Guanylate Cyclase and the cNO-cGMP Signaling Pathway

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    Review

    Guanylate cyclase and the cNO/cGMP signaling pathway

    John W. Denninger a, Michael A. Marletta aYbYcY*

    a 5315A Medical Sciences I, Department of Biological Chemistry, University of Michigan Medical School,

    1150 West Medical Center Drive Ann Arbor, MI 48109-0606, USAb Howard Hughes Medical Institute, University of Michigan, Ann Arbor, MI 48109-0606, USA

    c Interdepartmental Program in Medicinal Chemistry, College of Pharmacy, University of Michigan, Ann Arbor, MI 48109-1065, USA

    Received 13 August 1998; received in revised form 30 November 1998; accepted 16 December 1998

    Abstract

    Signal transduction with the diatomic radical nitric oxide (NO) is involved in a number of important physiological

    processes, including smooth muscle relaxation and neurotransmission. Soluble guanylate cyclase (sGC), a heterodimeric

    enzyme that converts guanosine triphosphate to cyclic guanosine monophosphate, is a critical component of this signaling

    pathway. sGC is a hemoprotein; it is through the specific interaction of NO with the sGC heme that sGC is activated. Over

    the last decade, much has been learned about the unique heme environment of sGC and its interaction with ligands like NO

    and carbon monoxide. This review will focus on the role of sGC in signaling, its relationship to the other nucleotide cyclases,

    and on what is known about sGC genetics, heme environment and catalysis. The latest understanding in regard to sGC will

    be incorporated to build a model of sGC structure, activation, catalytic mechanism and deactivation. 1999 Elsevier

    Science B.V. All rights reserved.

    Keywords: Guanylate cyclase; Cyclic guanosine monophosphate; Nitric oxide; Carbon monoxide; Heme

    Contents

    1. Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 335

    2. Historical perspective . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 335

    3. Signaling with the cNO/cGMP pathway . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 336

    4. The nucleotide cyclase family: sGC, pGC and AC . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 337

    0005-2728 / 99 / $ ^ see front matter 1999 Elsevier Science B.V. All rights reserved.

    PII: S 0 0 0 5 - 2 7 2 8 ( 9 9 ) 0 0 0 2 4 - 9

    Abbreviations: AC, adenylate cyclase; ATP, adenosine 5P-triphosphate; L11385, NH2-terminal heme binding domain of the L1 subunit

    of soluble guanylate cyclase; cAMP, cyclic adenosine 3P,5P-monophosphate; cGMP, cyclic guanosine 3P,5P-monophosphate; CO, carbon

    monoxide; CO-sGC, soluble guanylate cyclase with nitric oxide bound in the distal heme coordination site; EDRF, endothelium derived

    relaxing factor; EPR, electron paramagnetic resonance spectroscopy; FTIR, Fourier transform infrared spectroscopy; GTP, guanosine

    5P-triphosphate; cNO, nitric oxide; NO32 , nitrite; NO3

    3 , nitrate; NOS, nitric oxide synthase; NO-sGC, soluble guanylate cyclase with

    nitric oxide bound in the distal heme coordination site; PDE, phosphodiesterase; pGC, particulate guanylate cyclase; sGC, soluble

    guanylate cyclase; RR, resonance Raman spectroscopy

    * Corresponding author, at address a. Fax: +1 (734) 6475687; E-mail: [email protected]

    Biochimica et Biophysica Acta 1411 (1999) 334^350

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    5. Soluble guanylate cyclase genetics and isoforms . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 339

    6. Purication from mammalian tissue and expression systems . . . . . . . . . . . . . . . . . . . . . . . 341

    7. Heme environment . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 342

    8. Catalysis . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 343

    9. Model of sGC structure and function . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 344

    10. Conclusion . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 346

    Acknowledgements . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 346

    References . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 346

    1. Introduction

    Soluble guanylate1 cyclase (sGC) is the only con-

    clusively proven receptor for nitric oxide (cNO), a

    signaling agent produced by the enzyme nitric oxide

    synthase (NOS) from the amino acid L-arginine. As

    shown in Fig. 1, sGC catalyzes the conversion of

    guanosine 5P-triphosphate (GTP) to cyclic guanosine

    3P,5P-monophosphate (cGMP). Because it is one of

    two enzymes (the other is the membrane-bound pep-

    tide-receptor guanylate cyclase) that produce cGMP,

    and because it is the only denitive receptor for cNO,

    sGC is intimately involved in many signal transduc-tion pathways, most notably in the cardiovascular

    system (e.g., in the regulation of vascular tone and

    platelet function) and in the nervous system (e.g. in

    neurotransmission and, possibly, long-term potentia-

    tion and depression). Soluble guanylate cyclase is a

    heterodimeric protein composed of K and L subunits;

    in addition, it is a hemoprotein (see Fig. 2). cNO

    binds to the sGC heme; this binding event activates

    the enzyme. The activation of sGC and the subse-

    quent rise in cGMP concentration are what allow

    sGC to transmit an cNO signal to the downstream

    elements of the signaling cascade-cGMP-dependent

    protein kinase, cGMP-gated cation channels and

    cGMP-regulated phosphodiesterase. As will be de-

    scribed below, nearly 30 years of study of sGC

    have given us an outline of sGC structure and func-

    tion; however, many facets of sGC structure and

    function, especially at the molecular level, remain

    to be discovered.

    2. Historical perspective

    Although both sGC and its product, cGMP, were

    identied in the 1960s, it has been only within thelast 10 years that the complete outline of the cNO/

    cGMP signaling pathway has been understood. After

    the discovery of cAMP in 1958 [1] and the initial

    elucidation of its role in physiology (for early reviews

    see [2,3]), the search for other physiologically rele-

    vant cyclic nucleotides began. In 1963, cGMP was

    detected in the urine of rats [4]; several years later,

    guanylate cyclase was found in mammalian tissues

    [5^9]. In 1977, cNO 9 both as cNO gas and as cNO

    released from vasodilators like nitroglycerin and

    nitroprusside 9 was shown to activate guanylate

    cyclase [10^13]. At that point, though, cNO was

    unknown in biological systems, except when exoge-

    nously supplied by drugs like nitroglycerin, so it was

    assumed that cNO activation of sGC was a non-

    physiological, if useful, phenomenon.

    The story soon became clear, however. In 1980,

    Furchgott et al. were able to demonstrate the exis-

    tence of a substance produced by the endothelium

    that was required to mediate relaxation of blood

    1 Although we prefer `guanylate' cyclase (as does the Index

    Medicus and the Oxford Dictionary of Biochemistry and Molec-

    ular Biology), `guanylyl' cyclase is also used. Neither of the com-

    mon names for this enzyme is technically correct: `guanylate'

    refers to the anion of guanylic acid (guanosine monophosphate)

    and `guanylyl' refers to the acyl group derived from guanylic

    acid.

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    vessels [14]. They designated this substance endothe-

    lium-derived relaxing factor (EDRF). In 1986, Ignar-

    ro and Furchgott independently suggested that

    EDRF was cNO (reviewed in [15]); the next year, it

    was demonstrated that this was the case [16,17]. Atthe same time, our laboratory and others were un-

    raveling the story of nitrite (NO32 ) and nitrate (NO3

    3 )

    production in mammals. After initial observations by

    Tannenbaum and coworkers that mammals produce

    NO33 and that NO3

    3 synthesis is increased following

    immune stimulation [18^20], it was shown that NO32and NO33 were produced by immunostimulated mac-

    rophages from the amino acid arginine (reviewed in

    [21,22]). Shortly thereafter, our laboratory and

    others demonstrated that a soluble enzyme in murine

    macrophages, later puried and named nitric oxide

    synthase, was producing cNO from the amino acid

    arginine [23^25]. At this point, the major compo-

    nents of the cNO/cGMP signaling pathway had

    been identied: nitric oxide synthase produces cNO,

    which activates soluble guanylate cyclase, leading to

    a subsequent increase in the concentration of cGMP.

    3. Signaling with the cNO/cGMP pathway

    Since the initial elucidation of the cNO/cGMP sys-

    tem, many good examples of signal transduction bythis system have come to light, some better charac-

    terized than others. They include: smooth muscle

    relaxation and blood pressure regulation [26]; plate-

    let aggregation and disaggregation [27]; and neuro-

    transmission both peripherally, in non-adrenergic,

    non-cholinergic (NANC) nerves [26], and centrally,

    in the processes of long term potentiation and de-

    pression [28]. Understanding the cNO/cGMP path-

    way, however, requires an understanding of cNO's

    role as a signaling agent, the alternative targets forcNO, the alternative activators of sGC and, natu-

    rally, the targets for cGMP.

    It was initially a surprise that cNO was produced

    physiologically: prior to the demonstration of cNO

    synthesis by nitric oxide synthase, the biological rele-

    vance of cNO was as a pollutant; for example, as a

    component of automobile exhaust. Given the phys-

    ical properties of cNO, however, it is now clear thatcNO is uniquely well suited to its role as a signaling

    agent. Because it is small and carries no charge, cNO

    diuses freely across cell membranes, obviating the

    need for a transport system. cNO is relatively unreac-

    tive for a radical species, so that it can diuse from a

    cell in which it is produced to neighboring cells with-

    out being destroyed before it reaches its target. Be-cause cNO is oxidized to NO32 and NO

    3

    3 under phys-

    iological conditions, no separate mechanism for its

    destruction is required [29^31]; however, at low con-

    centrations of cNO and in the absence of proteins

    and metals which contribute to its destruction, the

    decomposition of cNO will be slow [29]. Most impor-

    tantly, the electronic structure of cNO makes it an

    excellent ligand for heme, allowing it to bind to the

    sGC heme at a low, non-toxic concentration.

    The one well-dened target for cNO, of course, is

    sGC; however, several paths for cNO signal trans-

    duction which do not rely on the production of

    cGMP by sGC have been proposed, though they

    are less clearly dened than the cNO/cGMP pathway.

    First, cNO was shown to inhibit mitochondrial cyto-

    chrome oxidase at concentrations of cNO found

    physiologically [32,33]. Second, cNO was reported

    to activate calcium-dependent potassium channels

    in vascular smooth muscle directly, though it is pos-

    sible that this only happens with levels of cNO higher

    than typically seen in vivo [34]. Third, cNO was

    shown to inhibit activation of NF-UB [35,36].

    Fourth,c

    NO was found to activate G-proteins(such as protooncogene p21ras) by enhancing the

    rate of nucleotide exchange, leading to an increase

    in the GTP-bound form. In fact, a p21ras cysteine

    residue (C118) was shown to be S-nitrosylated in the

    presence of cNO [37^39]. Fifth, caspase, a cysteine

    protease involved in apoptosis, was shown to be in-

    hibited by S-nitrosylation of its active-site cysteine

    [40]. Finally, both hemoglobin and the cardiac calci-

    um release channel (i.e., the ryanodine receptor) were

    shown to be S-nitrosylated in vivo; moreover, this

    change resulted in a modication of their function

    [41^43]. As these alternative cNO targets become bet-

    ter dened, it will be important to ensure that they

    are physiologically relevant. cNO, especially at high

    concentration, can react with O2 through a series of

    reactions to form N2O3, which is a potent nitrosating

    agent reacting capable of reacting with nucleophiles

    such as the sulfur of cysteine residues. As a result, in

    vitro experiments with high cNO concentrations may

    lead to higher than normal levels of S-nitrosocysteine

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    formation. Therefore, while there is no doubt that S-

    nitrosylation occurs in vivo, we believe its physiolog-

    ical signicance will not be established until two ob-

    servations are made: rst, that S-nitrosylation 9 at

    in vivo levels ofc

    NO9

    modies the function oftarget proteins and, second, that in vivo concentra-

    tions of S-nitrosylated proteins can elicit a physio-

    logical response.

    In addition to other targets for cNO, there are

    other potential physiological activators of sGC.

    These fall into two categories 9 non-cNO nitroge-

    nous compounds and carbon monoxide (CO).

    Although most investigators are now convinced

    that cNO itself is the signaling agent which activates

    sGC, there are still some who believe that there are

    other nitrogenous products (not cNO) which acti-

    vates sGC. Many alternatives have been proposed,

    such as nitrosothiols. It is not clear, however, that

    these agents are present in high enough concentra-

    tion in vivo to perform any signicant signaling func-

    tion. Likewise, it has been hypothesized that CO,

    which binds to the sGC heme and weakly activates

    the enzyme, may act as a signaling agent [44^46]. In

    contrast to cNO, which activates sGC approx. 400-

    fold, CO only activates known isoforms of sGC ap-

    prox. 5-fold [47]. Additionally, CO activation re-

    quires saturating concentrations of CO, a clearly

    non-physiological alternative. Although CO is pro-duced by the enzyme heme oxygenase during the

    breakdown of heme, it is dicult to imagine that

    cells can provide an adequate supply of free heme

    (which is toxic to cells) for signaling with CO. In

    the absence of a more CO-sensitive sGC isoform or

    a mechanism to increase the response of sGC to CO,

    we will have to reserve judgment on this potential

    pathway. Such a mechanism may have been found,

    however. It has been shown recently that CO and the

    synthetic compound YC-1 ([48]; see Fig. 4 for the

    structure) synergistically activate sGC to levels sim-

    ilar that of the cNO-stimulated enzyme [49,50]. If a

    physiological counterpart for YC-1 is identied, this

    could be a mechanism by which CO could act as a

    signaling agent.

    Regardless of the species that activates sGC, all

    signal transduction through sGC (and pGC as well)

    takes place through an increased concentration of

    cGMP. Cyclic GMP, like cAMP, is a second messen-

    ger; as such, it requires target proteins to have its

    eect. Moreover, the diversity of targets allows

    cGMP to have wide-ranging eects that can dier

    by cell and tissue type. There are three known targets

    for cGMP which mediate the transmission of thec

    NO/cGMP pathway signal downstream from guany-late cyclase: cGMP-dependent protein kinase [51],

    cGMP-regulated phosphodiesterase [52,53] and

    cGMP-gated ion channels [54]. The rst of these,

    cGMP-dependent protein kinase, phosphorylates tar-

    get proteins in response to an increase in cGMP con-

    centration. For example, in smooth muscle cells,

    cGMP-dependent protein kinase phosphorylates the

    inositol 1,4,5-triphosphate receptor, leading to a de-

    crease in Ca2 concentration and, ultimately, smooth

    muscle relaxation. The second, cyclic nucleotide

    phosphodiesterase, catalyzes the hydrolysis of the

    3P-phosphodiester bond of cAMP and cGMP to yield

    AMP and GMP, respectively. Of the seven known

    families, three (PDE2, PDE5 and PDE6) are allos-

    terically regulated by cGMP and one (PDE3) is in-

    hibited by the binding of cGMP in its substrate site.

    Phosphodiesterases allow crosstalk between cGMP

    and cAMP signaling pathways because they cause

    the concentration of one cyclic nucleotide to inu-

    ence the degradation of the other. The third, cyclic

    nucleotide-gated ion channels, are non-specic cation

    channels found in a variety of tissues. Most notably,

    these channels are found in the retina and in olfac-tory epithelium where they are involved, respectively,

    in visual phototransduction and in olfaction.

    4. The nucleotide cyclase family: sGC, pGC and AC

    Just as sGC is a component of the larger cNO/

    cGMP signaling pathway, so is it a member of a

    larger group of related enzymes: the nucleotide cy-

    clases. This family of enzymes converts nucleotide

    triphosphates (GTP and ATP) to cyclic nucleotide

    monophosphates (cGMP and cAMP) and includes

    adenylate cyclase (AC), particulate guanylate cyclase

    (pGC) and soluble guanylate cyclase. As a family,

    these enzymes are involved in a broad array of signal

    transduction pathways mediated by the cyclic nucleo-

    tides cAMP and cGMP-vision, blood pressure regu-

    lation, response to hormones and many others. An

    evolutionarily conserved catalytic domain denes

    these three groups of enzymes as a single family; in

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    other words, the genes that code for the catalytic

    portions of these enzymes are derived from a com-

    mon ancestor. This is unsurprising, given that they

    catalyze virtually identical reactions. Moreover, be-

    cause of their relatedness and similar function, in-

    sights into the structure, catalytic mechanism andpossibly even regulation of one member of this fam-

    ily may be generalizable to other members.

    Adenylate cyclase, for example, has been studied

    for nearly four decades. As a result, there is a rich

    literature of ndings with AC that may, because of

    the similarity of AC to sGC, prove useful in under-

    standing sGC. Unlike the guanylate cyclases, which

    contain both receptor and catalytic functions within

    the same protein, ACs are stimulated by hormone

    receptors acting through heterotrimeric G-proteins

    [55]. AC is an integral membrane protein and is as-

    sumed to be monomeric. All of the known mamma-

    lian isoforms are activated by GsK; other activators

    are isoform specic [56]. AC is also activated by the

    small molecule forskolin, a diterpene derivative iso-

    lated from the Indian plant Coleus forskohli. Forsko-

    lin was originally shown to have a variety of cardio-

    vascular eects [57] and was later shown to activate

    AC [58]; it has served as a useful tool in the study of

    AC, but no mammalian counterpart has been iden-

    tied. As shown in Fig. 2, AC contains two groups

    of six transmembrane helices and two intracellular

    loops. The intracellular loops each contain a region

    9 C1 and C2, respectively 9 now known to come

    together in a head-to-tail fashion to form a function-

    al catalytic domain. (Because the domain is made upof two regions from a single polypeptide chain, it is

    sometimes referred to as `pseudo-heterodimeric'.)

    Two crystal structures of catalytic domains have, in

    fact, been solved recently. The rst was a structure of

    a C2C2 homodimer [59], the second of a C1C2 heter-

    odimer [60]; both were engineered constructs which

    lacked the transmembrane domains and were, thus,

    soluble. The crystal structure of C1C2 supports the

    conclusion that this pseudo-heterodimeric catalytic

    domain has two pseudo-symmetric binding sites:

    one binds substrate, the other forskolin. In addition,

    GsK binds to a site in the plane of the catalytic do-

    main opposite the substrate binding site.

    Particulate guanylate cyclase has also provided in-

    sight into the structure and function of sGC. After

    the purication of cGMP and guanylate cyclase, it

    was observed that guanylate cyclase activity could be

    separated into a membrane-bound (particulate) and

    cytosolic (soluble) fractions. As its name implies,

    particulate guanylate cyclase is the membrane-bound

    Fig. 1. The guanylate cyclase reaction and cNO signal transduction.

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    guanylate cyclase. In a sense, pGC is a prototypic

    cell-surface receptor enzyme: it contains an extracel-

    lular peptide receptor domain and an intracellularcatalytic domain separated by a single transmem-

    brane domain (Fig. 2). pGC is now generally thought

    to be a homodimer of subunits of approx. 120 kDa

    [61]. Seven subclasses of mammalian pGC (GC-A

    through GC-G) have been identied. Three of these

    have known peptide ligands (GC-A, atrial natriuretic

    peptide and brain natriuretic peptide; GC-B, C-type

    natriuretic peptide; GC-C, the heat stable enterotox-

    ins ofEscherichia coli and guanylin); the rest (GC-D,

    olfactory epithelium; GC-E and GC-F, retina;

    GC-G lung, intestine, skeletal muscle) are so-called

    `orphan' receptors because their activating ligands

    have not been determined [55,61,62]. For the pur-

    poses of understanding sGC, pGC is useful because

    it helps to dene the characteristics that are specic

    to guanylate cyclases, for example, the identity of

    the amino acids which allow the dierent members

    of the nucleotide cyclase family to distinguish GTP

    from ATP [63]. Also, given the similarity of their

    catalytic domains, it is possible that the general

    mechanism of activation of pGC will be similar to

    that of sGC.

    5. Soluble guanylate cyclase genetics and isoforms

    Since the original identication of sGC, a great

    deal of information about sGC genetics has become

    available. Thus far, a total of 12 sGC cDNAs have

    been cloned from ve dierent species (for identity

    and similarity comparisons see Fig. 3). The rst were

    cloned on the basis of protein sequence from puried

    bovine and rat K1L1 heterodimer. The cDNA se-

    quences for bovine and ratL

    1 subunits, respectively,

    were reported in 1988 [64,65], followed by the bovine

    and rat K1 subunits in 1990 [66,67]. Subsequently,

    K1L1 pairs were cloned from Homo sapiens (origi-

    nally called K3 and L3) ([68,69], localized to chromo-

    some 4q32, [70]), Drosophila melanogaster [71^73]

    and the sh Oryzias latipes [74]. Putative sGC se-

    quences exist in the Caenorhabditis elegans genome,

    but these have yet to be conrmed with any empiri-

    cal studies beyond the sequencing itself.

    Fig. 2. Schematic representation of sGC, pGC and AC. Transmembrane helices are shown in purple, the conserved sGC, pGC and

    AC catalytic regions are shown in orange and the conserved NH2-terminal domains of the sGC K1 and L1 subunits are shown in

    green. The sGC L1 subunit also binds prosthetic heme, which is ligated by histidine 105.

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    In addition to the cloning of K1L1 pairs, the

    cDNAs for two additional sGC subunits have been

    cloned: L2 from rat kidney [75] and K2 from human

    fetal brain ([76], localized to chromosome 11q21-q22

    [77]. In transient transfection experiments, the K2

    subunit has been shown to form an active hetero-

    dimer with the L1 subunit [76]. Although the L2 sub-

    unit has been recently reported to form an active

    heterodimer with the K1 subunit in transient expres-

    sion experiments [78], similar experiments in our lab-

    oratory (unpublished results) and others (unpub-

    lished results, see [79,80]) were unable to generate

    an active heterodimer containing the L2 subunit.

    Thus, the issue of the L2 subunit partner remains

    to be conclusively proven. A unique feature of the

    L2 subunit is that its predicted amino acid sequence

    contains a COOH-terminal consensus sequence

    (-CVVL) for isoprenylation/carboxyl-O-methylation

    [75], but it is not known whether such a modication

    exists on the mature polypeptide. Because full-length

    sequences of the K2 and L2 subunits from species

    other than the ones from which they were originally

    isolated have yet to be identied, one might question

    their signicance. However, a partial sequence for

    the bovineK

    2 has been determined [76] and a puta-

    tive L2 subunit partial sequence exists in a mouse

    placenta EST database (GenBank accession No.

    AA023957, from the Soares mouse placenta library).

    These subunits, then, may well be common to all

    mammals and perhaps to other sGC-containing spe-

    cies.

    The potential existence of novel sGC isoforms (i.e.,

    in addition to the K1L1) raises an important issue

    about the distinction between sGC subunits and

    Fig. 3. Sequence identity and similarity among the predicted amino acid sequences of known sGC subunits. Translated cDNA se-

    quences for the indicated sGC subunits were compared using the program Gap with gap weight = 12 and length weight= 4 (Wisconsin

    Package Version 9.1, Genetics Computer Group (GCG), Madison, WI, USA). The denitions of the three letter species codes above

    are: bov, bovine, Bos taurus ; hum, human, H. sapiens ; rat, Rattus rattus ; fsh, Medaka sh O. latipes ; dro, D. melanogaster. GenBank

    accession numbers for the cDNA sequences are as follows: bovine K1, X54014; human K1, X66534; rat K1, M57405; O. latipes K1,AB000849; Drosophila K1, U27117; human K2, X63282; bovine L1, Y00770; human L1, X66533; rat L1, M22562; O. latipes L1,

    AB000850; Drosophila L1, U27123; rat L2, M57507.

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    sGC isoforms. Our denition of an sGC isoform is a

    catalytically competent heterodimer (in principle,however, it could be a homodimer). For AC (which

    exists as a monomer) and pGC (which exists as a

    homodimer), the identication of dierent isoforms

    9 with dierent tissue or developmental distribution,

    dierent regulation and/or dierent kinetic parame-

    ters 9 has been relatively simple: each distinct gene

    product is a distinct isoform. For sGC, the picture is

    somewhat more complicated. Given that four distinct

    sGC subunits have been cloned, there are 16 possible

    homodimeric and heterodimeric combinations of

    sGC subunits. Each of these combinations, if shown

    to exist in vivo, could be rightly called an isoform.

    The only isoform, therefore, that has been shown to

    exist at the protein level in animal tissues is the K1L1.

    Again, as mentioned above, putative K2L1 and K1L2

    isoforms have been demonstrated in transient mam-

    malian expression experiments [76,78], but until these

    subunits are shown to exist in vivo and, ideally, pu-

    ried from tissue sources, they cannot be considered

    bona de sGC isoforms. Because the role (even the

    existence) of sGC isoforms other than the K1L1 is

    poorly understood, our discussion of sGC character-

    istics will, by necessity, focus on the K1L1 isoform.

    An additional curiosity about the heterodimeric

    nature of sGC is the apparent requirement for co-expression of sGC subunits. For example, sGC K1

    and L1 subunits, when expressed separately in tran-

    sient mammalian expression systems, have no guany-

    late cyclase activity [67,73,81]. In fact, there is still no

    detectable guanylate cyclase activity when the soluble

    fractions from cells expressing the K1 and L1 subu-

    nits individually are mixed [73,81]. Only when the K1

    and L1 subunits are co-expressed (i.e., produced in

    the same cell) does basal and cNO-stimulated activity

    result [67,73,81]. The sGC requirement for co-expres-

    sion is similar to that of bacterial luciferase, which

    has been investigated extensively in the Baldwin lab-

    oratory ([82], for a review of co-translational protein

    folding, see [83]). It is possible that sGC, like bacte-

    rial luciferase, has one subunit that can, in addition

    to normal heterodimerization, form a kinetically

    trapped homodimer or fold to a dimerization-incom-

    petent monomer.

    6. Purication from mammalian tissue and expression

    systems

    Although the existence of other isoforms of sGC

    besides the K1L1 has been suggested by cloning and

    expression experiments, only the K1L1 has been pu-

    ried from mammalian tissue. In the past, a number

    of dierent sources for sGC, including lung, liver,

    and brain, were used for purications. Early puri-

    cations (see, for example, [84,85]) produced enzyme

    with little or no bound heme [86]. Because of the

    high sGC content and ready availability, bovine

    lung is now used as a source for purication from

    mammalian tissue. The groups currently purifying

    sGC from bovine lung use a variety of purication

    procedures [47,87^92]. Most of the more recent pu-

    rications have been modied to increase the yield of

    heme-containing sGC. In addition, yields have been

    increased: purication from tissue can yield up to 3^

    5 mg of pure protein (S. Kim, M.A. Marletta, un-

    published data; [92]).

    Because isolation of sGC from bovine lung is typ-

    ically arduous, there has been strong motivation for

    Fig. 4. Activators and inhibitors of sGC. Shown in panel A are

    compounds known to interact directly with sGC. As described

    in the text, YC-1 is an activator of sGC that acts synergistically

    with CO to yield activity comparable to that observed withcNO. ODQ is a relatively potent inhibitor of the enzyme,

    although the mechanism of action is not clearly established. It

    has been reported to oxidize the ferrous heme moiety [124].

    Shown in panel B are compounds that have been reported to

    aect catalytic activity. Methylene blue and LY83583 are re-

    ported to inhibit the enzyme and isoliquiritigenin has been re-

    ported to activate the enzyme. Studies with these compounds

    have typically been carried out with crude preparations of the

    enzyme and so the exact mechanism of action is not clear.

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    the development of alternative sources of sGC,

    namely, the development of expression systems.

    Both transient and stable expression of sGC in mam-

    malian expression systems using COS cells (an Afri-

    can green monkey kidney cell line) and HEK293 cells(a human embryonic kidney cell line) has successfully

    produced active cyclase in several laboratories

    [67,73,76,78,81]. Unfortunately, while these systems

    have been useful for exploring the catalytic activity

    of sGC isoforms and mutants, the low level of pro-

    tein produced has made them unsuitable as sources

    of puried protein. In order to take advantage of an

    expression system that can generate amounts of sGC

    suitable for purication, several labs (including ours)

    have used expression and purication of sGC in the

    baculovirus/Sf9 system [93^96]. In general, purica-

    tion of sGC from baculovirus/Sf9 expression systems

    is more straightforward because it requires a lower

    purication factor. Obviously, the ability to express

    heterodimeric sGC at high levels in E. coli would be

    a tremendous boon to the eld. Many laboratories

    have doubtless tried to do just that and have been, to

    this point, unsuccessful 9 and here we can judge

    only by our own experience, given the lack of pub-

    lished reports 9 because sGC tends to form insolu-

    ble inclusion bodies when expressed in E. coli. To

    our knowledge, the only sGC construct that has

    been successfully overexpressed in E. coli is the L1subunit heme binding region that has been expressed

    and puried in our laboratory [97,98].

    7. Heme environment

    Although there has been some debate in the past,

    it is clear now that sGC binds one protoporphyrin

    IX type heme per heterodimer. The early history of

    the determination that sGC is a hemoprotein is re-

    viewed in [99]. After initial observations that heme

    was needed to allow stimulation of sGC by cNO in

    crude preparations [100,101], sGC was shown to con-

    tain a prosthetic heme moiety that was important in

    activation by cNO and cNO donors [85,102^104]. Be-

    cause the early purications yielded sGC with heme

    stoichiometries less than one (often far less than one)

    [86], it was assumed that the heme stoichiometry was,

    in fact, one. After the cloning of both K and L sGC

    subunits and the cloning of some of the pGC iso-

    forms, it became clear that the COOH-terminal por-

    tion of both sGC subunits was most likely catalytic

    in nature. In addition, as our laboratory noted

    [47,87], the NH2-terminal portions 9 upstream

    from the conserved catalytic regions9

    of both theK and L subunits were homologous to each other

    (i.e., 30% identical and 39% similar), though less ho-

    mologous at the extreme NH2 terminus. This obser-

    vation led us to hypothesize that both subunits might

    bind heme. Initially, our heme stoichiometry deter-

    mination for sGC supported that hypothesis [87];

    however, recent work in our laboratory has demon-

    strated that there had been an error in the quanti-

    tative amino acid analysis used to determine sGC

    concentration. As a result, we have denitively deter-

    mined the heme stoichiometry to be one heme per

    heterodimer ([93]; S. Kim, P.E. Brandish, M.A. Mar-

    letta, unpublished data).

    The hypothesis that the sGC heme is ligated by a

    histidine residue, much like the well-studied heme

    proteins hemoglobin and myoglobin, is not new;

    however, it has been only within the last several

    years that that suspicion has been conrmed and

    the ligand identied as histidine 105 of the L1 sub-

    unit (the numbering applies to bovine, human and

    rat L1). Early observations of the sGC heme Soret

    (i.e., the maximal heme absorbance peak) as isolated

    [102] hinted that sGC was likely to bind heme in away similar to deoxyhemoglobin and deoxymyoglo-

    bin, namely, as a ve-coordinate histidyl complex. It

    was not until two relatively recent observations were

    made that this picture began to become clear. First, a

    mutant of sGC in which histidine 105 of the bovine

    L1 subunit had been mutated to phenylalanine

    (H105F) and transiently expressed in COS cells was

    found to have lost stimulation by cNO and, in addi-

    tion, to lack any heme absorbance [94]. Second, elec-

    tronic absorption spectroscopy on pure sGC revealed

    a spectrum that was entirely consistent with a histi-

    dine-ligated heme, namely, a Soret peak at 431 nm

    and a broad K/L band at 562 nm [47,105]. Additional

    observations with electronic absorption spectroscopy

    [106], magnetic circular dichroism spectroscopy [106],

    resonance Raman spectroscopy (RR) [107,108] and

    Fourier transform infrared spectroscopy (FTIR)

    [109] conrmed that the heme ligand was histidine.

    Subsequent observations in our laboratory deni-

    tively identied L1-His105 as the heme ligand: the

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    NH2-terminal portion of the L1 subunit (L11385) ex-

    pressed and puried from E. coli was capable of

    binding heme with spectral characteristics virtually

    identical to the heterodimeric enzyme [97]; mutants

    of His105 did not bind heme [98]; and heme bindingto the H105G mutant could be rescued by including

    imidazole during growth and purication [98].

    The majority of groups studying sGC purify the

    enzyme in a ve-coordinate, high-spin histidyl com-

    plex that resembles deoxyhemoglobin and deoxy-

    myoglobin in terms of ligation, oxidation state and

    spectral characteristics. Unlike hemoglobin and my-

    oglobin, however, sGC has an extremely low anity

    for oxygen, which fails to bind to the sGC heme even

    under 100% O2 [47]. The molecular basis for this

    property is still under investigation. The failure of

    sGC to bind oxygen enables sGC to act as a receptor

    for cNO by allowing cNO to bind directly to the

    ferrous-deoxy heme; in contrast, cNO will react

    with ferrous-oxy complexes (like oxyhemoglobin) to

    give nitrate and ferric heme [110]. The Soret position

    for sGC heme (431 nm) coupled with a broad K/L

    peak at 562 nm [47,105] is consistent with ve-coor-

    dinate high-spin histidyl-ligated proteins and model

    compounds [111]. Despite this seeming consensus,

    however, there have been reports that sGC, as iso-

    lated, is a mixture of ve-coordinate high-spin histid-

    yl heme and six-coordinate low-spin bis-histidylheme [95,106,108,112]. It is not clear whether heme

    reconstitution, or some other dierence in procedure,

    is the cause of these multiple populations of enzyme.

    Extensive study of the sGC heme in its cNO-bound

    (NO-sGC) and CO-bound (CO-sGC) forms has giv-

    en us a clear picture of the characteristics of these

    species. NO-sGC is a ve-coordinate nitrosyl heme,

    in which the Fe-His bond has been broken

    [47,92,107,108,112,113]. A combination of electronic

    absorption spectroscopy, electron paramagnetic res-

    onance spectroscopy (EPR) and RR has been used to

    show this. When CO is bound to the sGC heme, the

    Fe-His bond apparently remains intact, forming a

    six-coordinate heme [47,92,106,108,112]. Observa-

    tions by electronic absorption spectroscopy and RR

    have demonstrated this to be the case. Table 1 shows

    a summary of electronic absorption spectroscopy

    maxima for sGC in its as isolated, CO-bound andcNO-bound forms; Table 2 shows RR and FTIR

    vibrations for the heme ligands of these forms.

    8. Catalysis

    Several lines of evidence have converged to unam-

    biguously dene the catalytic domain of sGC : se-

    quence comparisons to AC and pGC to dene anevolutionarily conserved region, site-directed muta-

    genesis to produce inactive enzyme, the construction

    of deletion mutants that retain catalytic function,

    and the creation of mutants with altered substrate

    specicity. The rst method that was used to dene

    the catalytic regions of AC, pGC and sGC was align-

    ment of their predicted amino acid sequences (once

    the cDNA sequences became available). These align-

    ments revealed a highly homologous region approx.

    200 amino acids long that was common to all three

    enzymes. Two regions were found in the AC se-

    quence (C1 and C2), one region in pGC monomers

    and one region in each half of the sGC heterodimer

    (K1 and L1). Several additional pieces of evidence

    showed that these regions in the K1 and L1 subunits

    of sGC came together to form the catalytic domain.

    First, the mutation of two aspartic acid residues in

    the sGC K1 subunit each abolished catalytic activity

    in co-expressed heterodimers [114]. Second, Wedel

    and coworkers demonstrated that co-expressed

    NH2-terminal deletion mutants of K1 (deletion of

    the rst 366 amino acids) and L1 (deletion of the rst

    305 amino acids) retained catalytic activity [115]. Fi-nally, any remaining doubt that these regions formed

    the catalytic domain was removed by the recent nd-

    ing that sGC can be made into an cNO-responsive

    adenylate cyclase with changes to these regions

    alone: by mutating one residue in the K1 subunit

    and two in the L1 subunit in the putative catalytic

    regions that were predicted 9 on the basis of the AC

    Table 1

    Peak positions and extinction coecients from electronic ab-

    sorption spectroscopy of sGC

    sGC form Soret L K Por-Fea

    Ferrous 431 (111) 562 (12) 770 (0.2)

    CO complex 423 (145) 541 (12) 567 (12)

    NO complex 399 (85) 537 (11) 572 (11)

    Ferric 391 (110) 511 (14) 642 (4)

    Values for this table were drawn from [47,105]. Extinction coef-

    cients (mM31 cm31) are given in parentheses.aPor-Fe refers to the putative porphyrin to iron charge transfer

    band.

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    catalytic domain crystal structures 9 to be important

    in nucleotide base binding [59,60], Sunahara and

    coworkers were able to change the nucleotide specif-

    icity of sGC [116].

    Many aspects of the catalytic mechanism of sGCare poorly understood. The type of reaction cata-

    lyzed by sGC 9 the attack of an activated hydroxyl

    on the K-phosphate of a nucleotide triphosphate 9 is

    a common one. This is, for example, the same reac-

    tion catalyzed in the polymerization of deoxynucleo-

    tide triphosphates in the synthesis of DNA; however,

    in the case of DNA it is an intermolecular attack of

    the 3P-hydroxyl on an K-phosphate. In fact, after

    publication of the AC C2C2 structure, it was sug-

    gested that AC catalytic domain contains a fold sim-

    ilar to the `palm' domain in prokaryotic DNA poly-

    merase I [117]. It is possible that some of the features

    of the DNA polymerase mechanism will hold true

    for the nucleotide cyclases. Thus, the outline of the

    reaction is clear: the 3P-hydroxyl is activated in some

    way to become more nucleophilic and attacks the K-

    phosphate, causing the release of the L- and Q-phos-

    phates as inorganic pyrophosphate. What is not clear

    is how the 3P-hydroxyl is activated, whether pyro-

    phosphate release is concerted or proceeds through

    a pentavalent phosphorous transition state and what

    role divalent metal cations play in the mechanism.

    Despite these questions, however, some possibilitiesfor the sGC mechanism have been eliminated. For

    example, the displacement of PPi by the 3P-hydroxyl

    of GTP has been shown to occur with inversion of

    stereochemistry, which indicates that the reaction

    proceeds by a single displacement reaction [118].

    9. Model of sGC structure and function

    In order to synthesize some of the latest sGC de-

    velopments into a model 9 albeit a working model

    9 we have divided sGC enzymology into four sub-

    areas that represent what are, in our view, the most

    important open questions: structure, activation, cat-

    alytic mechanism and deactivation.

    No X-ray crystal structure of sGC or of any sGC

    domain has been solved; as a result, any model of

    sGC structure must draw heavily on related proteins:

    The high degree of homology (approx. 30% identity

    and 40% similarity) between the catalytic domain of

    AC and the catalytic domain of sGC, in addition to

    their almost identical catalytic function, suggests that

    these catalytic domains are descended from a com-

    mon ancestor and, as such, are likely to share a

    common three-dimensional fold. In fact, the Hurley

    group has used the AC catalytic domain structure

    determined in his laboratory to create a homology

    model of the catalytic domain of sGC [63]. Such

    models have been used to correctly predict the amino

    acid residues that control the substrate specicity of

    both ACs and GCs. For example, the substrate spe-cicity of retinal guanylate cyclase (a pGC) was

    changed from GTP to ATP [119], sGC was con-

    verted into an cNO-activated AC and AC was con-

    verted into a non-specic (but still GsK-activated)

    purine nucleotide cyclase [116]. As a result, the

    X-ray crystal structures of the AC C1C2 heterodimer

    [60] and C2C2 homodimer [59] appear to be excellent

    models for the sGC catalytic domain. We would con-

    cur, then, with the prediction made by others [63],

    that the COOH-terminal portions of the K and L

    sGC subunits form a head-to-tail catalytic domain.

    If the pseudo-heterodimeric AC catalytic domain is

    any guide, sGC may well have only one substrate-

    binding site.

    As for the rest of the protein, the lack of direct

    evidence (even by analogy) makes it more dicult to

    choose among the possibilities ; still, there are nd-

    ings upon which we can continue to build the model.

    The homology between the K and L subunits of sGC

    (33% identity and 42% similarity overall, although

    Table 2

    Resonance Raman and FTIR vibrations for sGC heme ligands

    sGC form cm31 Description

    Ferrous

    X(Fe-His) 204 Fe-His stretch

    CO complexX(Fe-CO) 472 Fe-CO stretch

    N(Fe-C-O) 562 Fe-C-O bending

    X(C-O) 1987 C-O stretch

    NO complex

    X(Fe-NO) 525 Fe-NO stretch

    X(N-O) 1677 N-O stretch

    The values in this table were drawn from [107,109]. Similar val-

    ues have been reported by other laboratories [91,92,108,112];

    some dierences have been reported for reconstituted sGC

    [91,108,112].

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    higher in the COOH-terminal catalytic region than in

    the NH2-terminal regulatory region) suggests that

    the fold of the two subunits may be pseudo-symmet-

    rical. The K and L subunits of sGC have a predicted

    amphipathic helical region just NH2-terminal to thepredicted catalytic domain. These helices may be

    evolutionarily related to the predicted amphipathic

    helices NH2-terminal to the catalytic region of

    pGC, which have been demonstrated to mediate di-

    merization [120]. This conclusion is supported by the

    homodimerization of the L11385 [97] and by the di-

    merization of K1 and L1 subunit NH2-terminal dele-

    tion mutants [115], which retain the putative dimeri-

    zation helices. The conformational change which

    shifts the AC catalytic domain to its active state

    upon binding of GsK may be similar to the confor-

    mational change which shifts the sGC catalytic do-

    main to its active state when cNO binds to the sGC

    heme. It is possible, then, that the sGC heme domain

    (the NH2-terminal portion of the L subunit) abuts

    the catalytic domain in the same way that GsK abuts

    the AC catalytic domain [60]. This would put both

    the K and L subunit NH2-terminal domains in the

    plane of the catalytic domain (which is roughly

    disk-shaped) 9 the heme domain opposite the sub-

    strate site (in the same way GsK is opposite the AC

    substrate site) and the K subunit NH2-terminal por-

    tion next to the substrate site (opposite the site anal-ogous to where forskolin binds in the AC structure).

    Our model of sGC activation by cNO does not

    dier substantially from the following simplied pic-

    ture. Binding of cNO to the sGC heme severs the

    bond between the heme Fe and the ligating histidine,

    presumably puckers the heme toward the distal nitro-

    syl ligand and, through some combination of

    changes in heme geometry, causes a conformational

    change that activates the enzyme. Recent work, how-

    ever, has rened our view of the heme environment

    of sGC in a way that allows us to rene our working

    model of activation. As mentioned above, YC-1 is an

    activator of sGC that has the interesting property of

    synergistically activating sGC in the presence of CO

    (see Fig. 4 for the structure of YC-1 and other sGC

    activators and inhibitors). Electronic absorption

    spectroscopy studies have shown that sGC activated

    by YC-1 and CO has a six-coordinate heme, even

    though its level of activity is similar to the cNO-acti-

    vated enzyme [49,121]. Therefore, the breaking of the

    Fe-His bond which occurs with cNO binding may be

    correlated with the molecular event that brings about

    activation, but may not directly cause it. In other

    words, it is possible that the breaking of the Fe-His

    bond can be eliminated as a step in the activation ofsGC. There may be, then, some other eect of cNO

    binding to the heme that leads to activation. We are

    currently pursuing this possibility in our laboratory.

    Our model of the sGC catalytic mechanism is

    based largely on proteins that catalyze similar reac-

    tions. In addition to this, we have incorporated what

    is known about the nucleotide cyclase catalytic mech-

    anisms through crystal structures and mutational

    studies. The active site functions/characteristics that

    need to be elucidated are as follows: the number of

    substrate binding sites; the number of Mg2 ions

    participating in substrate binding and/or catalysis;

    the amino acid residues important for substrate bind-

    ing; the amino acid residues involved in Mg2 bind-

    ing; and the amino acid residues involved in the

    catalytic mechanism (e.g., activation of the 3P-OH

    and transition-state stabilization). There are almost

    certainly no more than two substrate-binding sites in

    sGC; given that the catalytic domain of sGC, like

    that of AC, is made up of homologous but non-iden-

    tical components, we hypothesize that there is only

    one substrate-binding site, as in AC. This hypothesis

    also ts in well with the obvious asymmetry of thesGC regulatory region: the L1 subunit binds heme,

    the K1 does not. As for important residues, the mu-

    tation of rat K1D513 and K1D529 each abolished

    catalytic activity when transiently expressed with

    wild-type L1 subunit [114], but it is dicult to pin-

    point the role that these residues may be playing

    without further study.

    The nal component of our model of sGC struc-

    ture and function is the question of deactivation,

    which remains an open question because of the fol-

    lowing observation: the deactivation of sGC in or-

    gan bath studies has suggested that the half-life of

    sGC activation is on the order of minutes [17],

    whereas the half-lives of most nitrosyl-heme com-

    plexes are longer. Two hypotheses have been ad-

    vanced to explain this discrepancy. First, the sGC

    heme may simply have dierent characteristics that

    allow cNO to dissociate more rapidly. Second, there

    may be some extrinsic factor 9 a small molecule or

    protein 9 which assists in the deactivation either by

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    directly interacting with the ferrous-nitrosyl heme or

    via an allosteric eect that increases the rate of cNO

    dissociation from the heme. Studies of the sGC

    heme, for example, showed that its properties were

    dierent from most histidine-ligated heme proteinsand model compounds: the half-life (extrapolated

    to 37C) for cNO dissociation was on the order of

    2 min [122]. Recent work in our laboratory has

    shown that thiol compounds like glutathione, at con-

    centrations similar to that found in vivo, increase the

    rate of cNO release from the heme [93]. Compounds

    that trap cNO, like oxyhemoglobin, also increase the

    rate of cNO release from the sGC heme [93,122].

    There has been a report that the presence of Mg2-

    GTP increases the rate of deactivation [123]; how-

    ever, we have found that a precipitate which forms

    under these conditions complicates the determination

    of such rates [93]. We believe, therefore, that the

    relatively fast cNO o-rate for the sGC heme [122]

    and contribution of thiol compounds like glutathione

    account for most, if not all, of the in vivo rate of

    deactivation.

    10. Conclusion

    We have attempted in this review to provide some

    insight into the structure and function of solubleguanylate cyclase. In doing so, we have placed sGC

    in its larger context by discussing the history of the

    sGC eld, the physiological importance of the cNO/

    cGMP pathway and its components, and the nucleo-

    tide cyclase family to which sGC belongs. We have

    delved into the current understanding of sGC by

    discussing what is known about sGC isoforms, ex-

    pression and purication, heme environment and cat-

    alysis. And nally, we have presented a working

    model of sGC structure, activation, catalytic mecha-

    nism and deactivation. Naturally, a great deal of

    work remains to be done to complete our under-

    standing of sGC. Two important milestones in

    achieving that progress will be the identication

    and characterization of sGC subunits and isoforms

    from several species and the development of an sGC

    expression system capable of producing large quanti-

    ties of the heterodimeric enzyme. With or without

    these breakthroughs, the most pressing problems to

    address for sGC are : (1) determining the structure,

    (2) understanding the catalytic mechanism and (3)

    piecing together the molecular details of activation

    and deactivation. As these questions are answered,

    a complete view of sGC structure and function will

    emerge.

    Acknowledgements

    We would like to thank all of the Marletta lab for

    many thought-provoking discussions and for their

    insightful comments on this manuscript.

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