Intron Evolution Supplemental

Kemin Zhou

Jan 14, 2011

64

80 ustma1

Picst3

Necha2

Trive1Trire2Aspni1

Mycgr1

Mycfi1

Phybl1

Batde5

Sporo1

cryneo1

copci1

Lacbi1

Pospl1

Phchr1

0.1

1.68

7.08

6.90

7.89

7.32

7.29

7.21

1.44

3.33

3.353.313.76

2.48

2.49

6.18

5.9

Ascomycota

Basidiomycota

PezizomycotinaSaccharomycotina

Eur

otio

myc

etes

Sordariomycetes

Dothideomycetes

Ustilaginomycotina

Pucciniomycotina

Agaricomycotina

Tremellom

ycetes

Agaricomycetes

Mucoromycotina

Chytridiomycota

Figure S1.

Length (Nucleotides)

Co

un

ts

0 2000 4000 6000

02

46

810

Aspni1

0 2000 4000 6000

020

40 Mycfi1

0 2000 4000 6000

05

1015

20 Mycgr1

0 2000 4000 6000

02

46

810

Necha2

0 2000 4000 6000

02

46

810

Picst3

0 2000 4000 60000

24

68

10

Trire2

0 2000 4000 6000

02

46

810

Trive1

0 2000 4000 6000

02

46

810

copci1

0 2000 4000 6000

02

46

810

cryneo1

0 2000 4000 6000

02

46

810

Lacbi1

0 2000 4000 6000

02

46

810

Phchr1

0 2000 4000 6000

010

2030

40

Pospl1

0 2000 4000 6000

02

46

810

Sporo1

0 2000 4000 6000

02

46

810

ustma1

0 2000 4000 6000

02

46

810

Batde5

0 2000 4000 6000

02

46

810

Phybl1

Figure S2.

log Number of RT

log

Gen

ome S

ize

p-value: 0.01845

2 3 4 5 6 7

16

.51

7.0

17

.51

8.0

Aspni1

Batde5

copci1

cryneo1

Lacbi1

Mycfi1

Mycgr1

Necha2

Phchr1

Phybl1

Picst3

Pospl1

Sporo1

Trire2

Trive1

ustma1

Figure S3.

9 10 11 12 13 14

4.1

4.2

4.3

4.4

4.5

4.6

ln (Total RTF Length (nt))

Me

an

ln (

intr

on

len

gth

(n

t))

Aspni1

Batde5

copci1

cryneo1

Lacbi1

Mycfi1

Mycgr1

Necha2

Phchr1

Phybl1

Picst3

Pospl1

Sporo1

Trire2

Trive1

ustma1

Figure S4.

3.6

3.8

4

4.2

4.4

4.6

4.8

5

Aspni1

Batde

5

copc

i1

cryn

eo1

Lacb

i1

Myc

fi1

Myc

gr1

Necha

2

Phchr

1

Phybl1

Picst3

Pospl1

Sporo

1Tr

ire2

Trive

1

ustm

a1

All

Between

Phylum

Species

Me

an

ln(I

ntr

on

Le

ng

th (

nt)

)

Figure S5

-20

-10

0

10

20

30

40

50

60

70

Asp

ni1

Bat

de5

copc

i1

cryn

eo1

Lacb

i1

Myc

fi1

Myc

gr1

Nec

ha2

Phc

hr1

Phy

bl1

Pic

st3

Pos

pl1

Spo

ro1

Trir

e2

Triv

e1

ustm

a1

Intr

on L

engt

h D

iffer

ence

(S

SG

-GC

AS

)

Figure S6.

Time

Intr

on

Le

ng

th

With ElementsOld

Novel

A

B

x y z