42
1 The Vps/VacJ (Mla) ABC Transporter is required for intercellular 1 spread of Shigella flexneri 2 3 4 Chandra D. Carpenter a 5 Benjamin J. Cooley c 6 Brittany D. Needham a 7 Carolyn R. Fisher a 8 M. Stephen Trent ab 9 Vernita Gordon bc 10 Shelley M. Payne ab* 11 12 a Department of Molecular Biosciences and b Institute for Cellular and Molecular 13 Biology and c Department of Physics 14 University of Texas at Austin 15 Austin, TX 78712 16 17 * Corresponding author. Mailing address: Department of Molecular Biosciences, 18 1 University Station G2500, Austin, TX 78712. Phone: (512) 471-5204. Fax: 19 (512) 471 7088. E-mail: [email protected] 20 21 22 Running title: vps (mla) is required for Shigella virulence 23 IAI Accepts, published online ahead of print on 25 November 2013 Infect. Immun. doi:10.1128/IAI.01057-13 Copyright © 2013, American Society for Microbiology. All Rights Reserved.

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  1

The Vps/VacJ (Mla) ABC Transporter is required for intercellular 1 

spread of Shigella flexneri 2 

Chandra D. Carpentera 5 

Benjamin J. Cooleyc 6 

Brittany D. Needhama 7 

Carolyn R. Fishera 8 

M. Stephen Trentab 9 

Vernita Gordonbc 10 

Shelley M. Payneab* 11 

12 

aDepartment of Molecular Biosciences and bInstitute for Cellular and Molecular 13 

Biology and cDepartment of Physics 14 

University of Texas at Austin 15 

Austin, TX 78712 16 

17 

* Corresponding author. Mailing address: Department of Molecular Biosciences, 18 

1 University Station G2500, Austin, TX 78712. Phone: (512) 471-5204. Fax: 19 

(512) 471 7088. E-mail: [email protected] 20 

21  22 Running title: vps (mla) is required for Shigella virulence 23 

IAI Accepts, published online ahead of print on 25 November 2013Infect. Immun. doi:10.1128/IAI.01057-13Copyright © 2013, American Society for Microbiology. All Rights Reserved.

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Abstract 24 

The Vps/VacJ ABC transporter system is proposed to function in maintaining the 25 

lipid asymmetry of the outer membrane. Mutations in vps or vacJ in Shigella 26 

flexneri resulted in increased sensitivity to lysis by the detergent sodium dodecyl 27 

sulfate (SDS), and the vpsC mutant showed minor differences in its phospholipid 28 

profile compared to the wild type. vpsC mutants were unable to form plaques in 29 

cultured epithelial cells, but this was not due to failure to invade, to replicate 30 

intracellularly or to polymerize actin via IcsA for movement within the epithelial 31 

cells. The addition of the outer membrane phospholipase gene, pldA, on a multi-32 

copy plasmid in a vpsC or vacJ mutant restored its resistance to SDS, 33 

suggesting a restoration of lipid asymmetry to the outer membrane. However, the 34 

pldA plasmid did not restore the mutant’s ability to form plaques in tissue culture 35 

cells. Increased PldA also failed to restore the mutant’s phospholipid profile to 36 

that of wild type. We propose a dual function of the Vps/VacJ ABC transporter 37 

system in S. flexneri in both maintenance of lipid asymmetry in the outer 38 

membrane and a role in the intercellular spread of the bacteria between adjacent 39 

epithelial cells. 40 

41 

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Introduction 42 

Shigella flexneri is the causative agent of bacillary dysentery in humans. 43 

The bacteria invade the colonic epithelium, replicate intracellularly, and spread 44 

cell-to-cell, provoking the acute inflammatory response that is characteristic of 45 

the disease (1). While much is known about the initial invasion of epithelial cells 46 

by Shigella, less is understood about the requirements for intracellular replication 47 

and intercellular spread. 48 

Many of the genes required for pathogenesis of S. flexneri are encoded on 49 

a large plasmid (2, 3). Plasmid-encoded virulence factors include the invasion 50 

plasmid antigen (Ipa) effector proteins required for S. flexneri to enter the host 51 

cell and escape from the vacuole (4–6). These effector proteins are secreted by 52 

a type III secretion system (TTSS) that is also encoded on the virulence plasmid. 53 

When the effectors contact the epithelial cell, they induce cytoskeletal changes 54 

leading to internalization of the bacteria (7, 8). Once engulfed by the epithelial 55 

cell, the bacteria lyse the vacuole and replicate inside the cytosol of the host cell 56 

(6). 57 

Within the host cell cytoplasm, S. flexneri uses another virulence plasmid-58 

encoded protein, IcsA, to polymerize actin at one pole of the cell resulting in the 59 

propulsion of the bacteria throughout the host cell (9, 10). This actin-based 60 

motility also promotes movement of the bacteria into adjacent epithelial cells. 61 

Intercellular movement results in S. flexneri cells being surrounded by a double 62 

membrane, one from the cell it is exiting and another from the membrane of the 63 

cell it is entering (11). The secreted effector proteins are required for the bacteria 64 

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to escape this double membrane-bounded vacuole, and, once free in the 65 

cytoplasm, the bacteria repeat the cycle of replication and intercellular spread 66 

(12, 13). 67 

An understanding of the mechanisms of invasion and spread of S. flexneri 68 

has been facilitated by the use of cultured cells. When the wild-type bacteria are 69 

added to a monolayer of cultured cells, they invade and replicate in the 70 

cytoplasm. The initial invasion steps can by assayed by staining and visualizing 71 

the bacteria within infected cells (14, 15). Replication in the cytoplasm and 72 

subsequent intercellular spread can be assessed by a plaque assay, in which the 73 

spread of the bacteria to adjacent cells over a period of several days results in 74 

the localized destruction of the monolayer and the formation of plaques in the 75 

monolayer (16). Mutants that are defective in the TTSS or secreted effectors, fail 76 

to invade the cells (5, 17–21), while those that are defective in genes required for 77 

intracellular growth or actin polymerization are invasive, but fail to form plaques 78 

(9, 22–24). 79 

In a screen for S. flexneri mutants that invaded mammalian cells but failed 80 

to form plaques, we identified vpsC, which encodes a cytoplasmic membrane 81 

protein (25). vpsC is in a putative operon with vpsA (predicted to encode an ABC 82 

transporter), vpsB (predicted to encode an integral membrane protein), yrbC, 83 

and yrbB (Fig. 1A) (25). Mutation of vpsC or vpsA resulted in loss of the ability to 84 

form plaques in cultured cells; however, the mutants invaded at wild-type levels, 85 

suggesting a defect in intracellular growth or cell-to-cell spread (25). Suzuki et 86 

al. (26) had observed a similar phenotype for an S. flexneri vacJ mutant. While 87 

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the S. flexneri vacJ gene is not part of the vps operon, it is predicted to be part of 88 

the Vps/VacJ ABC transporter system, since it is found in an operon with vps 89 

homologs in other bacteria (27). 90 

In addition to the defect in plaque formation, the S. flexneri vpsA and vpsC 91 

mutants were more sensitive to sodium dodecyl sulfate (SDS) than wild-type S. 92 

flexneri, suggesting an increase in outer membrane permeability of the mutants 93 

(25). Greater sensitivity of the vpsC mutant to SDS did not appear to be due to 94 

changes in the lipopolysaccharide (LPS) structure since the mutant had the same 95 

LPS distribution as wild-type bacteria (25). 96 

Malinverni et al. (28) analyzed the Escherichia coli homologs of the vps 97 

genes and found that, similar to S. flexneri, a mutation in any of the vps/vacJ 98 

ABC transporter genes resulted in increased sensitivity to SDS. By searching for 99 

spontaneous mutations that restored SDS resistance, they discovered that 100 

increased transcription of the outer membrane phospholipase gene pldA 101 

suppressed the SDS sensitivity of the mutants. 102 

PldA encodes phospholipase A (29, 30), which is thought to help maintain 103 

the asymmetry of the outer membrane of Gram-negative bacteria by hydrolyzing 104 

excess phospholipids in the outer leaflet (31). The outer membrane has LPS in 105 

the outer leaflet, while the phospholipids are in the inner leaflet (32). 106 

Phospholipid accumulation in the outer leaflet of the outer membrane decreases 107 

the integrity of the outer membrane (33). Malinverni et al. (28) characterized the 108 

effect of vps/vacJ mutations on the outer leaflet of the outer membrane, by using 109 

the enzymatic activity of PagP, an outer membrane protein that is only active 110 

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when phospholipids are in the outer leaflet of the outer membrane (34), as a 111 

reporter to assess the relative amounts of phospholipids in the outer leaflet (35, 112 

36). The data from Malinverni et al. indicated an increase in phospholipids in the 113 

outer leaflet of the outer membrane of the vps/vacJ mutants, which was reduced 114 

by the presence of pldA on a multi-copy plasmid (28). Based on these 115 

observations, Malinverni et al. proposed that the function of the vps/vacJ ABC 116 

transport system is to maintain lipid asymmetry in Gram-negative outer 117 

membranes and renamed the genes mlaA (vacJ), mlaB (yrbB), mlaC (yrbA), 118 

mlaD (vpsC), mlaE (vpsB), mlaF (vpsA) (Figure 1A) for their role in maintenance 119 

of outer membrane lipid asymmetry (28). 120 

In this report, we demonstrate that the failure of a S. flexneri vpsC mutant 121 

to form plaques in epithelial cell monolayers is due to an inability to spread 122 

between cells but not due to an inability to replicate inside the cell or an inability 123 

to polymerize actin at one pole for use in motility. To determine if membrane 124 

instability is responsible for the inability of the S. flexneri vpsC (mlaD) mutant to 125 

spread from cell to cell, we show that while introduction of a plasmid carrying 126 

pldA suppresses the SDS sensitivity of the S. flexneri vpsC mutant, it did not 127 

restore plaque formation in epithelial cell monolayers, nor did it restore the 128 

phospholipid profile of the vpsC mutant to wild type. We propose that the 129 

vps/vacJ system is required for intercellular spread of S. flexneri in addition to its 130 

role in maintaining lipid asymmetry in the outer membrane. 131 

132 

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Materials and Methods 133 

Bacterial strains and growth conditions. All strains and plasmids used 134 

in this study are listed in Table 1. S. flexneri was streaked onto Congo red agar 135 

(Tryptic soy broth, 1.5% agar, 0.01% (wt/vol) Congo red dye (Sigma Chemical 136 

Co., St. Louis, MO)), and Congo red binding colonies (Crb+) were selected (37). 137 

Bacteria were grown in Luria-Bertani broth (LB) or on LB-agar at 37°C. 138 

Antibiotics were used at following concentrations: 25 μg of ampicillin per ml and 139 

50 μg of kanamycin per ml. 140 

Construction of S. flexneri mutants. The S. flexneri pldA mutant was 141 

created by bacteriophage P1 transduction of the pldA::kan allele from E. coli 142 

strain JW3794 (Keio collection) (38) into S. flexneri strain SA100. The pldA 143 

mutation was verified via PCR. 144 

Recombinant DNA techniques. Primers used in this study are listed in 145 

Table 2. Plasmids for expression of pldA, vpsC, and vpsABC (pPldA, pVpsC, 146 

and pVpsABC, respectively) were constructed by amplifying the wild-type genes 147 

from S. flexneri strain, SA100, using the indicated primers and ligating the 148 

resulting PCR fragment into the SmaI site of pWKS30 (39). Primers pldAF and 149 

pldAR were used to amplify pldA. Primers vpsAF and vpsCDR were used to 150 

amplify vpsABC. pVacJ was constructed by amplifying the wild-type vacJ gene 151 

from S. flexneri strain SA100 using primers vacJF and vacJR and ligating the 152 

PCR fragment into pWKS30 digested with PstI and XhoI. Plasmid inserts were 153 

sequenced at the University of Texas at Austin DNA sequencing facility using an 154 

ABI 3130 sequencer (Applied Biosystems, Grand Island, New York). 155 

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SDS-EDTA sensitivity assays. SDS-EDTA sensitivity assays were 156 

performed as described in Malinverni et al. (28). Briefly, S. flexneri cultures were 157 

grown to mid-log phase (OD650 of 0.5-0.8). Two microliters of serial dilutions 158 

were spotted onto L agar containing 0.1 or 0.25% SDS and 0.55 mM EDTA. The 159 

plates were incubated overnight at 37°C. 160 

Cell culture media and growth conditions. Henle cells (intestinal 407; 161 

American Type Culture Collection, Manassas, VA) were cultured in minimal 162 

essential medium (MEM; Gibco, Grand Island, NY) supplemented with 10 % 163 

Bacto tryptone phosphate broth (Difco, Becton Dickinson and Company, Franklin 164 

Lakes, NJ), 10 % fetal bovine serum (Gibco, Grand Island, NY), 2 mM glutamine, 165 

and 1 X nonessential amino acids (Gibco, Grand Island, NY). Henle cells were 166 

incubated at 37°C with 5% CO2. 167 

Cell culture assays. Invasion assays were performed as described in 168 

Hale and Formal (15) with the following modifications: Crb+ colonies were 169 

inoculated into LB and grown overnight at 30°C with aeration, then diluted 1:50 or 170 

1:100 into LB and grown at 37°C with aeration to mid-log phase (OD650 0.5-0.9). 171 

Next, 2 x 108 bacteria were added to semi-confluent monolayers of Henle cells in 172 

35-mm, 6-well, polystyrene plates (Corning, Corning, NY) and centrifuged for 10 173 

min at 1000 x g. The plates were incubated at 37°C with 5% CO2 for 30 min then 174 

washed 4 times with 2 ml of phosphate buffered saline (PBS-D: 1.98 g KCl, 8 g 175 

NaCl, 0.02 g KH2PO4, K2HPO4), and 2 ml of MEM supplemented with 40 μg of 176 

gentamycin per ml was added. The monolayers were incubated an additional 40 177 

minutes, washed with PBS-D, and stained with Wright-Giemsa stain (Camco, Ft. 178 

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Lauderdale, FL). The infected Henle cells were visualized by bright-field 179 

microscopy at 1000X magnification. Invasion rates were calculated by counting 180 

at least 300 Henle cells per well and scoring those Henle cells with 3 or more 181 

internal bacteria as positive for invasion. 182 

Plaque assays were performed as described by Oaks et al. (16). Briefly, 183 

103 to 105 bacteria were added to confluent monolayer of Henle cells in 35-mm, 184 

6-well, polystyrene plates. The monolayers were incubated for 90 min at 37°C 185 

with 5% CO2, washed with PBS-D, then overlaid with MEM containing 0.45% 186 

(wt/vol) glucose and 20 μg gentamycin per ml. After incubation for 24 hours, the 187 

medium was replaced with MEM containing only 20μg of gentamycin per ml and 188 

the plates were incubated for another 48 hours before being washed with PBS-D 189 

and stained with Wright-Giemsa stain. 190 

Cell-to-cell spread assays were performed similar to invasion assays, 191 

except the inoculum was 2 x 107 bacteria and the monolayers were incubated for 192 

3 hours and 30 minutes after addition of MEM containing 20 μg of gentamycin 193 

per ml. Cell-to-cell spread rates were calculated by counting 100 infected Henle 194 

cells in close association with other Henle cells and scoring them as positive for 195 

spread if any of the surrounding Henle cells also contained 3 or more internal 196 

bacteria. 197 

Intracellular bacteria were recovered as described by Hong et al. (25). 198 

Briefly the cell monolayers were detached with trypsin (0.025% [wt/vol]) and 199 

lysed using 0.5% sodium deoxycholate (DOC). The lysate was plated on tryptic 200 

soy agar plates to determine bacterial CFU. Prior to lysis, the number of Henle 201 

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cells recovered was determined using a hemocytometer. The bacterial CFU per 202 

infected Henle cell was calculated as total bacterial CFU/ total number of Henle 203 

cells multiplied by the invasion rate. 204 

Intracellular replication assays were performed similar to invasion assays, 205 

except the monolayer was lysed at specific time intervals after the addition of 206 

MEM containing 20 μg of gentamycin per ml. The intracellular bacteria were 207 

recovered by detaching the Henle cell monolayers with trypsin (0.025% [wt/vol]), 208 

centrifuging the cells at 12,000 x g for 5 minutes, and lysing the Henle cells in 209 

distilled, deionized water. The lysate was plated on tryptic soy agar plates to 210 

determine bacterial CFU. 211 

Isolation and analysis of lipid species from 32Pi-labeled cells. Bacteria were 212 

grown in the presence of 2.5 µCi/ml 32Pi to an OD650 of ~1.0 in LB. Both lipid A 213 

and phospholipids were extracted by the method of Bligh and Dyer (40) and 214 

spotted onto a Silica Gel 60 thin-layer chromatography plate as previously 215 

described (41, 42). Phospholipids (50,000 counts/sample) were separated by 216 

TLC using of chloroform, methanol, and acetic acid (65:25:10, vol/vol) solvent 217 

system. Lipid A species (10,000 counts/sample) were separated using 218 

chloroform, pyridine, formic acid, water (50:50:16:5, vol/vol). The TLC plates 219 

were exposed overnight to a PhosphorImager screen, and lipids were detected 220 

using a Bio-Rad Molecular Imager PhosphorImager equipped with Quantity One 221 

software, which was used for densitometry quantification. 222 

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Polymerized Actin Staining. Henle cells grown on coverslips were 223 

infected with S. flexneri strains containing the gfp-expressing plasmid pMRP9-1 224 

(43) for 30 minutes at 37°C in 5% CO2. The monolayer was washed 4 times with 225 

PBS-D, and medium containing 40 μg of gentamycin per ml was then added to 226 

the monolayers. After incubating at 37°C in 5% CO2 for 1 hour, the monolayer 227 

was washed 3 times with PBS-D. The Henle cells were fixed with 4% 228 

paraformaldehyde for 5 minutes at room temperature and then permeabilized 229 

with 0.1% (vol/vol) Triton X-100 for 5 minutes at room temperature. After 230 

blocking in 1% bovine serum albumin (BSA) in PBS-D for 20 minutes, 50 μl of 0.2 231 

μg/ml phalloidin-TRITC (Sigma-Aldrich, St. Louis, MO) was added to the 232 

coverslip. After incubation for 20 minutes, the coverslip was washed and 233 

mounted on a clean glass slide treated with Vectashield (Vector Laboratories, 234 

Burlingame, CA). Fluorescence microscopy was performed with an Olympus 235 

FluoView FV1000 confocal laser scanning microscope (CLSM) (Tokyo, Japan). 236 

Images were obtained with a 60x, 1.42 N.A. oil-immersion objective. Images were 237 

processed using ImageJ software (44). Images represent a Z projection of 238 

average intensities. 239 

240 

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Results 241 

Increased pldA expression suppressed the SDS sensitivity of the vpsC and 242 

vacJ mutants 243 

Because the SDS sensitivity of the E. coli mlaD mutant was suppressed 244 

by increasing the amount of the outer membrane phospholipase PldA (28), we 245 

determined whether PldA would have the same effect in S. flexneri containing a 246 

mutation in the mlaD homolog vpsC. To determine the sensitivity to detergent of 247 

the mutants and wild type, bacterial cultures were diluted and spotted onto LB 248 

agar plate containing SDS and EDTA (Fig. 1B). To control for the number of 249 

bacteria added per spot, we spotted each dilution on LB agar plate that did not 250 

contain SDS or EDTA (Fig. 1C). The vpsC mutant was more sensitive to SDS-251 

EDTA than wild type (Fig. 1B, compare lane 2 to the wild type in lane 1), as we 252 

had shown previously (25), and this sensitivity to SDS-EDTA was complemented 253 

with the addition of vpsABC on a multi-copy plasmid (pVpsABC) (Fig. 1B, 254 

compare lane 3 to lane 1). The SDS sensitivity of the S. flexneri vacJ mutant 255 

(mlaA homolog) had not been determined previously. Therefore, the vacJ 256 

mutant was included in the assay, and, it was shown to be more sensitive to 257 

SDS-EDTA than wild type (Fig. 1B, compare lane 5 to the wild type in lane 1). 258 

The addition of vacJ on a multi-copy plasmid (pVacJ) restored the vacJ mutant’s 259 

sensitivity to SDS-EDTA to that of wild type (Fig. 1B, compare lane 6 to lane 1). 260 

The SDS-EDTA sensitivity of S. flexneri carrying a mutation in pldA was also 261 

determined. The pldA mutant was as sensitive to SDS-EDTA as wild type (Fig. 262 

1B, compare lane 8 to lane 1). 263 

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pPldA, carrying S. flexneri pldA with its putative promoter downstream of 264 

the lac promoter, was introduced into the vpsC mutant and the effect on 265 

detergent sensitivity was determined (Fig. 1B). The presence of pPldA restored 266 

SDS-EDTA resistance of the vpsC mutant to that of wild-type S. flexneri 267 

(compare lane 4 to lane 1). The SDS-sensitivity of the vacJ mutant, like the vpsC 268 

mutant, was suppressed by pPldA (compare lanes 5 and 7). The results of the 269 

SDS-sensitivity assay indicate that an increase in PldA in S. flexneri, as in E. coli, 270 

suppresses the increased sensitivity to SDS of vpsC and vacJ mutants. 271 

272 

Increased pldA did not restore plaque formation to vpsC or vacJ 273 

If the inability of the S. flexneri vpsC and vacJ mutants to form plaques in 274 

cell monolayers is due to increased outer membrane permeability within the 275 

cytoplasm of the host cell, then reducing permeability by increasing PldA should 276 

also suppress the plaque defect. To determine this, we performed plaque 277 

assays with the vpsC and vacJ mutants containing either the vector, pWKS30, or 278 

pPldA (Fig. 2). As expected, based on previous data (25, 26), neither the vpsC 279 

mutant nor the vacJ mutant formed plaques in cultured cell monolayers. The 280 

plaque-minus defect of the vpsC mutant was complemented by the addition of 281 

pVpsABC (Fig.2). The plaque-minus defect of the vacJ mutant was 282 

complemented by the addition of pVacJ (Fig.2). The plaque-minus defect of both 283 

the vpsC and the vacJ mutants was not suppressed by the presence of the 284 

plasmid carrying pldA (Fig. 2). It was possible that over-expression of pldA 285 

interfered with plaque formation. Therefore, the wild-type strain, SA100, was also 286 

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transformed with pPldA to determine adverse effects of the plasmid. 287 

SA100/pPldA formed wild-type plaques (Fig.2), indicating that the failure of pPldA 288 

to suppress the plaque-minus defect of the vpsC and vacJ mutants was not due 289 

to elevated PldA inhibiting plaque formation. These data showed that while the 290 

increase in PldA is sufficient to restore SDS sensitivity, it does not overcome the 291 

defect responsible for the inability of the mutants to form plaques. 292 

It is possible that pPldA might not be able to compensate for the 293 

deleterious effects of the vpsC mutant on membrane stability in the intracellular 294 

environment. We had previously observed that the vpsC mutant was recovered 295 

in much smaller numbers from detergent-lysed Henle cells than from wild type 296 

(25). However, an in vitro-grown vpsC mutant treated with the same amount of 297 

detergent (25) had a similar survival rate as wild type, suggesting that the 298 

intracellular environment might exacerbate the membrane permeability of the vps 299 

mutants. pPldA may not be able to suppress the detergent sensitivity of an 300 

intracellular vpsC mutant due to an increase in permeability of the bacteria in 301 

response to the intracellular environment. To determine if pPldA is capable of 302 

suppressing the detergent sensitivity of the intracellular vpsC mutant infected 303 

Henle cells were lysed in the presence of detergent. The lysate was plated onto 304 

agar medium and the number of bacteria recovered per infected Henle cell was 305 

calculated. As we had observed previously (25), there were significantly fewer 306 

vpsC mutant bacteria recovered from the infected cells when the monolayers 307 

were lysed with detergent as compared to wild type (Fig. 3). This difference in 308 

recovery in the presence of detergent was suppressed when the vpsC mutant 309 

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carried pPldA. This indicates that the presence of pPldA is sufficient to maintain 310 

the integrity of the outer membrane of the vpsC mutant in the intracellular 311 

environment. 312 

Although the presence of pPldA was not sufficient to overcome the 313 

virulence defect of the vpsC and vacJ mutants, PldA could have a role in 314 

maintaining lipid asymmetry and integrity of the outer membrane of intracellular 315 

S. flexneri. Therefore, the effect of a pldA mutation on plaque formation by S. 316 

flexneri was tested. The pldA mutant formed wild-type plaques in the monolayer 317 

(Fig. 2), indicating that the role of PldA in maintaining lipid asymmetry is not 318 

required for S. flexneri to spread cell-to-cell. 319 

Increased PldA reduces palmitoylated lipid A, but not lyso-320 

phosphatidylethanolamine to wild-type levels 321 

Because increased PldA did not restore the vpsC mutant’s ability to form 322 

plaques, it was likely that there were differences in the vpsC outer membrane 323 

that were not suppressed by increased PldA. To further characterize the 324 

membrane, we analyzed the phospholipids and lipid A of the wild type and 325 

mutant. As shown in Fig. 4A, the major phospholipid species in the vpsC mutant 326 

were similar to wild type. This is expected as the amount of phospholipids in the 327 

outer leaflet of the outer membrane would only be a small portion of the total 328 

phospholipids. Phospholipids in the outer leaflet are cleaved by PagP, which 329 

transfers a palmitate residue from the sn-1 position of the phospholipid onto lipid 330 

A, converting lipid A from hexa- to hepta-acylated. Therefore, the amount of 331 

palmitoylated lipid A provides an indirect measurement of phospholipids in the 332 

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outer leaflet of the outer membrane. As seen in Fig. 4B, the vpsC mutant has 333 

more hepta-acylated lipid A than the wild type. Complementation with pVpsABC 334 

reduced the levels to wild type, as does pPldA. This is consistent with increased 335 

PldA suppressing the detergent sensitivity of vpsC mutant by decreasing the 336 

amount of phospholipids in the outer leaflet of the outer membrane. However, as 337 

shown in Fig. 4A, pPldA does not fully restore the phospholipid profile of the 338 

vpsC mutant to wild type. There is an increase in lysophosphoethanolamine in 339 

the vpsC mutant compared to wild type. The level of lysophospholipid is reduced 340 

by the addition of pVpsABC, but not by pPldA. The increase in lysophospholipids 341 

may affect the stability of the bacteria when they are growing inside host cells or 342 

the interaction between the bacteria and components of the eukaryotic cell. 343 

344 

The vpsC mutant invades and replicates at wild-type levels 345 

To determine the point in the infection cycle at which the virulence defect 346 

in the vpsC/vacJ mutants was manifest, we compared the mutants, with or 347 

without pPldA, to the wild type for their ability to invade, replicate and spread 348 

within cultured cell monolayers. Neither the vpsC mutant, as we had shown 349 

previously (25), nor the vacJ mutant was defective for invasion, and introducing 350 

pPldA had no effect on invasion of the mutants or wild type (Table 3). Therefore, 351 

the inability of pPldA to restore plaque formation was not a result of an effect on 352 

entry into the cell, and the primary virulence defect of the vpsC/vacJ mutants is 353 

post-invasion. 354 

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To determine whether the defect in plaque formation resulted from 355 

reduced replication of the vpsC mutant in the cytoplasm, the cells were lysed at 356 

intervals after infection, and the lysate was plated to determine the number of 357 

intracellular bacteria. The Henle cells were lysed with water, rather than 358 

detergent, to avoid any deleterious effects on the vpsC mutant during recovery 359 

from the Henle cells. There was no significant difference in doubling time of the 360 

intracellular vpsC mutant (21 min) compared with intracellular wild-type bacteria 361 

(25 min). These data are consistent with earlier estimates of the vpsC growth 362 

rate determined by counting the increase in the number of intracellular bacteria 363 

over time using microscopy (25). 364 

365 

The vpsC mutant polymerizes actin 366 

The vpsC mutant is able to invade the epithelial cell, escape the initial 367 

vacuole, and replicate in the cytoplasm, suggesting that it is the final step 368 

required for plaque formation in cultured cells, the ability to spread from cell to 369 

cell, that is defective in the vpsC mutant. For propulsion of S. flexneri through 370 

the Henle cell, the formation of actin tails at one pole of the bacterium by the 371 

protein, IcsA, is required (9, 10). Previously, we showed that IcsA is localized to 372 

one pole of the vpsC mutant (25), a requirement for productive actin tail 373 

polymerization (9, 10). However, it was not determined whether IcsA was 374 

functional and led to formation of actin tails. To determine if the vpsC mutant 375 

polymerized actin, we infected Henle cells with a gfp-expressing vpsC mutant 376 

and stained the infected Henle cells with phalloidin, which binds polymeric actin, 377 

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conjugated to TRITC to visualize polymerized actin tails. As shown in Figure 4, 378 

the vpsC mutant polymerized actin as well as wild type. Both wild type and vpsC 379 

intracellular bacteria (green) have actin tails (red) extending from one pole of the 380 

bacterium. In contrast, the icsA mutant bacteria, which lack the ability to 381 

polymerize actin (10), do not have actin tails, as expected. This suggests that 382 

the inability of intracellular vpsC mutant bacteria to spread to neighboring 383 

epithelial cells is not due to an inability to form polymerized actin tails. 384 

385 

Cell-to-cell spread of vpsC and vacJ mutants is impaired 386 

Because the intracellular vpsC mutant replicated intracellularly and formed 387 

actin tails for movement, it appeared likely that the vpsC mutation was affecting 388 

the bacteria’s ability to penetrate neighboring cells and continue the intracellular 389 

infection cycle. To test this, nearly confluent monolayers of Henle cells were 390 

infected with the wild type, vpsC mutant, or vacJ mutant. A relatively low 391 

multiplicity of infection was used so that a minority of the Henle cells would be 392 

infected. After 4 hours, at which time the bacteria should have begun to move 393 

into adjacent cells, the monolayer was stained and viewed through a microscope. 394 

To quantitate the cell-to-cell spread of the bacteria, 100 infected Henle cells were 395 

observed, and, if any of the neighboring Henle cells were infected, then it was 396 

scored as positive for spreading. If none of the neighboring Henle cells were 397 

infected, then it was scored as negative for spreading (Fig. 5A). At the 4-hour 398 

time point in the wild-type infection, almost 90% of the infected Henle cells were 399 

surrounded by Henle cells that were also infected (Fig. 5B). In contrast, the icsA 400 

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mutant, which lacks the ability to spread to adjacent cells (10) showed far fewer 401 

instances of adjacent cells being infected (~20%), consistent with occasional 402 

independent infection of neighboring cells but limited or no cell-to-cell spread 403 

(Fig. 5B). In the monolayer infected with the vpsC or vacJ mutants, the 404 

percentage of infected Henle cells in contact with another infected cell was 405 

significantly lower than in the wild-type infection, although the defect was not as 406 

great as observed with the icsA mutant (Fig. 5B). This shows directly that the 407 

vpsC and vacJ mutants are impaired in their ability to infect neighboring cells in 408 

the Henle cell monolayer, likely accounting for the plaque negative phenotype of 409 

these mutants. Both the vpsC mutant and the vacJ mutant were complemented 410 

for intercellular spread by the addition of pVpsC and pVacJ, respectively (Fig. 411 

5B). pPldA was unable to suppress the defect in intercellular spread of either the 412 

vpsC or the vacJ mutant, consistent with its failure to suppress the plaque defect. 413 

414 

415 

416 

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Discussion 417 

The ability of S. flexneri to cause disease requires a complex series of 418 

events in which the bacteria invade, replicate inside host cells, and eventually 419 

spread to adjacent cells, causing significant cell damage and provoking 420 

inflammation (1). In a screen for mutants that were unable to spread cell-to-cell 421 

and produce plaques in monolayers of cultured cells, we identified mutations in 422 

the vps (mla) operon (25). The recent identification of a function for the E. coli 423 

Mla proteins prompted us to re-examine the role of these genes in Shigella 424 

pathogenesis. 425 

In E. coli, the Mla proteins are one of three known mechanisms 426 

responsible for removing excess phospholipids from the outer leaflet of the outer 427 

membrane (28, 31, 45). In the absence of the Mla system, the membrane 428 

becomes less stable and more permeable to SDS and other detergents. 429 

Increased expression of PldA, which removes outer leaflet phospholipids, 430 

compensated for E. coli mla mutations and restored SDS resistance (28), and a 431 

similar effect of PldA on detergent sensitivity was observed for S. flexneri vpsC or 432 

vacJ mutants. Increased PldA suppressed the increase in palmitoylated lipid A in 433 

the S. flexneri vpsC mutant, suggesting that PldA is removing the phospholipids 434 

in the outer leaflet of the outer membrane of the vpsC mutant, resulting in 435 

suppression of the detergent sensitivity of the mutant. 436 

The product of PldA-mediated hydrolysis of phospholipid is 437 

lysophospholipid, and increased PldA in the vpsC mutant carrying the plasmid 438 

pPldA results in more lysophosphoethanolamine (lysoPE) compared to both the 439 

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wild type and the vpsC mutant. There is also an increase in lysoPE in the vpsC 440 

mutant compared to wild type, which may be due to increased activity of PldA. 441 

PldA activity has been shown to increase in bacteria whose outer membranes 442 

are destabilized (46, 47). The increase in lysoPE in the vpsC mutant is not 443 

responsible for the mutant’s increased SDS sensitivity, as the vpsC mutant 444 

containing pPldA has more lysoPE than the vpsC mutant but is resistant to 445 

detergent. While the increase of lysoPE is not responsible for the detergent 446 

sensitivity of the mutant, these subtle differences in the membrane composition 447 

of the vpsC mutant alone or carrying pPldA compared to wild type may be 448 

sufficient to prevent the bacteria from forming plaques in the monolayer. 449 

The effect of the vpsC mutation on plaque formation by S. flexneri is at a 450 

late step in the intracellular growth cycle. Invasion, intracellular replication, and 451 

formation of actin tails by the mutants were indistinguishable from wild type. The 452 

notable difference was the reduced ability of the vpsC and vacJ mutants to 453 

penetrate and infect adjacent cells. This suggests that the vpsC mutant is 454 

impaired in its ability to push into the adjacent cell and lyse the resulting double 455 

membrane to escape into the neighboring cell cytoplasm. It was reported 456 

previously that the vacJ mutant is less able than wild-type S. flexneri to escape 457 

the double membrane formed when the bacterium moves from one cell to 458 

another; about 50% of the intracellular vacJ mutants were unable to escape the 459 

double membrane (26). Since it has been suggested that vacJ and vpsC are 460 

linked functionally (27), it is possible that the defect in cell-to-cell spread of the 461 

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vpsC mutant also can be attributed to an inability to escape the double-462 

membrane vacuole. 463 

It is not known at this time why a mutation in an mla gene would prevent 464 

S. flexneri from escaping the double-membrane vacuole; however, given that the 465 

type III secretion system is required for escape from that vacuole (13, 20), it is 466 

possible that the differences in the membrane of a vpsC mutant compared to wild 467 

type may affect proper assembly of the TTSS in the membrane or the timing of 468 

secretion of the effector proteins. Because the vpsC and vacJ mutants invade at 469 

wild-type levels, this indicates that the TTSS is functional when the bacteria are 470 

initiating invasion of the Henle cells. Thus, the assembly defect would only occur 471 

in the intracellular bacteria. It is also possible that once inside the double-472 

membrane vacuole, a signal is relayed to the bacterium via the proposed ABC 473 

transporter activity of the vps/vacJ system that triggers lysis of the vacuole and 474 

entry into the next cell. There is evidence that the outer membrane of the 475 

intracellular bacteria is in close contact with the membrane of the epithelial cell 476 

while inside the double membrane vacuole (20, 48) and this interaction could be 477 

sensed via the Vps/VacJ system. Further, Fukumatsu et al. (49) have shown 478 

that Shigella targets tricellin-containing epithelial cell junctions for cell-to-cell 479 

spread. The presence of VacJ in the outer membrane could play a role in 480 

helping the bacteria target the appropriate sites for spread. Thus, the Vps/VacJ 481 

ABC transporter may have a dual function in maintaining outer membrane 482 

asymmetry and in transporting a signal inside the bacterium when it comes into 483 

contact with the inner face of the epithelial cell membrane during intracellular 484 

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spread. Further study on the composition of the outer membrane of intracellular 485 

S. flexneri compared to extracellular S. flexneri is needed to better understand 486 

the role of the outer membrane and the proteins that maintain its integrity in the 487 

virulence of this pathogen. 488 

489 

490 

491 

Acknowledgments 492 

We thank Marvin Whiteley for generously providing plasmid pMRP9-1 and 493 

Alexandra Mey and Elizabeth Wyckoff for discussions and critical reading of the 494 

manuscript. This work was funded by grants AI16935 (to S.M.P.) and AI064184 495 

(to M.S.T.) from the National Institutes of Health, and the Army Research Office 496 

(grant W911NF-12-1-0390 to M.S.T.). 497 

498  499  500  501  502 

503  504 

505 

506 

507 

508 

509 

510 

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43. Davies DG, Parsek MR, Pearson JP, Iglewski BH, Costerton JW, 642 

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1778:1881–1896. 649 

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Escherichia coli cells. Biochim. Biophys. Acta 348:334–343. 651 

47. Michel GP, Stárka J. 1979. Phospholipase A activity with integrated 652 

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FEBS Lett. 108:261–265. 654 

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expression is required for the spread of Shigella flexneri between epithelial 656 

cells. Cell 76:829–839. 657 

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Kim M, Mimuro H, Sasakawa C. 2012. Shigella targets epithelial tricellular 659 

junctions and uses a noncanonical clathrin-dependent endocytic pathway to 660 

spread between cells. Cell Host Microbe 11:325–336. 661 

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51. Purdy GE, Hong M, Payne SM. 2002. Shigella flexneri DegP facilitates IcsA 665 

surface expression and is required for efficient intercellular spread. Infect 666 

Immun 70:6355–6364. 667 

668 

669 

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Table 1 Strains and plasmids 670  671 Strain or plasmid Description Reference 672 

S. flexneri 2a strains 673 

SA100 Wildtype (50) 674 

SA5122 SA100 vpsC::TnphoA (25) 675 

CDC200 SA100 vacJ::kan This study 676 

CDC201 SA100 pldA::kan This study 677 

SA511 Chloramphenicol-resistant SA100 derivative (22) 678 

SA222-7 SA511 icsA::TnphoA (51) 679 

Plasmids 680 

pWKS30 Low-copy cloning vector (39) 681 

pVpsABC vpsABC in pWKS30 This study 682 

pPldA pldA in pWKS30 This study 683 

pVacJ vacJ in pWKS30 This study 684 

pMRP9-1 gfp expressing plasmid (43) 685 

686  687 Table 2. Primers used in this study 688  689 Primer Sequence 690 vpsCR TGCAATCACCAGCAAAGCGACC 691 

vpsAF ACGTCCTTTCTTCAGGTATACTCG 692 

pldAF TTTTTAAAGGCCAGCTGTGCGAAC 693 

pldAR TTTTTAAAGCGGTGAAACAACCACGG 694 

vacJF ATCTTTCTCGAGCACCTAAACAGGCGGATACGGTATCG 695 

vacJR TACCATCTGCAGTGTCGGTTTATCTCCTTTTACTTGTGG 696 

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  33

697  698 Table 3: Invasion assays of S. flexneri mutants 699  700 Strain Relevant

characteristics

% Invasiona

SA100/pWKS30 Wild type 30.0 ± 6.0

SA100/pPldA Wild type, pPldA 28.0 ± 9.1

SA5122/pWKS30 vpsC- 26.7 ± 7.8

SA5122/pPldA vpsC-, pPldA 27.9 ± 2.2

CDC200/pWKS30 vacJ- 35.7 ± 4.3

CDC200/pPldA vacJ-, pPldA 33.4 ± 4.0

CDC201 pldA- 29.5 ± 7.4

701 

a Percentage of Henle cells infected with 3 or more bacteria. At least 300 Henle 702 

cells were observed per experiment, and means ± standard deviations of three 703 

experiments are shown. 704 

705 

706 

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Figure legends 707 

708 

Figure 1: Map of S. flexneri vps/vacJ genes and SDS-EDTA Sensitivity Assay. 709 

(A) This map is in accordance with S. flexneri serotype 2a sequences (GenBank 710 

accession no. AE014073.1A) S. flexneri gene names are listed above the arrows 711 

and E. coli gene names are listed beneath the arrows. (B) and (C) SDS-EDTA 712 

Sensitivity Assay. Cultures were grown until mid-log phase, and 2 μl of each 713 

dilution, indicated on the left, was spotted onto the agar plates. (B) LB agar 714 

medium supplemented with 0.1% SDS and 0.55 mM EDTA, and (C) LB agar 715 

medium.  716 

717 

Figure 2: Plaque formation of S. flexneri vpsC and vacJ mutants carrying pPldA. 718 

Confluent Henle cell monolayers were infected with approximately 104 bacteria, 719 

and the plaques were stained and photographed after 3 days. 720 

721 

Figure 3: Recovery of bacteria from infected Henle cells. Bacteria were grown to 722 

mid-log phase and then added to Henle cell monolayers. After infection, bacteria 723 

were harvested from the tissue culture monolayer by lysing Henle cells with DOC 724 

and plating onto agar medium. The bacteria harvested per infected Henle cell 725 

was calculated. Data presented are the mean values and standard deviations of 726 

4 biological replicates. *, p value < 0.01 compared to wild type (by Student’s t 727 

test). 728 

729 

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  35

Figure 4: TLC analysis of radiolabeled phospholipids and lipid A. Bacteria were 730 

grown in LB in the presence of 2.5 µCi/ml 32Pi to an OD650 of ~1.0. Phospholipids 731 

and lipid A were extracted then spotted and separated by TLC. (A) TLC of 732 

phospholipids. Arrows indicate the origin, lyso-phosphatidylethanolamine 733 

(lysoPE), phosphatidylethanolamine (PE), phosphatidylglycerol (PG), and 734 

cardiolipin (CL). The percentage of lysoPE in the sample is indicated at the 735 

bottom of each lane. (B) TLC of lipid A. Arrows indicate the origin, bis-736 

phosporylated hexa-acylated lipid A (hexa-acyl), and the palmitoylated lipid A 737 

(hepta-acyl). The percentage of palmitoylated lipid A within the sample is 738 

indicated at the bottom of each lane. 739 

740 

Figure 5: Staining of polymerized actin. Henle cells were infected with gfp-741 

expressing S. flexneri (green) for 30 minutes at 37°C. The monolayer was 742 

washed and media containing gentamycin was added. After one hour 743 

incubation at 37°C, the infected Henle cells were stained with phalloidin-TRITC 744 

(red) which binds to polymerized actin. Samples were visualized using confocal 745 

microscopy. White arrows point towards actin tails on bacterial cells. 746 

747 

Figure 6. Intercellular spread of wild type and vpsC mutant. Bacteria were 748 

added to a semi-confluent layer of Henle cells, and, after 30 minutes incubation 749 

at 37°C, the monolayer was washed and media containing gentamycin was 750 

added. After 4 hours, the monolayers were stained with Giemsa and viewed 751 

using bright field microscopy. (A) Images of intracellular spread for WT and vpsC 752 

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  36

mutant. Arrows indicate infected Henle cells. (B) Graph of intercellular spread. 753 

100 infected Henle cells were counted and were scored as positive for spread if 754 

surrounding Henle cells were also infected. Data presented are the mean values 755 

and standard deviations of 3 biological replicates. *, p value < 0.01 compared to 756 

wild type (by Student’s t test). 757 

758 

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WT

vpsC

vpsC/pVpsABC

vpsC/pPldA

vacJ/pPldA

vacJ/pVacJ

vacJ

pldA

pldA/pPldA

B.

C.

10-1

10-2

10-1

10-2

10-3

10-4

10-4

10-3

10-5

10-5

A. vpsCvpsA vpsByrbG yrbC yrbB yrbA

yfdC vacJhypotheticalprotein

mlaB mlaC mlaD mlaE mlaF

mlaA

10-6

1 2 3 4 5 6 7 8 9

1 2 3 4 5 6 7 8 9

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Wild type pldA

vpsC/pPldAvpsC/pVpsABC

vacJ/pPldAvacJ/pVacJ

vpsC

vacJ

Wild type/pPldA

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35

30

25

20

15

10

5

0

Ba

cte

ria

/in

fecte

d H

en

le c

ell

WT vpsC vpsC/pPldA

A.

*

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CL

PG

PE

lysoPE

originorigin

WT

vpsC

vpsC/p

Vps

ABC

vpsC/p

Pld

A

WT

vpsC

vpsC/p

Vps

ABC

vpsC/p

Pld

A

% lysoPE 4.4 9.5 3.1 2.3

A B

0.8 3.4 1.0 4.3

hexa-acyl

hepta-acyl

% hepta

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20

10

0

30

40

50

60

70

80

90

100

Pe

rce

nta

ge

of a

dja

ce

nt ce

lls in

fecte

d

WT icsA vpsC vpsCpVpsABC

vpsCpPldA

vacJ vacJ vacJpPldApVacJ

A. vpsC WT

B.

*

*

*

*

*

10 µm