

eroty

ping a

nd

antim

icrob

ial su

scep

tibilit

y If s

tool s

pecim

en ca

nnot

be pr

oces

sed w

ithin

2 hou

rs: us

e a co

tton-

tippe

d swa

b to

samp

le sto

ol sp

ecim

en. P

lace s

wab w

ith sa

mpled

stoo

l in C

ary-B

lair t

rans

port

mediu

m. S

ubmi

t both

the i

nitial

conta

iner w

ith st

ool a

nd sw

ab in

tran

spor

t med

ium to

the

lab.

Tran

spor

t refr

igera

ted, d

o NOT

free

ze.

Liaise

with

loc

al lab

Lo

cal N

HLS

labor

atory

Furth

er id

entifi

catio

n 2-

3 day

s Ex

tende

d ser

otypin

g 5-

7 day

s An

timicr

obial

susc

eptib

ility t

estin

g 2-

3 day

s PC

R 1

day

DNA

finge

rprin

ting o

f stra

ins vi

a PFG

E an

alyse

s 4 d

ays

DNA

finge

r prin

ting o

f stra

ins vi

a MLV

A

For s

tool /

recta

l swa

b spe

cimen

s: se

e note

abov

e. Cu

lture

isola

tes se

nt fro

m oth

er la

bora

tories

: Isola

tes su

bcult

ured

onto

Dorse

t tra

nspo

rt me

dium

incub

ated a

t 37 d

egre

es ov

ernig

ht at

sour

ce la

bora

tory,

prior

to

subm

ission

to E

DRU.

Dor

set s

lope t

o be k

ept a

t roo

m tem

pera

ture u

pon r

eceip

t at

NICD

2 d

ays

Enter

ic Di

seas

es

Refer

ence

Unit

(E

DRU)

, NIC

D-NH

LS

011 5

55 03

33

011 5

55 03

34

Note:

Ser

ologic

al tes

ting (

the W

idal te

st) is

NOT

reco

mmen

ded d

ue to

the l

ow se

nsitiv

ity an

d spe

cifici

ty of

this t

est.

Susp

ected

typh

oid fe

ver c

ases

shou

ld ha

ve ap

prop

riate

spec

imen

s sub

mitte

d for

cultu

re as

detai

led ab

ove.

NICD

-NHL

S La

bora

tory H

andb

ook f

or D

iagno

sis of

Prio

rity C

ommu

nicab

le Di

seas

es, v

2, up

dated

2012

/02/02

18

17. V

iral H

emor

rhag

ic F

ever

s (IC

D-1

0 A

96)

Inst

ruct

ions

for H

ealth

care

Wor

kers

: Pa

thog

en, c

linica

l sym

ptom

s & co

mm

ents

Sa

mpl

e col

lectio

n Te

sts t

o re

ques

t Se

nd to

Fo

rms t

o co

mpl

ete

Bloo

d: Cl

otted

bloo

d (re

d/yell

ow to

p tub

e)

and E

DTA

blood

(p

urple

top t

ube)

Vira

l hae

mor

rhag

ic fe

vers

Fe

ver,

head

ache

, arth

ralgi

a, my

algia,

rash

, hae

morrh

agic

manif

estat

ions,

gastr

ointes

tinal

symp

toms,

patho

logy l

ab in

dicato

rs (in

cludin

g thr

ombo

cytop

enia,

raise

d live

r tra

nsam

inase

s). R

ecen

t trav

el an

d exp

osur

e eve

nts (e

.g. co

ntact

with

anim

als, b

ats, ti

ck bi

tes, s

ick

patie

nts) m

ay pr

ovide

insig

ht.

Accu

rate

dates

of ex

posu

re, o

nset

and p

rogr

essio

n of d

iseas

e are

vital

in

our in

vesti

gatio

n.

Othe

r spe

cimen

s whe

re

indica

ted e.

g. CS

, live

r bio

psies

in po

st mo

rtem

case

s.

VHF

Spec

ial P

athog

ens U

nit,

NICD

-NHL

S, 1

Modd

erfon

tein R

d.,

Sand

ringh

am, G

auten

g, 21

92

All c

ases

to be

notifi

ed

to the

NIC

D Ho

tline.

Case

s will

be re

ferre

d ac

cord

ingly.

Co

mplet

e the

NIC

D VH

F Te

st Re

ques

t For

m

Labo

rato

ry te

st in

form

atio

n:

Avail

able

test

s Sp

ecial

Inst

ruct

ions

Tu

rn-a

roun

d tim

e Te

stin

g lab

orat

ory

Sero

logy:

fluor

esce

nt an

tibod

y tes

t, IgG

and

IgM

24-4

8 hrs

Sero

logy:

ELIS

A, Ig

G an

d IgM

3-

5 day

s PC

R 24

-48 h

rs Vi

rus i

solat

ion

Institu

te im

media

te inf

ectio

n pre

venti

on an

d con

trol m

easu

res.

Pa

ckag

e as b

iohaz

ardo

us m

ateria

l, and

stor

e and

tran

spor

t at

4°C.

3 w

eeks

Spec

ial P

athog

ens U

nit, N

ICD-

NHLS

01

1 386

6339

/6376

Note

: Con

ducti

ng a

full re

perto

ire of

sero

logica

l and

viro

logica

l tests

is m

anda

tory.

Test

resu

lts ar

e high

ly de

pend

ent o

n tim

ing of

spec

imen

colle

ction

in

relat

ion to

dise

ase o

nset;

ther

efore

, mult

iple s

pecim

ens a

re re

quire

d to c

onfirm

/exclu

de di

agno

sis.

Infe

ctio

n pr

even

tion

and

cont

rol f

or vi

ral h

aem

orrh

agic

feve

rs:

Comp

rehe

nsive

docu

ments

detai

ling t

he ne

cess

ary p

reca

ution

s and

appr

opria

te inf

ectio

n con

trol p

racti

ce ca

n be a

cces

sed a

s foll

ows:

Re

feren

ce

guide

for

he

althc

are

worke

rs:

WHO

Inf

ectio

n Co

ntrol

for

viral

haem

orrh

agic

fever

s in

the

Afric

an

healt

h ca

re

settin

g: htt

p://w

ww.w

ho.in

t/csr/

reso

urce

s/pub

licat i

ons/e

bola/

WHO

_EMC

_ESR

_98_

2_EN

/en/

Re

feren

ce g

uide

for la

bora

tory

staff:

Q-Pu

lse, d

ocum

ent n

umbe

r GPL

089

0 (In

fectio

n Co

ntrol

Servi

ces

Labo

rator

y, Jo

hann

esbu

rg) a

nd G

PL 0

947

(Viro

logy L

abor

atory,

Gro

ote S

chuu

r Hos

pital)

.

NICD

-NHL

S La

bora

tory H

andb

ook f

or D

iagno

sis of

Prio

rity C

ommu

nicab

le Di

seas

es, v

2, up

dated

2012

/02/02

19

18. V

iral H

epat

itis

(ICD

-10

B15

-19)

In

stru

ctio

ns fo

r Hea

lthca

re W

orke

rs:

Path

ogen

, clin

ical s

ympt

oms

& co

mm

ents

Sa

mpl

e col

lectio

n Te

sts t

o re

ques

t Se

nd to

Fo

rms t

o co

mpl

ete

Hepa

titis A

viru

s HA

V IgM

He

patiti

s B vi

rus

sAg,

sAb,

cIgM,

total

core

Ab

, eAg

, eAb

He

patiti

s C vi

rus

Bloo

d: Pl

asma

in E

DTA

tube o

r ACD

tube

, an

d/or s

erum

(SST

tube

)

HCV

Antib

ody

Loca

l NHL

S lab

orato

ry St

anda

rd N

HLS

spec

imen

su

bmiss

ion fo

rm

Labo

rato

ry te

st in

form

atio

n:

Avail

able

test

s Sp

ecial

Inst

ruct

ions

Tu

rn-a

roun

d tim

e Te

stin

g lab

orat

ory

HAV

IgM

sAg,

sAb,

cIgM,

total

core

Ab,

eAg,

eAb

HCV

Antib

ody

Perfo

rmed

at al

l regio

nal a

nd pr

ovinc

ial la

bora

tories

: lia

ise w

ith in

dividu

al lab

orato

ry Lo

cal N

HLS

labor

atory

HBV

PCR

HBV

viral

load

HBV

geno

typing

10 da

ys

HCV

PCR

15 da

ys

HCV

geno

typing

HCV

viral

load

4°C

to ro

om te

mper

ature

, mini

mum

1500

µl pl

asma

10 da

ys

Spec

ialize

d Mole

cular

Diag

nosti

cs

Unit,

NICD

-NHL

S

011 3

86 64

39

NICD

-NHL

S La

bora

tory H

andb

ook f

or D

iagno

sis of

Prio

rity C

ommu

nicab

le Di

seas

es, v

2, up

dated

2012

/02/02

20

19. Y

ello

w F

ever

(IC

D-1

0 A

95)

Inst

ruct

ions

for H

ealth

care

Wor

kers

: Pa

thog

en, c

linica

l sym

ptom

s & co

mm

ents

Sa

mpl

e col

lectio

n Te

sts t

o re

ques

t Se

nd to

Fo

rms t

o co

mpl

ete

Yello

w fe

ver v

irus (

an ar

bovir

us)

Rash

, arth

ralgi

a, my

algia,

feve

r, en

ceph

alitis

, trav

el his

tory/i

nsec

t bit

esTr

avel

to ye

llow

fever

area

s with

out p

re-tr

avel

vacc

inatio

n. Pa

tients

are e

xpos

ed th

roug

h mos

quito

bites

.

Clott

ed bl

ood a

nd se

rum

Othe

r spe

cimen

s whe

re

indica

ted: C

SF, li

ver b

iopsie

s in

post-

morte

m ca

ses.

Yello

w fev

er

Post

-vac

cinat

ion

yello

w fe

ver a

ntib

odies

Cl

otted

bloo

d and

seru

m Ye

llow

fever

an

tibod

ies

Spec

ial P

athog

ens

Unit,

NICD

-NHL

S, 1

Modd

erfon

tein R

d.,

Sand

ringh

am,

Gaute

ng, 2

192.

Stan

dard

NHL

S sp

ecim

en

subm

ission

form

.

Labo

rato

ry te

st in

form

atio

n:

Avail

able

test

s Sp

ecial

Inst

ruct

ions

Tu

rn-a

roun

d tim

e Te

stin

g lab

orat

ory

Sero

logy:

HAI

5 day

s IgM

Elis

a/IFA

2-

4 day

s PC

R 24

-48 h

ours

Viru

s iso

lation

Obse

rve ap

prop

riate

infec

tion p

reve

ntion

and c

ontro

l pro

tocols

whe

n coll

ectin

g and

hand

ling

spec

imen

s. Pa

ckag

e as b

iohaz

ardo

us m

ateria

l, and

stor

e and

tran

spor

t at 4

°C (o

r on i

ce

pack

s).

18 da

ys

Spec

ial P

athog

ens U

nit,

NICD

-NHL

S 01

1 386

6339

/6376

Note:

Con

ducti

ng a

full re

perto

ire of

sero

logica

l and

viro

logica

l tests

is st

rong

ly re

comm

ende

d. Te

st re

sults

are h

ighly

depe

nden

t on t

iming

of sp

ecim

en

colle

ction

in re

lation

to di

seas

e ons

et; th

erefo

re, te

sting

of ac

ute an

d con

vales

cent

spec

imen

s is s

trong

ly re

comm

ende

d to c

onfirm

/exclu

de ye

llow

fever

dia

gnos

is.

Testi

ng of

post-

vacc

inatio

n anti

bodie

s is u

suall

y not

indica

te bu

t is of

ten re

ques

ted fo

r tra

vel c

leara

nce p

urpo

ses.

Vacc

inated

patie

nts m

ay no

t nec

essa

rily

deve

lop de

tectab

le an

tibod

y res

pons

e and

ther

e are

not s

tanda

rd an

tibod

y cut-

offs t

hat in

dicate

immu

nity.

Yello

w fev

er va

ccina

tion s

hould

be re

peate

d in

trave

llers

to en

demi

c cou

ntries

ever

y 10 y

ears

and r

ecor

ded o

n vac

cinati

on ca

rds.

NICD

-NHL

S La

bora

tory H

andb

ook f

or D

iagno

sis of

Prio

rity C

ommu

nicab

le Di

seas

es, v

2, up

dated

2012

/02/02

21

20. C

lust

ers

(out

brea

ks) o

f Gas

troi

ntes

tinal

Dis

ease

/Foo

dbor

ne D

isea

se

Inves

tigati

ons s

hould

be in

itiated

in th

e eve

nt of

2 or m

ore l

inked

case

s of g

astro

enter

itis or

food

born

e illn

ess.

Depa

rtmen

t of H

ealth

or N

ICD

foodb

orne

illne

ss ca

se

inves

tigati

on fo

rms s

hould

be co

mplet

ed. A

line l

ist sh

ould

addit

ionall

y be c

omple

ted fo

r all i

nves

tigati

ons.

Refer

to th

e NIC

D-NH

LS H

andb

ook f

or D

iagno

sis of

Foo

dbor

ne

Illnes

s Outb

reak

s and

the N

ICD

Quick

Refe

renc

e Guid

e for

Inve

stiga

tion o

f Foo

dbor

ne D

iseas

e Outb

reak

s for

furth

er in

forma

tion.

Samp

les of

the i

mplic

ated

food/b

ever

age A

ND cl

inica

l hum

an sa

mples

(i.e.

stool,

recta

l swa

bs an

d/or v

omitu

s) sh

ould

be co

llecte

d for

all o

utbre

aks w

hen p

ossib

le, an

d ALL

samp

les co

llecte

d sh

ould

be re

ferre

d to t

he de

signa

ted N

HLS

Publi

c Hea

lth La

bora

tory .

20.1

. B

acte

rial i

dent

ifica

tion

(hum

an s

peci

men

s)

Inst

ruct

ions

for h

ealth

care

wor

kers

: Pa

thog

en, c

linica

l sy

mpt

oms &

com

men

ts

Sam

ple c

ollec

tion

Test

s to

requ

est

Send

to

Form

s to

com

plet

e Vo

mitin

g: vo

mitus

/ gas

tric co

ntents

Di

arrh

oea:

stool

spec

imen

, or r

ectal

swab

if sto

ol ca

nnot

be ob

taine

d. If s

tool

spec

imen

cann

ot be

proc

esse

d with

in 2 h

ours:

use a

cotto

n-tip

ped s

wab t

o sa

mple

stool

spec

imen

. Plac

e swa

b with

samp

led st

ool in

Car

y-Blai

r tra

nspo

rt me

dium.

Sub

mit b

oth th

e init

ial co

ntaine

r with

stoo

l and

swab

in tr

ansp

ort

mediu

m to

the la

b. Tr

ansp

ort r

efrige

rated

, do N

OT fr

eeze

. Fe

ver:

blood

cultu

re an

d ser

um

Envir

onme

ntal is

olates

in w

ater/f

ood-

born

e dise

ase o

utbre

aks o

nly.

Food

born

e illn

ess

inves

tigati

on

Bacte

rial p

athog

ens

Neur

ologic

al fea

tures

: ser

um, s

tool a

nd vo

mitus

/gastr

ic co

ntents

Bo

tulism

Spec

imen

s mus

t be

refer

red t

o the

de

signa

ted P

ublic

He

alth L

abor

atory

for sp

ecial

ised

testin

g (se

e con

tact

detai

ls be

low)

Clini

cal s

pecim

ens:

stand

ard N

HLS

spec

imen

su

bmiss

ion fo

rm,

clear

ly sta

ting

‘food

born

e illn

ess

inves

tigati

on’.

Whe

n en

teric

patho

gens

(suc

h as

Salm

onell

a sp

p.) a

re c

ultur

ed, w

e re

ques

t tha

t iso

lates

are

refer

red

to the

Ente

ric D

iseas

es C

entre

, NIC

D for

furth

er

char

acter

isatio

n. Th

is wi

ll ena

ble th

e dete

ction

of w

idesp

read

food

born

e illn

ess o

utbre

aks,

in ad

dition

to fu

lly ch

arac

terisi

ng lo

cal o

utbre

aks.

La

bora

tory

test

info

rmat

ion:

Av

ailab

le te

sts

Spec

ial In

stru

ctio

ns

Turn

-aro

und

time

Test

ing

labor

ator

y Mi

crosc

opy,

cultu

re an

d anti

micro

bial s

usce

ptibil

ity (M

C&S)

Ba

cteria

l toxin

detec

tion

Tran

spor

t refr

igera

ted, d

o NO

T fre

eze.

Liaise

with

lab

Desig

nated

NHL

S Pu

blic

Healt

h Lab

orato

ry Di

arrh

oeag

enic

E. co

li: Ide

ntific

ation

2-

3 day

s Di

arrh

oeag

enic

E. co

li: Ex

tende

d ser

otypin

g 5-

7 day

s Di

arrh

oeag

enic

E. co

li: Vi

rulen

ce ge

ne id

entifi

catio

n via

multip

lex P

CR

2 day

s Di

arrh

oeag

enic

E. co

li: DN

A fin

gerp

rintin

g of s

trains

via P

FGE

analy

ses

4 day

s Sa

lmon

ella a

nd S

higell

a: Ide

ntific

ation

2-

3 day

s Sa

lmon

ella a

nd S

higell

a: Ex

tende

d ser

otypin

g 5-

7 day

s Sa

lmon

ella a

nd S

higell

a: DN

A fin

gerp

rintin

g of s

trains

via P

FGE

analy

ses a

nd M

LVA.

Isolat

es su

b-cu

lture

d onto

Do

rset tr

ansp

ort m

edium

inc

ubate

d at 3

7ºC

over

night

at so

urce

lab

orato

ry, pr

ior to

su

bmiss

ion to

EDR

U 4 d

ays

Enter

ic Di

seas

es R

efere

nce

Unit (

EDRU

), NI

CD-N

HLS

011-

555-

0333

/4

Botul

ism te

sting

Tr

ansp

ort r

efrige

rated

, do

NOT

freez

e. Lia

ise w

ith la

b Sp

ecial

Bac

terial

Path

ogen

s Re

feren

ce U

nit, N

ICD-

NHLS

, 011

-555

-030

6/31

NICD

-NHL

S La

bora

tory H

andb

ook f

or D

iagno

sis of

Prio

rity C

ommu

nicab

le Di

seas

es, v

2, up

dated

2012

/02/02

22

20.2

. Vi

ral i

dent

ifica

tion

Te

sts fo

r vira

l path

ogen

s tha

t may

be

the c

ause

of f

oodb

orne

illne

ss in

ciden

ts ar

e no

t rou

tinely

per

forme

d, an

d the

se n

eed

to be

requ

ested

spe

cifica

lly

throu

gh lia

ison a

nd di

scus

sion w

ith th

e Vira

l Gas

troen

teritis

Unit

and t

he O

utbre

ak R

espo

nse U

nit, N

HLS-

NICD

. In

stru

ctio

ns fo

r hea

lthca

re w

orke

rs:

Path

ogen

, clin

ical s

ympt

oms &

com

men

ts

Sam

ple c

ollec

tion

Test

s to

requ

est

Send

to

Form

s to

com

plet

e Ad

enov

irus t

ype 4

0/41,

astro

virus

, ent

eric

aden

iviru

s, no

rovir

us, r

otav

irus:

Di

arrh

oea,

vomi

ting,

fever

Stoo

l (note

, rec

tal sw

abs a

re un

suita

ble

spec

imen

s)

Vira

l ga

stroe

nteriti

s Vi

ral

Gastr

oente

ritis

Unit,

NICD

-NHL

S.

NICD

Vira

l Ga

stroe

nteriti

s Unit

Sp

ecim

en fo

rm.

Thro

at sw

ab (in

vira

l tran

spor

t med

ium)

Urine

St

ool

Conju

nctiv

al sw

ab (in

vira

l tran

spor

t med

ium),

Aden

oviru

s: R

TI, h

aemo

rrhag

ic cy

stitis

, ga

stroe

nteriti

s

Resp

irator

y spe

cimen

s: tra

chea

l asp

irate,

naso

-ph

aryn

geal

aspir

ate, b

ronc

ho-a

lveola

r lava

ge, e

tc.

Aden

oviru

s Vi

rus I

solat

ion,

NICD

-NHL

S

Echo

virus

: 1. D

iarrh

oea,

vomi

ting,

fever

St

ool s

pecim

en (o

r rec

tal sw

ab in

vira

l tran

spor

t me

dium

if stoo

l can

not b

e obta

ined)

En

terov

irus

CSF

in ca

se of

men

ingitis

/ enc

epha

litis

Stoo

l spe

cimen

(or r

ectal

swab

in vi

ral tr

ansp

ort

mediu

m if s

tool c

anno

t be o

btaine

d)

Echo

virus

: 2. M

ening

itis/ e

ncep

haliti

s

Thro

at sw

ab (in

vira

l tran

spor

t med

ium)

Enter

oviru

s/ en

ceph

alitis

Spec

ialise

d Mo

lecula

r Di

agno

stics

Unit

(S

MDU)

, NIC

D-NH

LS.

Ad

enov

irida

e, As

trovir

idae

, Birn

aviri

dae,

Calic

ivirid

ae, C

oron

oviri

dae,

Pico

rnav

irida

e, Re

oviri

dae:

Ga

stroe

nteriti

s, AF

P

Stoo

l Vi

ral

gastr

oente

ritis

Elec

tron

Micro

scop

y Unit

, NI

CD-N

HLS

Stan

dard

NHL

S sp

ecim

en su

bmiss

ion

form

for cl

inica

l sp

ecim

ens.

Labo

rato

ry te

st in

form

atio

n:

Avail

able

test

s Sp

ecial

Inst

ruct

ions

Tu

rn-a

roun

d tim

e Te

stin

g lab

orat

ory

Shell

vial

cultu

re

Tran

spor

t at 4

ºC. S

ample

shou

ld re

ach

labor

atory

withi

n 72h

rs 5 d

ays

Viru

s Iso

lation

, NIC

D-NH

LS

011-

386-

6420

/22

Aden

oviru

s typ

e 40/4

1 dete

ction

– EL

ISA

Astro

virus

, ente

ric ad

enivi

rus,

noro

virus

– re

al-tim

e PCR

Ro

taviru

s dete

ction

– EL

ISA/

dipsti

ck, r

eal-ti

me P

CR

Liaise

with

lab

Viru

s Iso

lation

21

days

Vira

l Gas

troen

teritis

Unit

, NIC

D-NH

LS. 0

11-5

55-0

370

Enter

oviru

s dete

ction

– re

al-tim

e PCR

Stor

e and

tran

spor

t at 4

ºC. M

ainten

ance

of

cold

chain

is re

comm

ende

d fro

m co

llecti

on to

re

ceipt

at N

ICD

5 d

ays

Spec

ialise

d Mole

cular

Diag

nosti

cs

Unit,

011 3

86 63

30 or

011 3

86 64

39

Vira

l scre

ening

(neg

ative

stain

ing w

ith 2%

PTA

).

Refrig

erate

d tra

nspo

rt. M

ay be

dried

smea

r on

slide

. Tes

ts ca

n’t be

used

for in

itial d

iagno

sis.

3.5hr

s El

ectro

n Micr

osco

py U

nit, N

ICD-

NHLS

. 011

-386

-631

8 NI

CD-N

HLS

Labo

rator

y Han

dboo

k for

Diag

nosis

of P

riority

Com

munic

able

Dise

ases

, v2,

upda

ted 20

12/02

/02

23

20.3

. En

viro

nmen

tal S

ampl

ing:

Foo

d, M

ilk a

nd W

ater

Tes

ting

Conta

ct the

Pub

lic H

ealth

Lab

orato

ry for

instr

uctio

ns o

n sp

ecim

en co

llecti

on a

nd su

bmiss

ion. S

ampli

ng sh

ould

be sy

stema

tic, a

nd sh

ould

cove

r as w

ide a

ra

nge

as p

ossib

le. W

here

pos

sible,

diffe

rent

types

of f

oods

mus

t be

place

d in

sepa

rate

conta

iners.

The

qua

ntity

of foo

d tak

en m

ust b

e su

fficien

t. An

en

viron

menta

l hea

lth p

racti

tione

r mus

t noti

fy the

own

er/m

anag

er a

t the

food

pro

ducti

on/ca

tering

facil

ity th

at sa

mples

nee

d to

be ta

ken

(pro

vide

a re

ason

). Sa

mples

for m

icrob

iolog

ical a

nalys

is mu

st be

coll

ected

with

dec

ontam

inated

equ

ipmen

t (im

merse

equ

ipmen

t in

70%

alco

hol a

nd fl

ame

using

a p

ortab

le sp

irit bu

rner

until

alcoh

ol ev

apor

ates,

allow

cooli

ng be

fore u

sing)

. In

stru

ctio

ns fo

r Env

ironm

enta

l Hea

lth P

ract

ition

ers (

and

othe

r hea

lth au

thor

ities

):

Path

ogen

, clin

ical

sym

ptom

s & co

mm

ents

Sa

mpl

e col

lectio

n Te

sts t

o re

ques

t Se

nd to

Fo

rms t

o co

mpl

ete

Food

: Vol:

100g

(con

taine

r full

), Co

ntaine

r: ste

rile, tr

ansp

ort te

mp: 2

- 8 d

eg C

, reje

cted

after

: >48

hour

s at r

oom

tempe

ratur

e (RT

) Mi

lk: V

ol: 10

0ml, c

ontai

ner:

origi

nal/ s

terile

, tran

spor

t temp

: 2 -

8 deg

C, r

ejecte

d afte

r: >2

4 hrs

at RT

W

ater

(pot

abilit

y): V

ol: 12

0ml, c

ontai

ner:

sterile

, tran

spor

t temp

: 2 -8

deg C

, reje

cted

after

: >24

hrs a

t RT

Food

- and

wat

er-b

orne

pa

thog

ens

Wat

er (S

almon

ella s

pp., V

. cho

lerae

, etc

.): V

ol: 10

00ml

for e

ach t

est, c

ontai

ner:

clean

/ne

w / s

terile

, tran

spor

t temp

: RT

(if de

liver

ed th

e sam

e day

), re

jected

after

: >48

hrs a

t RT

Liaise

with

tes

ting

labor

atory

Desig

nated

NH

LS

Publi

c He

alth

Labo

rator

y

See S

ectio

n 20.4

for

the d

esign

ated

Publi

c Hea

lth

Labo

rator

y Su

bmiss

ion F

orms

.

Tabl

e: T

estin

g of

clin

ical a

nd en

viron

men

tal s

pecim

ens b

y spe

cialis

ed la

bora

torie

s for

food

- and

wat

erbo

rne o

utbr

eaks

La

bora

tory

N

HLS

-ICSL

NH

LS P

ort E

lizab

eth

N

HLS

Pub

lic H

ealth

, KZN

NH

LS G

reen

Poi

nt

Spec

imen

type

C

linic

al1

Env2

C

linic

al1

Env2

C

linic

al1

Env2

C

linic

al1

Env2

Sal

mon

ella

spp

.

Shi

gella

spp

.

E. c

oli O

157

x

x

x B

acill

us c

ereu

s

Clo

strid

ium

per

fring

ens

Cam

pylo

bact

er s

pp.

x

x

x Li

ster

ia m

onoc

ytog

enes

x

x

x S

taph

loco

ccus

are

us

Vib

rio s

pp.

Bac

teria

l tox

ins3

x

x

x 1 C

linica

l spe

cimen

s: sto

ol, vo

mitus

. 2 Env

ironm

ental

spec

imen

s: foo

d, wa

ter, m

ilk. 3 S

. aur

eus a

nd B

. cer

eus e

ntero

toxin

tests

from

isolat

es. C

. per

fring

ens e

ntero

toxin

from

stools

and i

solat

es

NICD

-NHL

S La

bora

tory H

andb

ook f

or D

iagno

sis of

Prio

rity C

ommu

nicab

le Di

seas

es, v

2, up

dated

2012

/02/02

24

NICD

-NHL

S La

bora

tory H

andb

ook f

or D

iagno

sis of

Prio

rity C

ommu

nicab

le Di

seas

es, v

2, up

dated

2012

/02/02

25

20.4

. C

onta

ct d

etai

ls fo

r gas

troi

ntes

tinal

dis

ease

out

brea

ks

It is

esse

ntial

for p

ublic

hea

lth o

fficial

s / h

ealth

care

wor

kers

inves

tigati

ng fo

odbo

rne i

llnes

s outb

reak

s to n

otify

the N

HLS

staff

when

spec

imen

s are

colle

cted

as pa

rt of

an ou

tbrea

k. AL

L spe

cimen

s coll

ected

shou

ld be

refer

red t

o one

of th

e des

ignate

d pub

lic he

alth l

abor

atorie

s: Ta

ble:

Des

igna

ted

NHLS

Pub

lic H

ealth

Lab

orat

ories

cont

act d

etail

s and

test

s offe

red

* P

rovin

ces r

efer

ring

to d

esig

nate

d pu

blic

healt

h lab

orat

ory

Labo

rato

ry

Addr

ess

Cont

act P

erso

n

Test

s offe

red

1 Ga

uteng

Lim

popo

Mp

umala

nga

North

ern C

ape

Free

Stat

e

NHLS

Infec

tion C

ontro

l Ser

vice

Labo

rator

y (IC

SL),

Joha

nnes

burg

Pu

blic H

ealth

Sam

ple S

ubmi

ssion

For

m

Wits

Med

ical S

choo

l, Roo

m 3T

09, 7

Yor

k Rd.

Parkt

own,

Joha

nnes

burg

, 219

3.

Mr. R

ob S

tewar

t Te

l. 011

-489

-857

8/9 or

011-

717-

2496

2 Kw

aZulu

Nata

l NH

LS P

ublic

Hea

lth La

bora

tory K

ZN

Publi

c Hea

lth S

ample

Sub

miss

ion F

orm

3rd F

loor,

149 P

rince

Stre

et,

Durb

an, 4

001.

Mr

. Leo

n Tay

lor / M

s Ind

rani

Chett

y Te

l: 031

-327

-674

3 / 67

52

Full r

ange

of fo

odbo

rne

patho

gen t

ests

offer

ed

3 W

ester

n Cap

e NH

LS P

ublic

Hea

lth La

bora

tory,

Gree

n Po

int

Publi

c Hea

lth S

ample

Sub

miss

ion F

orm

Old C

ity H

ospit

al Co

mplex

, Po

rtwoo

d Roa

d, Gr

eenp

oint,

8000

.

Mr. J

ohan

n Stey

l / Ms

An

thene

tte H

eyde

nryc

h Te

l: 021

-417

-935

4 / 93

55

4 Ea

stern

Cap

e NH

LS P

ublic

Hea

lth La

bora

tory,

Port

Eliza

beth

Publi

c Hea

lth S

ample

Sub

miss

ion F

orm

Corn

er of

Buc

kingh

am an

d Ea

stbor

ne R

oad,

Moun

t Cro

ix,

Port

Eliza

beth,

6000

.

Ms V

anes

sa P

earce

Te

l: 041

-395

-617

4

** Fo

odbo

rne p

athog

ens:

Testi

ng fo

r E. c

oli O

157,

Cam

pylob

acte

r spp

., Lis

teria

mon

ocyto

gene

s, &

Bacte

rial to

xins i

s re

ferre

d to N

HLS-

ICSL

.

* Sam

ples /

spec

imen

s may

also

be tr

ansp

orted

dire

ctly t

o the

NHL

S-IC

SL fo

r tes

ting;

** Pu

blic H

ealth

Labo

rator

ies to

refer

to N

HLS-

ICSL

, Joh

anne

sbur

g He

althc

are w

orke

rs an

d lab

orato

ry sta

ff may

addit

ionall

y utili

se th

e foll

owing

conta

ct po

ints f

or di

scus

sion o

f cas

es/ou

tbrea

ks if

need

ed:

NI

CD H

otlin

e: 08

2-88

3-99

20 (f

or us

e by h

ealth

care

profe

ssion

als on

ly)

NI

CD D

ivisio

n of

Sur

veilla

nce,

Outb

reak

Res

pons

e an

d Tr

avel

Healt

h: M

s Ch

arlen

e Ja

cobs

: 011

-555

054

1, ch

arlen

ej@nic

d.ac.z

a; Dr

. Aya

nda

Ceng

imbo

: 011

-555

-054

1, ay

anda

c@nic

d.ac.z

a ; Mr

. Bre

tt Arch

er: 0

11-3

86-6

354,

brett

a@nic

d.ac.z

a;

NH

LS In

fect

ion

Cont

rol S

ervic

es L

abor

ator

y (IC

SL):

Mr. R

ob S

tewar

t: 011

-489

-857

8/9 or

011-

717-

2496

, rob

.stew

art@

nhls.

ac.za

NHLS

Pub

lic H

ealth

Lab

orat

ory K

ZN :

Mr. L

eon T

aylor

: 031

-327

-674

3, leo

n.tay

lor@

nhls.

ac.za

NHLS

Pub

lic H

ealth

Lab

orat

ory G

reen

Poi

nt: M

r. Jo

hann

Stey

l: 021

-417

9354

, joha

n.stey

l@nh

ls.ac

.za

NH

LS P

ublic

Hea

lth L

abor

ator

y Por

t Eliz

abet

h: M

s Van

essa

Pea

rce: 0

41-3

95-6

174,

vane

ssa.p

earce

@nh

ls.ac

.za