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Supplementary Figure 1 The GPCR DCAR-1 controls AMP gene expression following fungal infection and wounding. Normalized fluorescence ratio in wild type and dcar-1(tm2484) worms carrying the integrated array frIs7 (which contains the reporter transgenes nlp-29p::gfp and col-12p::DsRed) after infection by D. coniospora (left panel), wounding (middle left panel) and osmotic stress (middle right panel), and in wild type and dcar-1(tm2484) worms that in addition to frIs7 carry frIs30, an integrated transgene that encodes a constitutively active form of GPA-12 (GPA-12*; right panel). In all cases, the results are representative of at least three independent experiments with a minimum of 50 worms for each condition. Nature Immunology: doi:10.1038/ni.2957

Nature Immunology: doi:10.1038/ni · a, Part of the tyrosine metabolic pathway, showing the names and structures of intermediates and the names of selected candidate enzymes which

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Page 1: Nature Immunology: doi:10.1038/ni · a, Part of the tyrosine metabolic pathway, showing the names and structures of intermediates and the names of selected candidate enzymes which

Supplementary Figure 1 The GPCR DCAR-1 controls AMP gene expression following fungal infection and wounding. Normalized fluorescence ratio in wild type and dcar-1(tm2484) worms carrying the integrated array frIs7 (which contains the reportertransgenes nlp-29p::gfp and col-12p::DsRed) after infection by D. coniospora (left panel), wounding (middle left panel) and osmotic stress(middle right panel), and in wild type and dcar-1(tm2484) worms that in addition to frIs7 carry frIs30, an integrated transgene that encodes aconstitutively active form of GPA-12 (GPA-12*; right panel). In all cases, the results are representative of at least three independentexperiments with a minimum of 50 worms for each condition.

Nature Immunology: doi:10.1038/ni.2957

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Supplementary Figure 2

DCAR-1 acts in an epidermis-specific and cell-autonomous manner to regulate the induction of nlp-29 AMP gene.

a, Normalized fluorescence ratio of wild type worms carrying frIs7 treated with RNAi against control (sta-1, gfp, sta-2) or candidate genes(osm-9 and ocr-2) and infected or not. b, Normalized fluorescence ratio of worms carrying frIs7 in rde-1(ne219);col-19p::rde-1 worms that areresistant to RNAi except in the adult epidermis treated with RNAi against control genes (sta-1, gfp, sta-2) or dcar-1 and infected or not. Theresults are representative of at least three independent experiments with a minimum of 50 worms for each condition.

Nature Immunology: doi:10.1038/ni.2957

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Supplementary Figure 3

DCAR-1 acts in the epidermis to regulate nlp gene expression and resistance to infection with D. coniospora.

a, Survival of wild-type, dcar-1(tm2484), dcar-1;dcar-1p::dcar-1::gfp, dcar-1;col-12p::dcar-1::gfp and sra-6p::dcar-1::Venus worms afterinfection with D. coniospora. For the experiment shown here, n= 70, 65, 67, 67 and 70 respectively). The statistical significance of thedifferences between strains is shown below the graph (one-sided log rank test). b, c Quantitative RT-PCR analysis of the expression of genesin the nlp-29 cluster in wild-type, dcar-1(tm2484) and dcar-1;dcar-1p::dcar-1::gfp (b) or wild-type, dcar-1(tm2484), dcar-1;col-12p::dcar-1 anddcar-1;sra-6p::dcar-1 worms (c) after infection with D. coniospora. Data are from three independent experiments (average and SD). d,Survival of wild-type, dcar-1(tm2484), dcar-1;col-12p::dcar-1 and with sra-6p::dcar-1 worms after infection with D. coniospora. For theexperiment shown here, n= 62, 71, 55 and 65 respectively). The statistical significance of the difference between strains is shown below thegraph (one-sided log rank test). The difference in survival between the strains common to the experiments shown in a and d is linked to avariation in pathogenicity between different preparations of fungal spores used in experiments performed on different days.

Nature Immunology: doi:10.1038/ni.2957

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Supplementary Figure 4

DHCA triggers PMK-1-dependent gene expression in the epidermis.

Quantitative RT-PCR analysis of the expression of genes in the nlp-29 cluster in wild-type and pmk-1 worms treated with 5 mM DHCA for 2 h(a) or of the intestinal defence genes F49F1.6 and F57F4.4 (that require PMK-1 for their expression) and pgp-5, irg-1, irg-3 (that do notrequire PMK-1 for their expression)1,2 in wild-type and dcar-1(tm2484) worms after exposure to 5 mM DHCA for 2 h (b) or 5 h (c). Data arefrom three independent experiments (average and SD). The qualitative effect on nlp gene expression in the pmk-1 mutant mirrors that seenupon infection3, also with an apparent partial pmk-1-independent component for the induction of nlp-31 and nlp-34. Although exposure ofworms to DHCA was sufficient to increase epidermal AMP gene expression, pre-treatment of worms with it did not provide any measurableprotection against infection (results not shown).

1 - Estes, K. A., Dunbar, T. L., Powell, J. R., Ausubel, F. M. & Troemel, E. R. bZIP transcription factor zip-2 mediates an early response to Pseudomonasaeruginosa infection in Caenorhabditis elegans. Proc Natl Acad Sci U S A 107, 2153-2158 (2010).

2 - Dierking, K. et al. Unusual regulation of a STAT protein by an SLC6 family transporter in C. elegans epidermal innate immunity. Cell Host Microbe 9, 425-435 (2011).

3 - Pujol, N. et al. Distinct innate immune responses to infection and wounding in the C. elegans epidermis. Curr Biol 18, 481-489 (2008).

Nature Immunology: doi:10.1038/ni.2957

Page 5: Nature Immunology: doi:10.1038/ni · a, Part of the tyrosine metabolic pathway, showing the names and structures of intermediates and the names of selected candidate enzymes which

Supplementary Figure 5

Molecules that are structurally related to DHCA but do not trigger expression of the nlp-29p::gfp reporter gene.

Chemical structures of 3,4-hydroxy phenyl propionic acid (HPA), 4-hydroxyphenylpyruvic acid (HPPA), 3-4-dihydroxyphenyl lactic acid(DPLA), tyrosine, L-3,4-dihydroxyphenylalanine (DOPA), 3,4-dihydrobenzaldehyde (DHB), 3,4-dihydroxyphenylacetic acid (DOPAC), 3,4-dihyroxybenzoic acid (DHBA), and 3,4 dihydroxymandelic acid (DHMA), together with normalized fluorescence ratio of young adult wild typeworms carrying frIs7 treated for 2 h at 25°C with increasing concentrations of the indicated chemical. Data are representative of at least threeindependent experiments with a minimum of 50 worms for each condition. Compounds previously found to act as DCAR-1 ligands in aXenopus oocyte system, and their relative potency are indicated (*** medium; ** low; * weak). Tyrosine and DOPA were also tested and hadno effect4. As the epidermis of C. elegans is surrounded by a cuticle that is relatively impermeable to many compounds5-6, we cannot formallyexclude the possibility that lack of reporter gene expression in our assay results from a failure of a given compound to reach DCAR-1 in vivo.Nor can we exclude the possibility that different compounds have different pharmacokinetic properties.

4 - Aoki, R. et al. A seven-transmembrane receptor that mediates avoidance response to dihydrocaffeic acid, a water-soluble repellent in Caenorhabditiselegans. J Neurosci 31, 16603-16610 (2011).

5 - Partridge, F. A., Tearle, A. W., Gravato-Nobre, M. J., Schafer, W. R. & Hodgkin, J. The C. elegans glycosyltransferase BUS-8 has two distinct and essentialroles in epidermal morphogenesis. Dev Biol 317, 549-559 (2008).

6 - Zheng, S. Q., Ding, A. J., Li, G. P., Wu, G. S. & Luo, H. R. Drug absorption efficiency in Caenorhbditis elegans delivered by different methods. PLoS One 8,e56877 (2013).

Nature Immunology: doi:10.1038/ni.2957

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Supplementary Figure 6

Knocking down individual enzymes potentially involved in HPLA metabolism has no effect on nlp-29p::gfp expression.

a, Part of the tyrosine metabolic pathway, showing the names and structures of intermediates and the names of selected candidate enzymeswhich potentially catalyze each step. To the best of our knowledge, how the keto of HPPA is converted into the hydroxy function of HPLA hasnot been elucidated in any eukaryotic species. b, Normalized fluorescence ratio of young adult IG1502 rde-1(ne219) V; Is[wrt-2p::rde-1; myo-2p::rfp]; frIs7 IV worms that are resistant to RNAi except in the epidermis (infected or not, left panel) or dpy-10 worms (right panel) carryingfrIs7 treated with RNAi against control (sta-1, gfp and dcar-1) or candidate genes. Data are representative of at least two independentexperiments with a minimum of 50 worms for each condition.

Nature Immunology: doi:10.1038/ni.2957

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Supplementary Figure 7

Pathways leading to expression of nlp-29, highlighting the newly discovered roles of HPLA and DCAR-1.

Infection with D. coniospora and physical injury trigger up-regulation of the AMP nlp genes in the epidermis via the Gα protein GPA-12 thatacts upstream of the PKC∂ TPA-1, the TIR-domain adapter protein TIR-1 and a p38 MAPK cascade involving NSY-1, SEK-1 and PMK-1, aswell as the STAT transcription factor-like protein STA-2. We found that the level of HPLA, which is potentially derived from tyrosine, increasesupon infection. The precise site and mode of production of HPLA awaits elucidation; tyrosine is placed here at the level of the cuticle for thepurpose of illustration. HPLA triggers nlp-29 gene expression via its cognate receptor DCAR-1, which is expressed at the apical surface of theepidermal syncytium hyp7. DCAR-1 acts upstream of GPA-12, the p38 MAPK cassette and STA-2.

 

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Table S1: GPCR genes in the C. elegans genome  Gene  WB  IDa,b   Public  gene  namea,b  WBGene00000085   aex-­‐2  WBGene00020712   ckr-­‐1  WBGene00021439   ckr-­‐2  WBGene00013285   dct-­‐12  WBGene00001052   dop-­‐1  WBGene00001053   dop-­‐2  WBGene00020506   dop-­‐3  WBGene00016872   dop-­‐4  WBGene00011382   dop-­‐5  WBGene00016037   dop-­‐6  WBGene00001175   egl-­‐6  WBGene00001214   ego-­‐1  WBGene00001475   fmi-­‐1  WBGene00008239   fshr-­‐1  WBGene00001517   gar-­‐1  WBGene00001518   gar-­‐2  WBGene00001519   gar-­‐3  WBGene00021528   gbb-­‐1  WBGene00022675   gbb-­‐2  WBGene00013591   gcn-­‐2  WBGene00018798   gnrr-­‐1  WBGene00007614   gnrr-­‐2  WBGene00013871   gnrr-­‐3  WBGene00016570   gnrr-­‐4  WBGene00019224   gnrr-­‐5  WBGene00008736   gnrr-­‐6  WBGene00008737   gnrr-­‐7  WBGene00013642   gnrr-­‐8  WBGene00002251   lat-­‐1  WBGene00002252   lat-­‐2  WBGene00003232   mgl-­‐1  WBGene00003233   mgl-­‐2  WBGene00021152   mgl-­‐3  WBGene00017198   nhr-­‐36  WBGene00020015   nhr-­‐210  WBGene00016747   nmur-­‐1  WBGene00019616   nmur-­‐2  WBGene00017176   nmur-­‐3  

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WBGene00016265   nmur-­‐4  WBGene00003807   npr-­‐1  WBGene00003808   npr-­‐2  WBGene00007006   npr-­‐3  WBGene00013974   npr-­‐9  WBGene00008278   npr-­‐10  WBGene00016110   npr-­‐11  WBGene00020689   npr-­‐12  WBGene00013883   npr-­‐13  WBGene00012275   npr-­‐14  WBGene00012084   npr-­‐15  WBGene00006864   npr-­‐16  WBGene00015559   npr-­‐17  WBGene00008065   npr-­‐18  WBGene00015364   npr-­‐19  WBGene00011578   npr-­‐20  WBGene00006411   octr-­‐1  WBGene00003856   odr-­‐10  WBGene00005744   ops-­‐1  WBGene00015735   pdfr-­‐1  WBGene00007761   rad-­‐26  WBGene00004776   ser-­‐1  WBGene00004777   ser-­‐2  WBGene00004778   ser-­‐3  WBGene00004779   ser-­‐4  WBGene00008890   ser-­‐5  WBGene00021897   ser-­‐6  WBGene00004780   ser-­‐7  WBGene00010986   sprr-­‐1  WBGene00009629   sprr-­‐2  WBGene00022086   sprr-­‐3  WBGene00005027   sra-­‐1  WBGene00005028   sra-­‐2  WBGene00005029   sra-­‐3  WBGene00005030   sra-­‐4  WBGene00005032   sra-­‐6  WBGene00005033   sra-­‐7  WBGene00005034   sra-­‐8  WBGene00005035   sra-­‐9  WBGene00005036   sra-­‐10  WBGene00005037   sra-­‐11  

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WBGene00005038   sra-­‐12  WBGene00005039   sra-­‐13  WBGene00005040   sra-­‐14  WBGene00005043   sra-­‐17  WBGene00005044   sra-­‐18  WBGene00005046   sra-­‐20  WBGene00005047   sra-­‐21  WBGene00005048   sra-­‐22  WBGene00005049   sra-­‐23  WBGene00005050   sra-­‐24  WBGene00005051   sra-­‐25  WBGene00005052   sra-­‐26  WBGene00005053   sra-­‐27  WBGene00005054   sra-­‐28  WBGene00005055   sra-­‐29  WBGene00005056   sra-­‐30  WBGene00005057   sra-­‐31  WBGene00005058   sra-­‐32  WBGene00005059   sra-­‐33  WBGene00005060   sra-­‐34  WBGene00005061   sra-­‐35  WBGene00005062   sra-­‐36  WBGene00005063   sra-­‐37  WBGene00005064   sra-­‐38  WBGene00005065   sra-­‐39  WBGene00015446   srab-­‐1  WBGene00015447   srab-­‐2  WBGene00015448   srab-­‐3  WBGene00016363   srab-­‐4  WBGene00016479   srab-­‐6  WBGene00016480   srab-­‐7  WBGene00016475   srab-­‐9  WBGene00016476   srab-­‐10  WBGene00008128   srab-­‐12  WBGene00019091   srab-­‐13  WBGene00019999   srab-­‐14  WBGene00011701   srab-­‐17  WBGene00011702   srab-­‐18  WBGene00020607   srab-­‐20  WBGene00020623   srab-­‐21  WBGene00020608   srab-­‐22  

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WBGene00021488   srab-­‐23  WBGene00013417   srab-­‐24  WBGene00022807   srab-­‐25  WBGene00043059   srab-­‐26  WBGene00005066   srb-­‐1  WBGene00005067   srb-­‐2  WBGene00005068   srb-­‐3  WBGene00005070   srb-­‐5  WBGene00005071   srb-­‐6  WBGene00005072   srb-­‐7  WBGene00005073   srb-­‐8  WBGene00005074   srb-­‐9  WBGene00005076   srb-­‐11  WBGene00019027   srb-­‐12  WBGene00019028   srb-­‐13  WBGene00016743   srb-­‐15  WBGene00019025   srb-­‐16  WBGene00008489   srb-­‐17  WBGene00016925   srb-­‐18  WBGene00016928   srb-­‐19  WBGene00018058   srbc-­‐1  WBGene00015438   srbc-­‐2  WBGene00018053   srbc-­‐3  WBGene00020874   srbc-­‐5  WBGene00016472   srbc-­‐6  WBGene00015961   srbc-­‐7  WBGene00015962   srbc-­‐8  WBGene00015960   srbc-­‐9  WBGene00015959   srbc-­‐10  WBGene00015958   srbc-­‐11  WBGene00019559   srbc-­‐13  WBGene00011485   srbc-­‐14  WBGene00016688   srbc-­‐18  WBGene00016696   srbc-­‐19  WBGene00016689   srbc-­‐21  WBGene00016690   srbc-­‐22  WBGene00016691   srbc-­‐23  WBGene00016692   srbc-­‐24  WBGene00009567   srbc-­‐25  WBGene00009568   srbc-­‐26  WBGene00044100   srbc-­‐27  

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WBGene00015315   srbc-­‐29  WBGene00015316   srbc-­‐30  WBGene00044089   srbc-­‐31  WBGene00015317   srbc-­‐32  WBGene00021166   srbc-­‐42  WBGene00013908   srbc-­‐43  WBGene00013909   srbc-­‐44  WBGene00013910   srbc-­‐45  WBGene00010021   srbc-­‐49  WBGene00044091   srbc-­‐60  WBGene00011840   srbc-­‐62  WBGene00021477   srbc-­‐64  WBGene00020746   srbc-­‐66  WBGene00011506   srbc-­‐77  WBGene00005079   srd-­‐1  WBGene00005080   srd-­‐2  WBGene00005081   srd-­‐3  WBGene00005082   srd-­‐4  WBGene00005083   srd-­‐5  WBGene00005085   srd-­‐7  WBGene00005086   srd-­‐8  WBGene00005087   srd-­‐9  WBGene00005088   srd-­‐10  WBGene00005089   srd-­‐11  WBGene00005090   srd-­‐12  WBGene00005091   srd-­‐13  WBGene00005093   srd-­‐15  WBGene00005094   srd-­‐16  WBGene00005095   srd-­‐17  WBGene00005096   srd-­‐18  WBGene00005097   srd-­‐19  WBGene00005098   srd-­‐20  WBGene00005099   srd-­‐21  WBGene00005101   srd-­‐23  WBGene00005103   srd-­‐25  WBGene00005104   srd-­‐26  WBGene00005105   srd-­‐27  WBGene00005106   srd-­‐28  WBGene00005107   srd-­‐29  WBGene00005108   srd-­‐30  WBGene00005109   srd-­‐31  

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WBGene00005110   srd-­‐32  WBGene00005111   srd-­‐33  WBGene00005112   srd-­‐34  WBGene00005113   srd-­‐35  WBGene00005114   srd-­‐36  WBGene00005116   srd-­‐38  WBGene00005117   srd-­‐39  WBGene00005118   srd-­‐40  WBGene00005119   srd-­‐41  WBGene00005120   srd-­‐42  WBGene00005121   srd-­‐43  WBGene00005122   srd-­‐44  WBGene00005123   srd-­‐45  WBGene00005124   srd-­‐46  WBGene00005125   srd-­‐47  WBGene00005126   srd-­‐48  WBGene00005127   srd-­‐49  WBGene00005128   srd-­‐50  WBGene00005129   srd-­‐51  WBGene00005131   srd-­‐53  WBGene00005133   srd-­‐55  WBGene00005134   srd-­‐56  WBGene00005135   srd-­‐58  WBGene00005136   srd-­‐59  WBGene00005137   srd-­‐60  WBGene00005138   srd-­‐61  WBGene00005140   srd-­‐63  WBGene00005141   srd-­‐64  WBGene00005142   srd-­‐65  WBGene00005143   srd-­‐66  WBGene00005144   srd-­‐67  WBGene00005145   srd-­‐68  WBGene00005146   srd-­‐69  WBGene00005147   srd-­‐70  WBGene00005148   srd-­‐71  WBGene00021572   srd-­‐72  WBGene00021570   srd-­‐73  WBGene00007701   srd-­‐74  WBGene00044099   srd-­‐75  WBGene00005149   sre-­‐1  WBGene00005150   sre-­‐2  

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WBGene00011745   sre-­‐4  WBGene00015036   sre-­‐5  WBGene00009596   sre-­‐8  WBGene00015898   sre-­‐9  WBGene00015712   sre-­‐11  WBGene00020333   sre-­‐12  WBGene00012709   sre-­‐15  WBGene00012707   sre-­‐16  WBGene00008126   sre-­‐21  WBGene00013957   sre-­‐23  WBGene00016833   sre-­‐51  WBGene00016831   sre-­‐56  WBGene00005159   srg-­‐1  WBGene00005160   srg-­‐2  WBGene00005161   srg-­‐3  WBGene00005162   srg-­‐4  WBGene00005163   srg-­‐5  WBGene00005164   srg-­‐6  WBGene00005165   srg-­‐7  WBGene00005166   srg-­‐8  WBGene00005167   srg-­‐9  WBGene00005168   srg-­‐10  WBGene00005169   srg-­‐11  WBGene00005170   srg-­‐13  WBGene00005171   srg-­‐14  WBGene00005172   srg-­‐15  WBGene00005173   srg-­‐16  WBGene00005174   srg-­‐17  WBGene00005176   srg-­‐19  WBGene00005177   srg-­‐20  WBGene00005178   srg-­‐21  WBGene00005179   srg-­‐22  WBGene00005180   srg-­‐23  WBGene00005181   srg-­‐24  WBGene00005182   srg-­‐25  WBGene00005183   srg-­‐26  WBGene00005184   srg-­‐27  WBGene00005185   srg-­‐28  WBGene00005186   srg-­‐29  WBGene00005187   srg-­‐30  WBGene00005188   srg-­‐31  

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WBGene00005912   srx-­‐21  WBGene00005913   srx-­‐22  WBGene00005914   srx-­‐23  WBGene00005917   srx-­‐26  WBGene00005919   srx-­‐28  WBGene00005920   srx-­‐29  WBGene00005922   srx-­‐31  WBGene00005923   srx-­‐32  WBGene00005924   srx-­‐33  WBGene00005925   srx-­‐34  WBGene00005926   srx-­‐35  WBGene00005927   srx-­‐36  WBGene00005929   srx-­‐38  WBGene00005930   srx-­‐39  WBGene00005932   srx-­‐41  WBGene00005933   srx-­‐42  WBGene00005934   srx-­‐43  WBGene00005935   srx-­‐44  WBGene00005936   srx-­‐45  WBGene00005937   srx-­‐46  WBGene00005938   srx-­‐47  WBGene00005939   srx-­‐48  WBGene00005941   srx-­‐50  WBGene00005942   srx-­‐51  WBGene00005944   srx-­‐53  WBGene00005945   srx-­‐54  WBGene00005946   srx-­‐55  WBGene00005947   srx-­‐56  WBGene00005949   srx-­‐58  WBGene00005950   srx-­‐59  WBGene00005951   srx-­‐60  WBGene00005953   srx-­‐62  WBGene00005954   srx-­‐63  WBGene00005955   srx-­‐64  WBGene00005956   srx-­‐65  WBGene00005957   srx-­‐66  WBGene00005958   srx-­‐67  WBGene00005959   srx-­‐68  WBGene00005964   srx-­‐73  WBGene00005965   srx-­‐74  WBGene00005967   srx-­‐76  

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WBGene00005968   srx-­‐77  WBGene00005969   srx-­‐78  WBGene00005970   srx-­‐79  WBGene00005971   srx-­‐80  WBGene00005973   srx-­‐82  WBGene00005975   srx-­‐84  WBGene00005976   srx-­‐85  WBGene00005977   srx-­‐86  WBGene00005978   srx-­‐87  WBGene00005979   srx-­‐88  WBGene00005980   srx-­‐89  WBGene00005981   srx-­‐90  WBGene00005983   srx-­‐92  WBGene00005984   srx-­‐93  WBGene00005986   srx-­‐95  WBGene00005987   srx-­‐96  WBGene00005988   srx-­‐97  WBGene00005989   srx-­‐98  WBGene00005992   srx-­‐101  WBGene00005993   srx-­‐102  WBGene00005996   srx-­‐105  WBGene00005999   srx-­‐108  WBGene00006001   srx-­‐110  WBGene00006002   srx-­‐111  WBGene00006003   srx-­‐112  WBGene00006004   srx-­‐113  WBGene00006005   srx-­‐114  WBGene00006006   srx-­‐115  WBGene00006007   srx-­‐116  WBGene00006008   srx-­‐117  WBGene00006009   srx-­‐118  WBGene00006010   srx-­‐119  WBGene00006011   srx-­‐120  WBGene00006012   srx-­‐121  WBGene00006013   srx-­‐122  WBGene00006016   srx-­‐125  WBGene00006019   srx-­‐128  WBGene00006020   srx-­‐129  WBGene00006021   srx-­‐130  WBGene00006022   srx-­‐131  WBGene00006024   srx-­‐133  

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WBGene00006162   str-­‐111  WBGene00006163   str-­‐112  WBGene00006164   str-­‐113  WBGene00006165   str-­‐114  WBGene00006166   str-­‐115  WBGene00006167   str-­‐116  WBGene00006169   str-­‐118  WBGene00006170   str-­‐119  WBGene00006171   str-­‐120  WBGene00006172   str-­‐121  WBGene00006173   str-­‐122  WBGene00006174   str-­‐123  WBGene00006175   str-­‐124  WBGene00006176   str-­‐125  WBGene00006178   str-­‐129  WBGene00006179   str-­‐130  WBGene00006180   str-­‐131  WBGene00006182   str-­‐134  WBGene00006183   str-­‐135  WBGene00006184   str-­‐136  WBGene00006187   str-­‐138  WBGene00006186   str-­‐139  WBGene00006188   str-­‐140  WBGene00006189   str-­‐141  WBGene00006190   str-­‐143  WBGene00006191   str-­‐144  WBGene00006192   str-­‐145  WBGene00006193   str-­‐146  WBGene00006195   str-­‐148  WBGene00006196   str-­‐149  WBGene00006197   str-­‐150  WBGene00006198   str-­‐151  WBGene00006199   str-­‐153  WBGene00006200   str-­‐154  WBGene00006201   str-­‐155  WBGene00006202   str-­‐156  WBGene00006203   str-­‐158  WBGene00006204   str-­‐159  WBGene00006205   str-­‐160  WBGene00006206   str-­‐161  WBGene00006207   str-­‐162  

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WBGene00006259   str-­‐228  WBGene00006260   str-­‐229  WBGene00006261   str-­‐230  WBGene00006262   str-­‐231  WBGene00006263   str-­‐232  WBGene00006264   str-­‐233  WBGene00006265   str-­‐236  WBGene00006266   str-­‐238  WBGene00006268   str-­‐240  WBGene00006270   str-­‐243  WBGene00006271   str-­‐244  WBGene00006272   str-­‐245  WBGene00006273   str-­‐246  WBGene00006274   str-­‐247  WBGene00006275   str-­‐248  WBGene00006277   str-­‐250  WBGene00006278   str-­‐252  WBGene00006279   str-­‐253  WBGene00006280   str-­‐254  WBGene00006281   str-­‐255  WBGene00006282   str-­‐256  WBGene00006283   str-­‐257  WBGene00006284   str-­‐258  WBGene00006286   str-­‐260  WBGene00006287   str-­‐261  WBGene00006288   str-­‐262  WBGene00006289   str-­‐263  WBGene00007370   str-­‐264  WBGene00021228   str-­‐265  WBGene00018915   str-­‐267  WBGene00006428   tag-­‐49  WBGene00006459   tag-­‐89  WBGene00015398   tag-­‐293  WBGene00006576   tkr-­‐1  WBGene00017157   tyra-­‐2  WBGene00006475   tyra-­‐3  WBGene00014998   AH9.1  WBGene00015000   AH9.4  WBGene00015005   B0034.5  WBGene00015081   B0244.6  WBGene00015082   B0244.7  

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WBGene00007146   B0334.6  WBGene00007161   B0391.3  WBGene00015263   B0563.6  WBGene00015299   C01F1.4  WBGene00015409   C03H5.7  WBGene00015416   C04C3.6  WBGene00015417   C04C3.7  WBGene00007360   C06B3.1  WBGene00007379   C06C6.1  WBGene00007395   C06H5.7  WBGene00007483   C09F12.3  WBGene00007528   C11H1.2  WBGene00007595   C15A7.2  WBGene00015799   C15H9.3  WBGene00007635   C16D6.2  WBGene00015921   C17H11.1  WBGene00007664   C18B12.2  WBGene00044004   C24A8.6  WBGene00016044   C24B5.1  WBGene00016089   C25B8.5  WBGene00016090   C25B8.7  WBGene00045413   C25F9.13  WBGene00016149   C26F1.6  WBGene00016222   C29F9.8  WBGene00016223   C29F9.9  WBGene00016246   C30B5.5  WBGene00016248   C30B5.7  WBGene00044179   C30G7.5  WBGene00007842   C31E10.1  WBGene00007908   C34B4.3  WBGene00016428   C35A11.1  WBGene00007951   C35A5.7  WBGene00008021   C39B10.1  WBGene00008060   C41G6.16  WBGene00008079   C44B9.2  WBGene00044087   C45H4.18  WBGene00016708   C46E10.2  WBGene00016761   C49A9.7  WBGene00016842   C50F7.1  WBGene00016858   C50H11.13  WBGene00016909   C54A12.2  

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WBGene00008308   C54E10.3  WBGene00008321   C55A1.1  WBGene00008329   C55A1.15  WBGene00008342   C56A3.3  WBGene00016984   C56G3.1  WBGene00017015   D1014.2  WBGene00017038   D1069.4  WBGene00014300   D2023.1  WBGene00008481   E04D5.2  WBGene00008550   F07B10.4  WBGene00077514   F07B10.7  WBGene00017278   F09C12.6  WBGene00077493   F09C6.16  WBGene00008637   F10A3.12  WBGene00008638   F10A3.16  WBGene00008635   F10A3.7  WBGene00017338   F10D7.1  WBGene00008808   F14F4.1  WBGene00008885   F16C3.1  WBGene00017566   F18E3.10  WBGene00017661   F21C10.12  WBGene00009046   F22B8.3  WBGene00017779   F25E2.1  WBGene00009194   F27E5.5  WBGene00044027   F27E5.8  WBGene00009278   F31B9.1  WBGene00009333   F32D8.10  WBGene00018067   F35G8.1  WBGene00018073   F35H10.10  WBGene00018089   F36D4.4  WBGene00018179   F38E1.6  WBGene00009558   F39B2.8  WBGene00018191   F39B3.2  WBGene00018222   F40A3.7  WBGene00077531   F40G9.15  WBGene00009619   F41E7.3  WBGene00018312   F41H8.1  WBGene00018313   F41H8.2  WBGene00018344   F42C5.2  WBGene00044031   F49C5.9  WBGene00009931   F52D10.4  

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WBGene00018728   F53A9.5  WBGene00009965   F53B7.2  WBGene00010058   F54E4.2  WBGene00018886   F55E10.7  WBGene00010179   F57A8.4  WBGene00010191   F57B7.1  WBGene00019012   F57C9.6  WBGene00044048   F57G9.7  WBGene00019019   F57H12.4  WBGene00019098   F59B1.4  WBGene00019099   F59B1.6  WBGene00010315   F59B2.13  WBGene00010329   F59D12.1  WBGene00010375   H09F14.1  WBGene00019183   H10E21.2  WBGene00019231   H23L24.4  WBGene00019262   H34P18.1  WBGene00010442   JC8.12  WBGene00019287   K01A12.3  WBGene00010448   K01A6.6  WBGene00045100   K03D3.14  WBGene00019367   K03H6.1  WBGene00019370   K03H6.5  WBGene00010591   K05D4.9  WBGene00019448   K06C4.17  WBGene00019444   K06C4.8  WBGene00019445   K06C4.9  WBGene00019496   K07E8.5  WBGene00010634   K07F5.6  WBGene00019518   K08B5.1  WBGene00019523   K08D9.1  WBGene00019560   K09C6.6  WBGene00010735   K10C8.2  WBGene00019625   K10C9.4  WBGene00077679   K11E4.6  WBGene00010820   M01G12.6  WBGene00189957   M03F8.7  WBGene00010979   R02D5.6  WBGene00020086   R106.2  WBGene00011211   R10E8.5  WBGene00020008   R11F4.2  

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WBGene00044045   R11G10.3  WBGene00020023   R12C12.3  WBGene00194726   R13A5.15  WBGene00020056   R13D11.1  WBGene00020057   R13D11.3  WBGene00020069   R13H7.2  WBGene00011341   T01G5.6  WBGene00011372   T02D1.6  WBGene00011381   T02E9.1  WBGene00011395   T03E6.2  WBGene00011397   T03E6.8  WBGene00045356   T03E6.9  WBGene00011441   T04F8.2  WBGene00011518   T06C12.11  WBGene00011534   T06E4.7  WBGene00011582   T07D10.2  WBGene00020319   T07F8.2  WBGene00011686   T10C6.2  WBGene00020420   T10E10.3  WBGene00011693   T10G3.2  WBGene00011695   T10G3.4  WBGene00020424   T10H9.1  WBGene00011709   T11F9.1  WBGene00011728   T12A7.7  WBGene00011765   T14C1.1  WBGene00020523   T15B7.11  WBGene00020524   T15B7.12  WBGene00020525   T15B7.13  WBGene00020586   T19F4.1  WBGene00011878   T21B4.4  WBGene00011922   T22C8.1  WBGene00020727   T23C6.5  WBGene00011947   T23F1.3  WBGene00012072   T26H8.4  WBGene00077588   T26H8.5  WBGene00194821   T27B2.1  WBGene00012089   T27E7.4  WBGene00012090   T27E7.5  WBGene00012093   T27E7.9  WBGene00012147   VC27A7L.1  WBGene00194896   W02H5.11  

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WBGene00012283   W05H5.1  WBGene00012349   W08G11.5  WBGene00021124   W10C4.1  WBGene00013645   Y105C5B.1  WBGene00013782   Y116A8B.5  WBGene00021216   Y19D10A.1  WBGene00021217   Y19D10A.2  WBGene00021275   Y23H5B.4  WBGene00045303   Y27F2A.10  WBGene00045304   Y27F2A.11  WBGene00021310   Y32H12A.1  WBGene00021328   Y34D9A.2  WBGene00012575   Y37H2C.4  WBGene00021490   Y40B10A.5  WBGene00021510   Y41D4A.8  WBGene00021524   Y41D4B.24  WBGene00021573   Y45G12C.10  WBGene00021569   Y45G12C.6  WBGene00012939   Y47D3B.1  WBGene00012962   Y48A6B.1  WBGene00012993   Y48C3A.11  WBGene00013187   Y54E2A.1  WBGene00013222   Y54G11B.1  WBGene00043061   Y54G2A.38  WBGene00044460   Y55F3C.10  WBGene00013288   Y57A10C.10  WBGene00013286   Y57A10C.8  WBGene00013335   Y57G11C.46  WBGene00021983   Y58G8A.4  WBGene00021984   Y59C2A.1  WBGene00022004   Y59H11AL.1  WBGene00013389   Y62H9A.1  WBGene00013398   Y62H9A.10  WBGene00012397   Y6E2A.1  WBGene00013490   Y70C5A.2  WBGene00077464   Y70C5B.2  WBGene00013496   Y70D2A.1  WBGene00013572   Y75B12B.10  WBGene00013551   Y75B8A.16  WBGene00044464   Y77E11A.16  WBGene00021184   Y9C9A.17  

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WBGene00021177   Y9C9A.5  WBGene00021178   Y9C9A.8  WBGene00022522   ZC132.3  WBGene00022527   ZC132.9  WBGene00022604   ZC404.10  WBGene00022605   ZC404.11  WBGene00022606   ZC404.13  WBGene00077562   ZC443.7  WBGene00013848   ZC84.4  WBGene00044551   ZK105.8  WBGene00014248   ZK1307.7  WBGene00022735   ZK418.6  WBGene00022736   ZK418.7  WBGene00014035   ZK643.3  WBGene00022811   ZK721.4  WBGene00022824   ZK813.5    a  Gene  identifiers  from  WS220.    

b  Genes  targeted  by  one  or  more  RNAi  clone  are  highlighted  in  green  

 

Notes:    

 (i)  Some  gene  families  were  incompletely  annotated  and  non-­‐contiguously  named  in  

the  WS220  release.  For  example,  there  were  only  15  named  members  of  the  npr  

family.  In  release  WS230,  there  were  20  members,  npr-­‐1  to  npr-­‐20.  By  WS232,  the  

number  had  increased  to  33  (npr-­‐1  to  npr-­‐33).  

(ii)  Some  gene  families  are  non-­‐contiguously  named  in  this  list  for  other  reasons.  For  

example,  srab-­‐5  is  predicted  to  be  a  pseudogene,  so  is  not  included  in  the  list.  

(iii)  Some  gene  families  were  incompletely  annotated  with  regards  INTERPRO  

domains  in  the  WS220  release.  For  example,  srab-­‐8  encodes  a  protein  with  the  

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INTERPRO:IPR019408  (7TM_GPCR_serpentine_rcpt_Srab)  domain  but  this  

information  is  not  in  Wormbase  release  WS220.  

(iv)  The  public  gene  names  dcar-­‐1  and  frpr-­‐11  do  not  appear  in  the  table  as  they  were  

assigned  to  WBGene00007395  and  WBGene00019444,  respectively,  subsequent  to  

the  release  WS220.  

 

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