Limonoids - Biosynthesis, Biochemistry and Analyis

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    BITTERNESS IN CITRUS

    FRUIT-THE BIOCHEMISTRY,ANALYSIS AND

    APPLICATIONS.

    MANPREET KAUR

    SAINI

    21th march 2012

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    CONTENTS OF PRESENTATION

    BIOSYNTHESIS & BIOCHEMISTRY OF LIMONOIDS

    EXTRACTION AND QUALITATIVE & QUANTITATIVE ANALYSIS OF CITRUS

    BITTER PRINCIPLE.

    GENE EXPRESSION AND TRANSCRIPTOME STUDIES

    CLONING AND CREATION OF TRANSGENIC VARIETIES

    APPLICATION OF THE BITTER PRINCIPLE

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    PRIMARY AND SECONDARY METABOLITESMetabolites- compounds synthesized by organisms using enzyme-

    mediated chemical reactions called metabolic pathways

    PRIMARY METABOLITES

    Essential to growth and development.

    Present in all plants as are components or

    products of fundamental metabolic

    pathways or cycles.

    SECONDARY METABOLITES

    Not Essential to growth and development.

    colored, fragrant, or flavorful compounds

    typically mediate the interaction of plants

    with other organisms.

    EXAMPLES OF PRIMARY

    METABOLITES

    Energy rich fuel molecules, such as

    sucrose and starch,Structural components such as cellulose,

    informational molecules such a DNA

    and RNA

    Pigments such as chlorophyll.

    EXAMPLES OF SECONDARY

    METABOLITES

    Alkaloids such as caffeine, nicotine, etc.

    Terpenoids such as monoterpenes,diterpenes, triterpenes like Limonin and

    tetraterpenes.

    Phenolics such as flavonoids like naringin

    and anthocyanins etc.

    The main focus of this presentation will be triterpenoids mainly the Limonoids.

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    INTRODUCTION TO BITTER PRINCIPLES

    Kinnow mandarin, a hybrid of

    Citrus nobilis and Citrus

    deliciosa is considered one of

    the major crops of Punjab.

    But processing of Kinnow juice

    faced formidable problems in

    terms of bitterness and

    delayed bitterness thusaffecting its consumer

    acceptability.

    Biochemical basis of bitterness

    in kinnow:

    bitterness due to flavonoids e.g.

    naringin species related topumello. Threshold of bitterness

    is 50 ppm.

    delayed bitterness due to

    limonoids e.g. limonin.

    Threshold of bitterness is 6

    ppm.

    Critical reviews in

    biotechnology(199

    6)

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    CITRUS BITTER PRINCIPLES IN DIFFERENT

    PART OF THE FRUIT

    Structure of citrus fruit showing concentration of limonoids and

    flavonoids in different parts.

    F- Flavedo, A- Albedo, SM-segment membrane, S- seeds, J- juiceKasetsart J. (Nat. Sci.) 43 : 28 - 36 (2009)

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    BIOSYNTHESIS OF

    LIMONOIDS

    The Plant Cell, Vol. 7,

    1015-1026, July (1995)

    Acetyl Co A thiolase HMG Co A synthase

    HMG Co A reductase

    Mevalonate

    kinase

    PhosphoMevalonate

    kinaseMVAP,Decarboxylase

    GPP synthase

    IPP Isomerase

    FPP synthase

    GGPP synthase

    squalene

    synthase

    Terpene synthases

    Prenyltransferase

    s

    MEVALONIC ACID PATHWAY AND TERPENOID SKELETON BIOSYNTHESIS( HMG Co A- 3 hydroxy 5 methyl glutaryl Co A, MVAP-Phosphomevalonate,MVAPP- 5-pyro Phosphomevalonate, IPP-Isopentyl Pyrophosphate, DMAPP-Dimethylallylpyrophosphate,

    GPP-geranyl pyrophosphate, FPP- franesyl pyrophosphate, GGPP- geranyl geranyl pyrophosphate)

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    BIOSYNTHESIS CONT.

    SQUALENE

    DEACETYLNOMILINIC ACIDNOMILIN

    DEACETYLNOMILIN METHYL DEACETYLNOMILIC ACID

    OBACUNONE

    ICHANGENSIN(KETO) CALAMIN CYCLOCALAMIN

    OBACUNOIC ACID

    ICHANGIN ICHANGENSIN(KETAL)

    LARL

    LIMONIN DEOXYLIMONIN DEOXYLIMONIC ACID

    LIMONOL

    17 -D GLUCOPURANOSIDE

    NOMILIN ACEYL

    LYASE

    HYDROLASE

    DEHYDROGENASE

    UDP-D-GLUCOSE:

    LIMONOID GLUCOSYL

    TRANSFERASE

    Biol. Pharm. Bull. 29(2) 191201 (2006)

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    BIOCHEMISTRY OF LIMONOIDS IN CITRUS

    .

    A group of highly oxygenated tetracyclic

    triterpenoids in Rutaceae and Meliaceae

    plant families causes delayed bitterness in

    citrus and is a secondary metabolite.

    Two forms in citrus:

    1. Limonoid aglycones (LA) -- >50 isolated

    from the Rutaceae (36 from Citrus & related

    genera)

    2. Limonoid glucosides (LG) -- 17 isolated

    3. LARL and NARL- the precursors for

    limonoid synthesis can also be considered

    Relation between LA and LG1. LA: bitter, insoluble in water

    2. LG: non-bitter, water-soluble

    3. LA glucosidated to LG-during fruit maturation

    and this is known as natural debittering.

    Food review. Int, 12(4),(1996).

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    LIMONOID AGLCONES J. Agric. Food Chem., Vol.55, No. 21, 2007 Review s

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    LIMONOID GLUCOSIDES AND SYNTHETIC LIMONIN CARBOXYMETHOXIME

    J. Agric. Food Chem., Vol.

    55, No. 21, 2007 Review s

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    SITES OF BIOSYNTHESIS OF LIMONOIDS

    3 forms of limonoids

    monolactone dilactone glucosides

    Mature peel and fleshtissues In leavesand seeds

    Limonin glucoside Nomilin glucoside

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    ACCUMULATION OF LIMONOIDS

    acetate, mevalonate, or farnesylpyrophosphate

    Nomilin in stem phloem region

    translocated to fruit

    tissues, peels, seeds

    and leaves

    other limonoids

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    MAJOR BIOSYNTHETIC GROUPS

    Four groups of Limonoid Aglycones

    1. Limonin group

    2. Calamin group

    3. Ichangensin group

    4. 7-acetate limonoid group

    Biosynthetic pathways of each group ofthese limonoids have been elucidated:

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    THE LIMONIN BIOSYNTHETIC

    GROUP in all citrus species, citrus hybrids and many non citrus members of family

    rutaceae.

    Limonin, nomilin, deacetylnomilin, Ichangin and obacunone are the major

    limonoids

    Food review. Int, 12(4),(1996).

    BIOSYNTHETIC PATHWAYS OF LIMONOIDS: THE LIMONIN GROUP

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    CALAMIN BIOSYNTHETIC GROUP Found only in tissues of Fortunella and its hybrids like calamondin. And major limonoids

    include calamin, retrocalamin, methyl iso-obacunoate diosphenol, 6-keto-7b-

    deacetylnomilol and 6-keto-7b-nomilon.

    6-keto-7b-nomilon contains structural features of both calamin and limonin groups-

    represent a biosynthetic link between them.

    Food review. Int, 12(4),(1996).

    BIOSYNTHETIC PATHWAYS OF LIMONOIDS: THE CALAMIN GROUP

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    GROUP Found in tissues of Citrus ichangenesis and its hybrids Yuzu, Sudachi, Kabosu,Hanayu

    and Ichang lemon, ichangenesin, deacetylnomilin, and deacetylnomilinic acid being the

    major compounds.

    present as ketal and keto group in chloroform solution but as ketal only in citrus.

    Nomilin converted to deacetylnomilin by nomilin deacetylase, enzyme not found in any

    other citrus species.

    Food review. Int, 12(4),(1996).

    Nomilin

    deacetlylase

    BIOSYNTHETIC PATHWAYS OF LIMONOIDS: THE ICHANGENSIN GROUP

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    THE 7-ACETATE LIMONOID BIOSYNTHETIC

    GROUP Found only in tissues of Poncirus and its hybrids

    This limonoid group includes 7a-obacunol, limonyl acetate [20] and 7a-obacunyl

    acetate..

    Food review. Int, 12(4),(1996).BIOSYNTHETIC PATHWAYS OF LIMONOIDS: THE 7-ACETATE lIMONOID GROUP

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    DELAYED BITTERNESS

    Most citrus fruits do not taste bitter if eaten fresh or if freshly squeezed juiceis consumed but within a few hours after juice extraction, the juice becomes

    bitter. This phenomenon is generally referred to as delayed bitterness.

    The two classes of chemical compound namely flavonoids and limonoids

    were found responsible for bitterness in citrus juices. But there is a difference

    between flavonoid and limonoid bitterness.

    The fruits containing high flavonoids are bitter even when consumed as

    fresh. The peel (rind) of the citrus fruit contain very high amount of flavonoids

    like naringin, neohesperidine etc. making it highly bitter.

    The limonoids are present in the form of non-bitter compound (limnoate - A-

    ring lactone), which is converted to bitter limonin and other bitter limonoids in

    the presence of enzyme limonoate-D-ring lactone hydrolase on storage.

    Hence the fresh citrus juice does not taste bitter but turns highly bitter on

    storage.

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    FACTORS RESPONSIBLE FOR

    DELAYED BITTERNESS

    Cultivar

    Location

    Maturation time

    Storage temperature

    Acidic medium

    Field Freeze injure

    Mechanical damage

    Initiates conversion of LARL to bitter

    limonoid aglycone

    Promotes enzme activity

    With more time bitterness decreases.

    Less the storage temperature, less the

    bitterness as enzyme activity reduced

    Different varieties has different level of

    bitterness like in valencia orange and navel

    orange.

    Different temperature conditions affect the

    bitternesss content of same fruit.

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    MECHANISM OF DELAYED

    BITTERNESS

    Food review. Int, 12(4),(1996).

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    NATURAL LIMONOID DEBITTERING PROCESS

    Limonin bitterness occurs in early to mid season harvested fruits only

    Natural debittering process occurs when in late stages of fruit growth and

    maturation limonoid aglycones were converted to their respectiveglucosides .

    Limonoid glucosides contain one D- glucose molecule attached to the C-17

    position of each corresponding aglycone via a beta- glucosidic linkage such

    as limonin 17- beta D- glucopyranoside.

    Enzyme involved is UDP-D_glucose transferase, isolated from citrus albedo

    tissues, found only in mature fruit tissues and seeds .

    Food review. Int, 12(4),(1996).

    ENZYMES INVOLVED IN BIOSYNTHESIS AND BIODEGRADATION

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    ENZYMES INVOLVED IN BIOSYNTHESIS AND BIODEGRADATION

    OF LIMONOIDS IN CITRUS

    ENZYME GROUP NAME OF ENZYME SITE OF ACTION FUNCTIONS

    E-1 Various enzymes ofterpenoid pathway likethiolase, synthase,

    reductase, kinase,

    isomerase, etc.

    phloem region ofcitrus stem tissues biosynthesis of nomilinfrom acetate and

    mevalonate

    E-2 Enzymes like lyase,hydrolase,

    dehydrogenase,

    esterase, etc.

    all citrus tissues

    including leaves,

    stems, fruit tissues,

    fruit peels and seeds

    biosynthesis of other

    limonoids from Nomilin.

    E-3 limonoid UDP- D-glucopyranoside

    tranferase

    seeds convert monolactones

    to glucosides during

    late stages of fruit

    growth and maturation

    E-4 limonoid D- ring lactone

    hydrolase

    seeds lactonization of the D-

    ringconverts monolactones

    to dilactones

    E-5 limonoid 17- beta-D-glucopyranoside beta-

    glucosidase

    dormant seeds and

    germinating seeds

    limonoid biodegradation

    catalyzes the hydrolysis

    of limonoid glucosides

    and liberates limonoids

    and glucoseFood review. Int, 12(4),(1996)

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    DEBITTRING METHODSDEBITTERING METHODS

    column and batch

    methods using

    adsorbent and

    ion exchange

    resins

    blend bitter

    juice with non

    bitter juice,

    diluting out the

    bitter taste

    Creating new

    citrus varieties

    through

    Genetic

    engineering

    Transgenic citrus varieties free from limoninbitterness

    Three specific target enzymes

    Insertion of one of the three gene

    codings

    Yields nonbitter fruits in

    transgenic plants

    Limonoid UDP-D-glucose

    transferase

    Limonoate Dehydrogenase

    Nomilin deacetylase

    Food review. Int, 12(4),(1996)

    C t

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    Cont

    Nomilin deacetylaseLimonoid UDP-D-glucose

    transferaseLimonoate Dehydrogenase

    Converts limonoid aglycones

    to glucosides

    Convert limonin to nonbitter

    limonoids

    Convert nomilin to

    deacetylnomilin

    Enhancement of enzyme

    activity through genetic

    Engineering

    reduces aglycone

    concentration that reduces

    delayed bitterness

    In low level in citrus fruits

    so isolated from bacteria

    N terminal sequence

    determined

    Gene being from cDNA

    library prepared from

    bacterium

    diverts biosynthetic

    pathway of limonin

    Nonbitter deacetylnomilin

    accumlated instead of

    limonin

    Enzyme not isolated yet

    Isolated from albedo tissues by a

    combination of ammonium slfate

    fractionation, affinity

    chromatography,

    and ion-exchange high-

    performance liquid

    chromatography (HPLC)

    Isolated by ammonium

    slfate fractionation, Blue

    dye-ligand affinity

    chromatography,

    and ion-exchange HPLC

    Food review. Int 12 4 1996

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    EXTRACTION & QUALITATIVE &QUANTITATIVE ANALYSIS OF

    CITRUS BITTER PRINCIPLE.

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    Analytical Methods of Citrus

    Limonoids

    Thin-layer chromatography (TLC)

    -- for limonoid detection

    Nuclear Magnetic Resonance (NMR)

    -- determination of limonoid structure

    HPLC -- detection & quantification

    Radioimmunoassaydetection &

    quantification

    HPLC-MS detection & quantification

    EXTRACTION OF LARL & NARL FROM

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    EXTRACTION OF LARL & NARL FROM

    CITRUS JUICEJuice sample centrifuged at16000*g for 5min at 10 C.

    Supernatant collected and filtered through 0.45 um filter.

    Filtered liquid used to prepare three samples.

    Juice(150 l)+CA internal standard

    solution(75 l, 100 ppm)

    Samples mixed and loaded(1 ml) onto strata X solid phase extraction columns

    that was washed with MeOH(1 ml) and preconditioned with water(1 ml).

    Thereafter column washed first with water(0.5 ml) and then CHCL3 (0.5ml) .

    LARL finally eluted with solution B (CH3CN-MeOH-Water) (1 ml).

    Juice (150 l)+internal

    calibrator solution(15 l)

    Juice (150 l)+

    water (1.26 ml)

    JOURNAL OF CHROMATOGRAPHY A, 1064(2005) 187-191

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    EXTRACTION OF BITTER LIMONOIDS/ LIMONOID

    AGLYCONES FROM CITRUS JUICE

    Juice obtained by hand squeezing

    Juice gently liquid/liquid extracted with CHCl3 (2*2.5 ml) for 30 s

    3 l diluted extract was injected into LC-MS

    2 ml juice transferred to test tube & 40 l internal standard added (167 ng/l)

    CHCL3 extractscombined & 100 l of it removed.

    It was evaporated to dryness and redissolved in MeOH or THF(300 l)

    J. AGRIC. FOOD CHEMISTRY 2005, 51, 3709-3714

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    EXTRACTION OF LIMONOID GLUCOSIDES

    Wet samples (juice, molasses, wash

    water) centrifuged at 16000 * g for 5 min

    at 10 C.

    Supernatant collected and filtered through

    a 0.45 um filter.

    Sample for injection prepared bycombining 75 l sample, 925 l water and

    300 l MeOH and 200 l internal standard

    solution

    Samples analyzed by ESI-LC-MS

    Solid samples (peel, seeds, etc) oven-dried

    but pulp samples dried overnight at 60 C

    and ground to pass 2mm mesh screen.

    100 mg weighed into 10 * 50 mm cellulose

    extraction thimbles.

    Sample extracted overnight in soxhlet

    extracter with 25 ml MeOH.

    Diluted to 30 ml with MeOH

    300 l of above extract + 700 l water + 200

    l carminic acid solution(30 mg/l) added to

    autosampler vial

    Sample analyzed by ESI-LC-MS

    J. AGRIC. FOOD CHEMISTRY 2005, VOL.49, NO 3, 2001

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    GENE EXPRESSION AND

    TRANSCRIPTOME STUDIES

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    STUDY OF TRANSCRIPTOME CHANGES DURING

    FRUIT DEVELOPMENT AND RIPENING FROM

    DIFFERENT PARTS OF THE FRUIT.

    STRUCTURE OF CITRUS

    FRUIT

    Braz. J. Plant Physiol., 19(4):333-362, 2007

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    CITRUS FRUIT STRUCTURES TARGETED FOR ENZYMES

    INDUCING NATURAL DEBITTERING IN CITRUS

    SEED FLESH ALBEDO FLAVEDO

    RNA ISOLATION AND CHARACTERIZATION AT DIFFERENT

    STAGES OF FRUIT DEVELOPMENT

    ANALYZING THE MECHANISM OF LIMONOID GLUCOSIDE

    ACCUMULATION IN CITRUS

    DEVELOPMENT OF TRANSGENIC PLANT WITH LOW LEVEL OF

    BITTER LIMONOIDS TROUGH ENHANCEMENT OF NATURAL

    DEBITTERING PROCESS

    CITRUS FRUIT TRANSCRIPTOME SEQUENCING- HTS

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    CITRUS FRUIT TRANSCRIPTOME SEQUENCING HTS

    RNA ISOLATION AND cDNA LIBRARY PREPARATION

    BIOINFORMATICS USAGE OF SOFTWARES FOR ILLUMINA GENOMEANALYSER DATA ASSEMBLY(Velvet, Oases, CLC GENOMICS)

    TRANSCRIPTOME COMPARISON OF CITRUS FRUIT UNIGENE WITH

    OTHER PLANT SPECIES

    SEQUENCE ANALYSIS AND FUNCTIONAL ANNOTATION THROUGH GENE

    ONTOLOGY(GO) CLASSIFICATION

    TRANSCRIPT PER MILLION(TPM)-STATISTICAL CALCULATION BETWEENSAMPLES FOR DATA NORMALIZATION AND COMPARISON PURPOSE AND

    ITS EXPRESSION PROFILING

    DIFFERENTIAL EXPRESSION OF SELECTION OF GENES VALIDIATED BY

    APPLYING REAL TIME QUANTITATIVE RT-PCR(q RT-PCR)Yu et al. BMC Genomics 2012, 13:10

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    CITRUS FRUIT TRANSCRIPTOME SEQUENCING

    USING MICROARRAY ANALYSIS

    RNA ISOLATION AND cDNA LIBRARY PREPARATION

    EST PROCESSING AND FUNCTIONAL ANNOTATIONMICROARRAY HYBRIDIZATION,SCANNING AND DATA ANALYSES

    TRANSCRIPT PROFILING- first step in correlating gene expression with specific

    biological processes, microarray being the high throughput method for it.

    THE CONSTRUCTION OF A GENE- specific oligonucleotide chip based on

    EST/genomic sequence data will expand microarray applications

    METABOLOMICS AND PROTEOMICS DONE TO

    1. correlate between compounds and/or proteins and a given trait or process.

    2. to compare between cultivars displaying different traits, and to identify the compound(s)

    and/or protein(s) associated with them.

    3. to identify compounds of pharmaceutical, industrial and commercial values, such as

    antioxidants, and unique aroma and flavor molecules

    Plant Molecular Biology (2005) 57:375391

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    CLONING AND CREATION OFTRANSGENIC VARIETIES

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    DEVELOPMENT OF CITRUS VIRUS

    VECTOR

    sequencing plant genomes resulted in identification of large numbers of novel open reading

    frames (ORFs) using large-scale functional genomic.

    virus vectors for expression or silencing of plant genes.

    Inoculation of plants with virus vectors a direct way to assay the function of specific genes

    without the time consuming process of plant transformation and regeneration.

    useful in woody plants like citrus, with long juvenile periods (up to 6-8 years).

    complete sequence of a new virus, the citrus leaf blotch virus (CLBV) obtained.

    used as a vector for expression or silencing genes in citrus plants because:

    1.viruses like CTV being phloem limited, CLBV replicates in all citrus tissues.

    2.accumulates mainly in meristematic tissues,offering an interesting model system to study

    genes involved in growth and development of leaves and fruits;

    3.monopartite genome of 8747nt containing three ORFs & easy to manipulate

    4.mechanically transmissible to citrus & facilitate inoculation of engineered versions carrying the

    foreign genes

    CREATION OF TRANSGENIC CITRUS

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    CREATION OF TRANSGENIC CITRUS

    FREE FROM LIMONIN BITTERNESSGENETIC TRANSFORMATION OF CITRUS

    EFFICIENT TRANSFORMATION IN CITRUS REQUIRED FOR TWO

    MAIN REASONS:

    TO IDENTIFY GENE FUNCTION

    DEVELOPMENT OF NEW AND IMPROVED CITRUS VARIETIES

    DEVELOPMENT OF TECHNOLOGIES FOR EFFICIENTTRANSFORMATION IN CITRUS

    GENE REMOVAL

    REMOVING GENES THAT ARE NO

    LONGER USEFULUSEFUL WHEN THE PLANT IS

    SMALL AND JUVENILE, NOT

    REQUIRED IN THE MATURE TREE;

    THIS WOULD PROVIDE THE

    BENEFITS OF TRANSGENIC TRAITS

    BUT RESULT IN NONTRANSGENIC

    FRUIT.

    GENE STACK ING.

    MODIFYING MULTIPLE OR COMPLEX

    CHARACTERISTICS OF A TREE

    :INSERTION OF MULTIPLE GENES.

    AND WOULD TAKE A LONG TIME.

    GENE STACKING REQUIRES

    TRANSFORMATION WITH MULTIPLE

    GENES OR THE SEQUENTIAL

    TRANSFORMATION..

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    TECHNOLOGIES CONT

    TECHNOLOGIES FOR GENETIC TRANSFORMATION OF CITRUS

    NON-ANTIBIOTIC

    SELECTION SYSTEMS

    SELECT

    TRANSFORMED

    CELLS & TISSUES

    WITHOUT USING

    ANTIBIOTICS.

    NEGATIVE (E.G.,

    PHOSPHINOTHRICIN)AND POSITIVE (E.G.,

    MANNOSE)

    SELECTION

    COMPOUNDS BE

    DEVELOPED

    LINKAGE GROUP

    TRANSFORMATION.

    TRANSFORMATION BY

    LARGE DNA INSERTS

    CONTAINING MULTIPLE

    GENES IN LINKAGE

    GROUPS

    FACILITATING

    POSITIONAL CLONING &FUNCTIONAL ANALYSIS

    INTRODUCING MULTIPLE

    GENES FOR SECONDARY

    PRODUCT PATHWAYS

    INTO CITRUS

    .

    GENE TARGETING.

    TARGETING GENE

    INSERTION BY

    HOMOLOGOUS

    RECOMBINATION INTO

    THE CITRUS GENOME.

    ALLOW DISRUPTION OF

    GENE FUNCTION (KNOCK-

    OUTS).

    RESTORATION OF

    FUNCTION OF DEFECTIVE

    GENES (GENE THERAPY)

    REPLACEMENT OF A

    GENE WITH A NEW OR

    ALTERED VERSION.

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    TECHNOLOGIES CONT....

    VIRAL-MEDIATED

    TRANSFORMATION.

    REQUIRE ANONPATHOGENIC VIRULENT

    VIRAL VECTOR & A METHOD

    TO DISPERSE THE VIRUS,

    PRESUMABLY AN INSECT

    VECTOR.

    PHENOTYPE OF THE TREE

    MODIFIED BY SIMPLY

    DEPLOYING A DIFFERENT

    ENGINEERED FORM OF THE

    VIRUS.

    TECHNOLOGIES FOR GENETIC TRANSFORMATION OF CITRUS

    PROMOTER LIBRARY.

    REPERTOIRE OF

    PROMOTER & CIS-ACTINGELEMENTS CONTROLING

    GENE EXPRESSION.

    COORDINATION OF

    APPROPRIATE EXPRESSION

    LEVELS IN SPECIFIC

    TISSUES OR CELL TYPES,

    AT SPECIFIC

    DEVELOPMENTAL STAGES,

    AND UNDER VARIOUS

    ENVIRONMENTAL

    INDUCTION CONDITIONS.

    MATURE TISSUE

    TRANSFORMATION.

    BYPASS THE LONGJUVENILITY PERIOD.

    DIRECT TESTING

    OF PUTATIVE GENE

    CANDIDATES.

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    APPLICATIONS OF

    THE BITTER PRINCIPLES

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    BIOLOGICAL ACTIVITY OF CITRUS

    LIMONOIDS

    Anticarcinogenesis Activity

    (Inducers forGlutathione S-Transferase Activity)

    Antifeedant Activity TaxonomicMarkers

    Citrus limonoids posses furan

    moiety attached to the D-ring at

    the C-17 position that induces

    GST activity.

    Larvicidal effects.

    AdUlt repellent and

    oviposition deterrent

    effect of limonoids.

    Can be used as

    taxonomic markers

    as certainbiosynthetic

    pathways are

    unique to species

    and genus.

    Information as

    such can be usedto evaluate existing

    classification

    schemes or to

    modify those

    schemes

    Limonoids acts as

    insecticides against

    Colorado beetle, corn

    earworm, fallarmyworm, spruce

    budworm and

    tobacco bud worm

    Major limonoids with GST activity

    includes nomilin,Obacuone,

    Iso-obacunoic acid and ichangin

    J. Agric. Food chem 2007, 55, 8285-8294

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    Cont

    The results of the rabbit study,expanded the anecdotal

    evidence that secondary

    metabolites, including

    flavonoids and limonoids,

    could function endogenously

    to lower LDL cholesterol.

    HYPOCHOLESTEROLEMIC

    ACTIVITYANTIVIRAL ACTIVITY

    limonin and nomilin have

    also been evaluated for their

    capacity to act as antiretroviral

    agents.

    They inhibit viral replication,

    themechanism of action being

    the inhibition ofin Vitro HIV-1

    protease activity.

    J. Agric. Food chem 2007, 55, 8285-8294

    REFERENCES

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    REFERENCES1. Douglas J. McGarvey and Rodney Croteau, Terpenoid Metabolism , The Plant Cell, Vol. 7, 1015-1026,

    1995

    2. Shin Hasegawa & Masaki Miyake, Biochemistry and biological functions of citrus limonoids, Food Rev.

    Int,12(4),413-435,1996.

    3. Gary D. Manners, Citrus limonoids: analysis, bioactivity and biomedical prospects, J.agric. Food Chem,

    55, 8285-8294, 2007.

    4. Munish puri, S.S. marwaha, R. M. Kothari, J.F. Kennedy ,Biochemical basis of bitterness in citrus fruit

    juices and biotech approaches for debittering, Critical Reviews in Biotechnology, 16(2):145-155, 1996.

    5. Andrew P. Breska, Audrius A. Zukas, Gary D. Manners, Detemination of LARL and NARL in citrus juices

    by liquid chromatography-ESI MS, Journal of chromatography A, 1064, 187-191,2005.

    6. Thomas K. Schoch, Garry D. Manners, Shin HasegawaAnalysis of Limonoid Glucosides from Citrus byESI LC MS, J.agric. Food Chem, 49 (3), 1102-1108, 2001.

    7. Gary D. Manners, Andrew P. Breska , Thomas K. Schoch, Marlene B. Hidalgo, Analysis Of bitter

    Limonoids in Citrus Juices by APCI and EI -LC-MS, J.agric. Food Chem, 51,3709-3714, 2003.

    8. J. Forment etal, Development of a citrus genome-wide EST collection and cDNA microarray as

    resources for genomic studies, Plant Molecular Biology (2005) 57:375391,2005.

    9. Manuel Talon and Fred G. gmitter jr.,Citrus Genomics, International Journal of Plant Genomics, volume

    2008.

    10. Keqin Yu, Qiang Xu, Xinlei Da, Fei Guo, Yudon Ding, Xiuxin Deng, Transcriptome Changes during fruit

    development and ripening of sweet orange(Citrus sinesis) BMC Genomics, 2012

    11. M. Omura, M. Kita, . Endo-Inagaki, T. Moriguchi, R. Matsumoto, C. Suhayda, and Shin Hasegawa,

    Genetic Evaluation and Modification of the Accumulation of Limonoids in Citrus, ACS Symposium

    Series; American Chemical Society: Washington, DC, 2000.

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    44/44

    THANK YOU