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MAGNETIC RESONANCE IMAGING
Methods and Applications in Neuroscience Research
Craig Ferris, Ph.D. Center for Translational NeuroImaging
Department of Psychology Northeastern University
Magnetic Resonance Imaging “Then & Now”
Damadian et al., Science 194:1431,’76 9.4T scanner
Kramer et al., Neuroradiology 21:239 ’81 - Lauterbur
High Resolution Magnetic Resonance Image of Marmoset Monkey Brain
The Neuroscience Toolbox for In Vivo Studies
Adapted from Huettel, Song and McCarthy, In: Functional Magnetic Resonance Imaging, 2004 Sinauer Associates Inc.
Animal fMRI ≥4.7T
Electromagnetic Waves
“The energy of MRI”
E B
C
E B C
E - electric field B - magnetic field C - speed of light
1sec
t = .5 sec
frequency (f) = 1/t f = 1/.5 = 2 cycles/sec = 2 Hertz
λ = 1 m
C = λf
Electromagne8c Spectrum
radiowaves microwaves visible light
X-‐rays, gamma rays
Frequency (Hz)
Energy (eV)
MR imaging
103 104
1 kHz
105 106 107 108 109
100 MHz 1 MHz
1013 1016 1014 1015
visual imaging
1017 1018 1019 1020 1021 1022
X-‐ray imaging
106 103 100 10-‐5 10-‐8 10-‐11
1 MeV 1 keV
Wavelength (m) 103 100 10-‐6 10-‐9 10-‐12
1 km 1 m 1 µ 1 nm 1 pm
Superconducting Magnets
• Generate external magnetic field - B0 • Field strength between 1.5 – 11.7 Tesla (T) • Operate near absolute zero temperature
Safety ferromagnetic projectiles
radiofrequency fields and specific absorption ratio (SAR)
static magnetic fringe field “5-guass line”
gradient coils and current induction Note: high performance gradients with
high rise times (T/s) can induce currents in body tissue. FDA limits scanners to 6.0T/sec
Note: the electrical component of a transmitted RF pulse can heat tissue. The SAR of RF energy deposited is measured in watts/kilogram (W/kg). FDA limits -
biological effects Note: there are no know adverse bio-
effects from the static fringe field – including pregnancy
“Proton Imaging” Manipulating Hydrogen Atoms
• MRI is non-invasive and uses the protons from mobil hydrogen in water and fat to generate signals
• The hydrogen nucleus spins creating a local magnetic field causing the charged nucleus to act like little magnet aligning in BO.
• Over time (2-3 sec) protons come to equilibrium or net magnetization MO
• The time constant that defines the rate
of equilibrium is T1
Hydrogen Protons “Wobble”
• Not only does the nucleus of the hydrogen atom spin like a top but it also precesses or “wobbles.”
• The precessional frequency is defined by the Larmor Equation f = γ BO
• γ = 42.6 MHz/T for hydrogen • When the field strength
increases so does the precessional frequency
Flipping Hydrogen Protons to get MR Signal
• An RF pulse with the same precessional frequency can “flip” the proton into the transverse plane
• Protons precess around the transverse plane giving off an oscillating signal
• Protons are initially in phase but
rapdily dephase and signal decays in 20 to 30 msec.
• The time constant that defines the rate of decay is T2
• Spectroscopy
• Quantitative Anatomy
• Angiography
• Diffusion Weighted Tensor Imaging
• Diffusion/Perfusion Imaging
• Function Imaging CBF – cerebral blood flow CBV – cerebral blood volume BOLD imaging
What can a neuroscientist learn about the brain using a magnet?
Ferris et al., J Neuroendocrinology 18:307, 2006
anes
thes
ia
awak
e
baseline
saline vehicle
5 min post
EtOH
15 min post
EtOH
baseline
saline vehicle
5 min post
EtOH
15 min post
EtOH
Applications • phenotyping transgenic mice • developmental biology • neurotoxicology
MR Spectroscopy: Quantifying Brain Chemistry
Brain EtOH Levels
Angiography
normal rat cerebral vasculature
Applications • ischemic and hemorrhagic stroke • tumor research • biomarkers of disease progression
medial cerebral artery occlusion
Courtesy of Bruker BioiSpin, 4.7T
Diffusion Imaging
Application
• Ischemic stroke
occlusion of medial cerebral artery
MR angiography T2-weighted image Diffusion-weighted
image (DWI)
infarcted area infarcted area
Diffusion Weighted Tensor Imaging
Applications • brain myelination and
development • neurodegeneration • in vivo neuropathology
DT maps of marmoset
Transla:onal NeuroImaging
§ transgenics § inbred strains § behavioral phenotypes
§ development
§ small size
Marmoset Monkeys Mice and Rats
§ monogamous
§ twins § development
§ small size
Stimulation Paradigms “How do you talk to animal in a magnet?”
• Odors
• Visual Images
• Tactile Stimulation
• Drug Challenges
• Complex Environmental Cues “vivarium”
Predatory Conditioned Fear
sable ferret rat
Functional MRI in Awake Animals Set-up -animals are lightly anesthetized with 3% isoflurane, placed in the holder, allowed to awaken and moved to scanner.
Computer Console
7.0T MR Scanner
Set-up takes ca 10 min to start of image acquisition.
Custom Radiofrequency Technology
restrainer
head coil Quad transmit/receive volume coil built into the head holder
Optimal signal-to-noise and field homogeneity
Spatial and Temporal Resolution Twenty-two 1 mm thick slices of the brain are acquired in 6 sec with a HASTE pulse sequence (Half Fourier Acquisition Single Shot Turbo Spin Echo)
Field of View: 3.0 cm
Data Matrix: 96 x 96
voxel size
312 µm2 X 1000 µm
sagittal view
axial view
A measure of signal intensity is collected in each of ca. 15,000 voxels every six seconds.
Basal condition
BLO
OD
FLO
WΔ BOLD SIGNAL
4 Sec
HbFe2+O2
HbFe2+O2
HbFe2+
HbFe2+
O2
Initial increase in metabolism
Reactive hyperemia
Ogawa et al., MRM 14: 68-78 1990
O2
Functional Imaging Using BOLD BOLD Signal
Blood Oxygen Level Dependent
Functional Imaging Using BOLD
BOLD Imaging: A Critical Tool for Studying Brain Function
• Since Ogawa’s original paper there have been 5,408 publications on BOLD imaging.
• Only 234 have used animals – why?
They don’t sit s:ll.
Acclimating Animals to the Imaging Protocol
Physiology and Stress Hormone
King et al., J Neurosci Methods 148:154-60; 2005
Atlas
Three Dimensional Segmented Atlases
Registration “Group Statistics”
Segmentation
Activation Maps
3D Visualization
GUI
Quantifying MRI Signal – Volume of Activation & Percent Change
Marmoset atlas has 234 brain regions
-2
0
2
4
6
8
10
12
60 0 60 120 180 240 300
% C
hang
e in
BO
LD S
igna
l
% C
hang
e in
BO
LD S
igna
l
Time (sec) Time (sec)
Hippocampus Cortex68 µg/kg cort 68 µg/kg cort17 µg/kg cort 17 µg/kg cortvehicle vehicle
Bar Graphs Showing Volume of Activation Between Groups
Time Course Plots Showing BOLD Signal Change Between Groups
Rat atlas has 174 brain regions
Mouse atlas has 140 brain
regions
Vole atlas has 140 brain
regions
Nursing
a
b c
Volume coil
Body tube opening exposes the ventrum
Weigh boat cradle padded with gauze 4 pups inside cradle
under the ventrum
Can we image the nursing brain?
Yes …
Brain ac:vity suggests suckling is a rewarding experience.
• Mesocor:colimbic dopaminergic pathways are ac:vated.
• Previous studies show suckling has many of the proper:es of addic:ve drugs. Suckling mo:vates bar pressing for pups and condi:oned place preference.
(Fleming, Spear, and Morrell labs)
Ferris et al., J Neurosci 25:149-‐156 (2005)
Is motherhood more rewarding than cocaine?
… it would seem so.
How do you interpret these findings ?
• The salience of reinforcing stimuli is state dependent.
• The maternal brain has evolved to favor the reinforcing experience of pup suckling over other hedonic stimuli.
• Can this notion of prioritizing one hedonic stimulus over another in the context of evolution and survival be tested for another behavior like sex?
Pain
5 min baseline 10 min capsaicin or formalin stimulation
50 40 90 60 110
100
120
70 10 20 30 80 150 image acquisition (10/min)
130
140
150
Data Analysis for Pain
Acute Pain – Experimental Design
Constructing a Template of the Pain Neural Circuit
Constructing a Template of the Habenular Neural Circuit “Imaging the anticipation and prediction of aversive
events.”
Negative BOLD Over Time: Engagement of the Diffuse Noxious Inhibitory Control
System?
DNIC provides a long lasting, inhibitory modulation of dorsal horn and trigeminal nuclear activity involved in transmitting nociceptive signals to the pain neural circuit
Dissociation of Cortex and Basal Ganglia
Does the Brain Process Pain Under Anesthesia?
General anesthetics activate a nociceptive ion channel to enhance pain and inflammation
Jose´ A. Matta*, Paul M. Cornett*, Rosa L. Miyares*, Ken Abe†, Niaz Sahibzada*, and Gerard P. Ahern*‡
PNAS June 24, 2008 vol. 105 General anesthetics (GAs) have transformed surgery through their actions to depress the central nervous system and blunt the perception of surgical insults. Counterintuitively, many of these agents activate peripheral nociceptive neurons. However, the underlying mechanisms and significance of these effects have not been explored. Here, we show that clinical concentrations of noxious i.v. and inhalation GAs excite sensory neurons by selectively activating TRPA1, a key ion channel in the pain pathway. Further, these GAs induce pain-related responses in mice that are abolished in TRPA1-null animals. Significantly, TRPA1-dependent neurogenic inflammation is greater in mice anesthetized with pungent compared with nonpungent anesthetics. Thus, our results show that TRPA1 is essential for sensing noxious GAs. The pronociceptive effects of GAs combined with surgical tissue damage could lead to a paradoxical increase in postoperative pain and inflammation.
While general anesthetics suppress CNS activity and induce unconsciousness
through activation of GABA receptors, do they suppress pain by enhancing pain?
Question?
Is pain a remedy for pain?
Thanks Praveen Kulkarni Thom Barchet William Kenkel Seth Finklestein Martha Shenton Zora Kinkinis Mark Nedelman
Awake Animal Imaging Has Its Limits
Thank You