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NCBO Driving Biological Project
Ontology-Based Annotation of Biomedical Time-Series
DataRai Winslow & Steve Granite
Last update October 2008
Motivating ProblemMotivating Problem
CardioVascular Research Grid:
Data Services
CardioVascular Research Grid:
Data Services
CVRG Dashboard
Developed by CVRG
Developed by NCI-caBIG
Other Open Source
ProteomicsData Service
PACS (DCM4CHEE),DICOM DataService
ECG DataService
Study Data Service(OpenClinica)
mRNAExpressionData Service
SNP/GWASData Service Other CVRG Nodes
CardioVascular Research Grid:
Analysis Services
CardioVascular Research Grid:
Analysis Services
Heart Shape & Motion Analyses(LDDMM, PTA)
Machine Learning;Rweb, geWorkbench
ECG AnalysisServices
Other CVRG Nodes
CVRG DashboardWorkflow Access
Current CVRG ArchitectureCurrent CVRG Architecture
Apache Axis 2 Web ServicesApache Axis 2 Web Services
Google Web Toolkit & Visualization APIGoogle Web Toolkit & Visualization APILibrariesLibraries
Gadget/Google DashboardGadget/Google Dashboard
Web BrowserWeb Browser
User InterfaceUser InterfaceLayerLayer
MiddlewareMiddlewareLayerLayer
Data LayerData Layer Open-source Databases, XML & Open-source Databases, XML & File SystemsFile Systems
Globus Grid Toolkit 4.xGlobus Grid Toolkit 4.x
caGrid ArchitecturecaGrid Architecture
Prior and New ResultsPrior and New Results
ECG Ontology - DevelopmentECG Ontology - Development
1Writing Committee for Electrophysiology Clinical Data Standards (2006). Circulation 114: 25341Writing Committee for Electrophysiology Clinical Data Standards (2006). Circulation 114: 2534
ECG Ontology - Where We AreECG Ontology - Where We AreAA BB
CC
NCBORetrieverNCBORetriever
NCBORetriever DemonstrationNCBORetriever Demonstration
CVRG DashboardCVRG Dashboard
CVRG ECG Gadget & DashboardCVRG ECG Gadget & Dashboard
• Dashboard- Accessible from anywhere with a web browser
- More user control over components than web portal
- Interface for Federated Querying, integrating Clinical, ECG and Imaging data
• Gadget- Lightweight - 200 MBs software
- “Load and Go” and you are a CVRG node
- Cross-platform compatibility
- Ability to run on a G3 phone
• Dashboard- Accessible from anywhere with a web browser
- More user control over components than web portal
- Interface for Federated Querying, integrating Clinical, ECG and Imaging data
• Gadget- Lightweight - 200 MBs software
- “Load and Go” and you are a CVRG node
- Cross-platform compatibility
- Ability to run on a G3 phone
Demo - ECG GadgetDemo - ECG Gadget
Future WorkFuture Work
• Continue ontology development, more extensive testing- Conducting expert review now
• Enhance ECG gadget- better term search capabilities
- easier method for selecting annotation time location
• Integrate gadgets into CVRG dashboard
• Advertise to the community- target entire AHA Clinical & Basic Research Councils
• Collaborative Protege
• Continue ontology development, more extensive testing- Conducting expert review now
• Enhance ECG gadget- better term search capabilities
- easier method for selecting annotation time location
• Integrate gadgets into CVRG dashboard
• Advertise to the community- target entire AHA Clinical & Basic Research Councils
• Collaborative Protege