1
156-Plat Structural Coupling of the EF Hand and C-Terminal GTPase Domains in the Mitochondrial Protein Miro Julian Klosowiak 1 , Pamela Focia 1 , Srinivas Chakravarthy 2 , Eric Landahl 3 , Douglas Freymann 1 , Sarah Rice 1 . 1 Northwestern University, Chicago, IL, USA, 2 Argonne National Labs, Argonne, IL, USA, 3 DePaul University, Chicago, IL, USA. The outer mitochondrial membrane protein Miro is a highly conserved calcium-binding GTPase that is at the regulatory nexus of several processes, including mitochondrial transport and autophagy. Miro attaches mitochondria to the microtubule-based motor protein kinesin-1 and acts as a calcium- dependent switch for mitochondrial movement. Phosphorylation of Miro by Pink1 kinase and its subsequent Parkin-mediated degradation leads to mitoph- agy of damaged mitochondria. Relatively little is known about the molecular underpinnings of these processes and a structural understanding of the relevant protein machinery is lacking. Here we present crystal structures comprising the tandem EF hand and C-terminal GTPase (cGTPase) domains of Drosophila Miro. The structures reveal two previously unidentified ‘‘hidden’’ EF hands, each paired with a canonical EF hand. Each EF hand pair is bound to a helix that structurally mimics an EF hand ligand. A key nucleotide-sensing element and a Pink1 phosphorylation site both lie within an extensive EF hand/cGTPase interface and may have implications for Pink1-mediated recruitment of Parkin to the mitochondrial surface. Our results suggest structural mechanisms for cal- cium, nucleotide, and phosphorylation-dependent regulation of mitochondrial function by Miro. 157-Plat Interaction of the BAK Homodimer with the Membrane Sreevidya Aluvila, Tirtha Mandal, Kyoung Joon Oh. Biochemistry and Molecular Biology, Rosalind Franklin University of Medicine and Science, North Chicago, IL, USA. Programmed cell death, or apoptosis is an essential biological process in embryogenesis or in the maintenance of homeostasis in higher eukaryotes. In the mitochondrial apoptotic pathways, the pro-apoptotic Bcl-2 family proteins BAK and BAX, upon activation by death signals, are believed to form large oligomeric pores via homodimer formation in the mitochondrial outer mem- brane. Through these pores of an unknown structure, many apoptotic factors are released from the intermembrane space into the cytoplasm, where they initiate the cascade of events that lead to cell death. We have determined the topographic locations of the residues in the helices a4, a5 and a6 of BAK in the BAK oligomeric pore using the site-directed spin labeling method and/or the IASD (4-acetamido-4 0 -((iodoacetyl)amino)stilbene-2,2 0 disulfonic acid) la- beling approach. Accessibility parameters of oxygen and NiEDDA to residues in helix a5 showed that the helix is exposed to the membrane on one side, with the opposite side in tertiary contact. The IASD labeling pattern in helix a5 also revealed the same. These results were consistent with the predictions by the BAX ‘BH3-in-groove homodimer’, a recently reported X-ray crystallographic structure of a dimer of a truncated BAX consisting of helices a2-a5. The mem- brane immersion-depths of selected residues in helices a4 and a5 indicated that the adsorption of the BAK ‘BH3-in-groove homodimer’ to the membrane sur- face is mediated by the hydrophobic surface of the homodimer. The helix a6 was also adsorbed to the membrane surface, with its N-terminus deeper than the C-terminus. In summary, the data suggest that BAK proteins form a lipidic pore, unlike the channel forming domains of certain bacterial toxins such as diphtheria toxin or colicin molecules. The results provide further insights into the mechanism of formation of the mitochondrial apoptotic pores by BAX or BAK. 158-Plat Fission Promotes Respiration and ROS Production in Individual Mito- chondria Huiliang Zhang 1 , Shey-Shing Sheu 2 , Wang Wang 1 . 1 Department of Anesthesiology and Pain Medicine, Mitochondria and Metabolism Center, Seattle, WA, USA, 2 Department of Medicine, Jefferson Medical College, Thomas Jefferson University, Center for Translational Medicine, Philadelphia, PA, USA. The balance between fission and fusion essentially participates in mitochon- drial biogenesis, transportation and maturation. Whether endogenous fission and fusion processes regulate mitochondrial respiration and ROS production in the heart is not well studied. Cardiac myocytes are excitable cells that featured by dynamic intracellular calcium regulations. Increased intracellular calcium is known to activate dynamin-like protein 1 (DLP1), a key regulator of mitochondrial fission. In this study, we used adenovirus mediated gene transfer of a mitochondrial targeted superoxide indicator and confocal micro- scopy to investigate the role of fission in mitochondrial respiration and ROS production regulation. We monitored the mitochondrial superoxide flashes (SOFs), which are quantal events of superoxide generation coupled with single mitochondrial respiration, in cultured cardiomyocytes. Acute application of Mdivi-1 (50 mM), a DLP inhibitor suppressed resting SOF activity in rat adult cardiomyocytes and H9C2 cardiac myoblasts. Furthermore, metabolic sub- strates (20 mM Pyruvate or 20 mM Glucose)-induced SOF events were blocked by Mdivi-1, indicating an essential role of fission in maintaining normal mitochondrial function. Acute stimulation of fission by KCl (50 mM), which induced calcium transients, dramatically stimulated the SOF (SOF frequency from 0.9750.36 to 2.4650.34 per 1000 mm2 per 100 s) in H9C2 cells. The effect of KCl is blocked by Mdivi-1. Interestingly, long- term incubation of high glucose (35 mM for 48 hr), which has been shown to induce mitochondrial fragmentation, failed to stimulate SOF activity in H9C2 cells. These results reveal an essential role of mitochondrial fission in regulating physiological functions of individual mitochondria and also high- light that chronically disturbing fission/fusion dynamics may have detrimental effects. 159-Plat The Correlation Between UCP Expression UND Cellular Metabolism Anne Rupprecht 1,2 , Dana Sittner 2,3 , Alina Smorodchenko 1,2 , Karolina E. Hilse 1 , Rudolf Moldzio 4 , Andrea E.M. Seiler 3 , Anja U. Bra ¨uer 2 , Elena E. Pohl 1,2 . 1 Institute of Physiology, Pathophysiology and Biophysics, University of Veterinary Medicine, Vienna, Austria, 2 Institute of Cell Biology and Neurobiology, Charite ´ - Universita ¨tsmedizin, Berlin, Germany, 3 Department of Experimental Toxicology and ZEBET, German Federal Institute for Risk Assessment (BfR), Berlin, Germany, 4 Institute of Medical Biochemistry, University of Veterinary Medicine, Vienna, Austria. Mitochondrial anion carriers transport components of cellular metabolic path- ways across the inner mitochondrial membrane. In contrast, the members of the uncoupling protein subfamily (UCP1-UCP5) were shown to transport pro- tons, that is, in case of UCP1, a molecular basis of non-shivering thermogen- esis. The exact biological functions of the other UCPs still remain elusive. However, there is increasing evidence that the UCPs’ function may be linked to the cell metabolism. In our previous work 1,2,3, we have shown that the tissue distribution of particular UCPs are strikingly different. Here, we hy- pothesized that their expression is tightly connected to a certain type of cell metabolism. To prove this hypothesis, we employ mouse embryonic stem cells (mESC) which only express UCP2. After initiation of the neuronal differentiation, the UCP2 expression drops abruptly. In contrast, the expres- sion of UCP4 starts with the beginning of neuronal differentiation and lasts throughout neuronal development in embryonic mouse tissue as the expres- sion of other neuronal markers simultaneously takes place. Notably, UCP4 is not present in neuroblastoma cells, which instead prominently express UCP2. To elucidate the role of UCP2 and UCP4 we analyse the regulation of UCP2 expression in cultivated neuroblastoma cells and UCP4 in primary neuronal culture under different growing conditions. The results support our hypothesis that both proteins are a fixed part of the respective cell metabolism. 1. Smorodchenko, A et al. Biochim Biophys Acta. 2009 Oct;1788(10):2309-19. 2. Smorodchenko, A et al. Mol Cell Neurosci. 2011 Aug;47(4):244-53. 3. Rupprecht, A. et al. PLoS One. 2012;7(8):e41406. 28a Sunday, February 16, 2014

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Page 1: Interaction of the BAK Homodimer with the Membrane

28a Sunday, February 16, 2014

156-PlatStructural Coupling of the EF Hand and C-Terminal GTPase Domains inthe Mitochondrial Protein MiroJulian Klosowiak1, Pamela Focia1, Srinivas Chakravarthy2, Eric Landahl3,Douglas Freymann1, Sarah Rice1.1Northwestern University, Chicago, IL, USA, 2Argonne National Labs,Argonne, IL, USA, 3DePaul University, Chicago, IL, USA.The outer mitochondrial membrane protein Miro is a highly conservedcalcium-binding GTPase that is at the regulatory nexus of several processes,including mitochondrial transport and autophagy. Miro attaches mitochondriato the microtubule-based motor protein kinesin-1 and acts as a calcium-dependent switch for mitochondrial movement. Phosphorylation of Miro byPink1 kinase and its subsequent Parkin-mediated degradation leads to mitoph-agy of damaged mitochondria. Relatively little is known about the molecularunderpinnings of these processes and a structural understanding of the relevantprotein machinery is lacking. Here we present crystal structures comprising thetandem EF hand and C-terminal GTPase (cGTPase) domains of DrosophilaMiro. The structures reveal two previously unidentified ‘‘hidden’’ EF hands,each paired with a canonical EF hand. Each EF hand pair is bound to a helixthat structurally mimics an EF hand ligand. A key nucleotide-sensing elementand a Pink1 phosphorylation site both lie within an extensive EF hand/cGTPaseinterface and may have implications for Pink1-mediated recruitment of Parkinto the mitochondrial surface. Our results suggest structural mechanisms for cal-cium, nucleotide, and phosphorylation-dependent regulation of mitochondrialfunction by Miro.

157-PlatInteraction of the BAK Homodimer with the MembraneSreevidya Aluvila, Tirtha Mandal, Kyoung Joon Oh.Biochemistry and Molecular Biology, Rosalind Franklin University ofMedicine and Science, North Chicago, IL, USA.Programmed cell death, or apoptosis is an essential biological process inembryogenesis or in the maintenance of homeostasis in higher eukaryotes. Inthe mitochondrial apoptotic pathways, the pro-apoptotic Bcl-2 family proteinsBAK and BAX, upon activation by death signals, are believed to form largeoligomeric pores via homodimer formation in the mitochondrial outer mem-brane. Through these pores of an unknown structure, many apoptotic factorsare released from the intermembrane space into the cytoplasm, where theyinitiate the cascade of events that lead to cell death. We have determined thetopographic locations of the residues in the helices a4, a5 and a6 of BAK inthe BAK oligomeric pore using the site-directed spin labeling method and/orthe IASD (4-acetamido-40-((iodoacetyl)amino)stilbene-2,20disulfonic acid) la-beling approach. Accessibility parameters of oxygen and NiEDDA to residuesin helix a5 showed that the helix is exposed to the membrane on one side, withthe opposite side in tertiary contact. The IASD labeling pattern in helix a5 alsorevealed the same. These results were consistent with the predictions by theBAX ‘BH3-in-groove homodimer’, a recently reported X-ray crystallographicstructure of a dimer of a truncated BAX consisting of helices a2-a5. The mem-brane immersion-depths of selected residues in helices a4 and a5 indicated thatthe adsorption of the BAK ‘BH3-in-groove homodimer’ to the membrane sur-face is mediated by the hydrophobic surface of the homodimer. The helix a6was also adsorbed to the membrane surface, with its N-terminus deeper thanthe C-terminus. In summary, the data suggest that BAK proteins form a lipidicpore, unlike the channel forming domains of certain bacterial toxins such asdiphtheria toxin or colicin molecules. The results provide further insightsinto the mechanism of formation of the mitochondrial apoptotic pores byBAX or BAK.

158-PlatFission Promotes Respiration and ROS Production in Individual Mito-chondriaHuiliang Zhang1, Shey-Shing Sheu2, Wang Wang1.1Department of Anesthesiology and Pain Medicine, Mitochondria andMetabolism Center, Seattle, WA, USA, 2Department of Medicine, Jefferson

Medical College, Thomas Jefferson University, Center for TranslationalMedicine, Philadelphia, PA, USA.The balance between fission and fusion essentially participates in mitochon-drial biogenesis, transportation and maturation. Whether endogenous fissionand fusion processes regulate mitochondrial respiration and ROS productionin the heart is not well studied. Cardiac myocytes are excitable cells thatfeatured by dynamic intracellular calcium regulations. Increased intracellularcalcium is known to activate dynamin-like protein 1 (DLP1), a key regulatorof mitochondrial fission. In this study, we used adenovirus mediated genetransfer of a mitochondrial targeted superoxide indicator and confocal micro-scopy to investigate the role of fission in mitochondrial respiration and ROSproduction regulation. We monitored the mitochondrial superoxide flashes(SOFs), which are quantal events of superoxide generation coupled with singlemitochondrial respiration, in cultured cardiomyocytes. Acute application ofMdivi-1 (50 mM), a DLP inhibitor suppressed resting SOF activity in rat adultcardiomyocytes and H9C2 cardiac myoblasts. Furthermore, metabolic sub-strates (20 mM Pyruvate or 20 mM Glucose)-induced SOF events wereblocked by Mdivi-1, indicating an essential role of fission in maintainingnormal mitochondrial function. Acute stimulation of fission by KCl (50mM), which induced calcium transients, dramatically stimulated the SOF(SOF frequency from 0.9750.36 to 2.4650.34 per 1000 mm2 per 100 s) inH9C2 cells. The effect of KCl is blocked by Mdivi-1. Interestingly, long-term incubation of high glucose (35 mM for 48 hr), which has been shownto induce mitochondrial fragmentation, failed to stimulate SOF activity inH9C2 cells. These results reveal an essential role of mitochondrial fission inregulating physiological functions of individual mitochondria and also high-light that chronically disturbing fission/fusion dynamics may have detrimentaleffects.

159-PlatThe Correlation Between UCP Expression UND Cellular MetabolismAnne Rupprecht1,2, Dana Sittner2,3, Alina Smorodchenko1,2,Karolina E. Hilse1, Rudolf Moldzio4, Andrea E.M. Seiler3, Anja U. Brauer2,Elena E. Pohl1,2.1Institute of Physiology, Pathophysiology and Biophysics, University ofVeterinary Medicine, Vienna, Austria, 2Institute of Cell Biology andNeurobiology, Charite - Universitatsmedizin, Berlin, Germany, 3Departmentof Experimental Toxicology and ZEBET, German Federal Institute for RiskAssessment (BfR), Berlin, Germany, 4Institute of Medical Biochemistry,University of Veterinary Medicine, Vienna, Austria.Mitochondrial anion carriers transport components of cellular metabolic path-ways across the inner mitochondrial membrane. In contrast, the members ofthe uncoupling protein subfamily (UCP1-UCP5) were shown to transport pro-tons, that is, in case of UCP1, a molecular basis of non-shivering thermogen-esis. The exact biological functions of the other UCPs still remain elusive.However, there is increasing evidence that the UCPs’ function may be linkedto the cell metabolism. In our previous work 1,2,3, we have shown that thetissue distribution of particular UCPs are strikingly different. Here, we hy-pothesized that their expression is tightly connected to a certain type ofcell metabolism. To prove this hypothesis, we employ mouse embryonicstem cells (mESC) which only express UCP2. After initiation of the neuronaldifferentiation, the UCP2 expression drops abruptly. In contrast, the expres-sion of UCP4 starts with the beginning of neuronal differentiation and laststhroughout neuronal development in embryonic mouse tissue as the expres-sion of other neuronal markers simultaneously takes place. Notably, UCP4is not present in neuroblastoma cells, which instead prominently expressUCP2. To elucidate the role of UCP2 and UCP4 we analyse the regulationof UCP2 expression in cultivated neuroblastoma cells and UCP4 in primaryneuronal culture under different growing conditions. The results support ourhypothesis that both proteins are a fixed part of the respective cellmetabolism.1. Smorodchenko, A et al. Biochim Biophys Acta. 2009 Oct;1788(10):2309-19.2. Smorodchenko, A et al. Mol Cell Neurosci. 2011 Aug;47(4):244-53.3. Rupprecht, A. et al. PLoS One. 2012;7(8):e41406.