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The Lighter Side Good Protein Synthesis (To the Tune of ‘‘Good King Wenceslaus’’)* h S Received for publication, May 5, 2011 Kevin Ahern‡ Dept. of Biochemistry & Biophysics, Oregon State University, Corvallis, Oregon 97331 Amino acids cannot join By themselves together They require ribosomes To create the tether All the protein chains get made ‘Cording to instruction Carried by m-R-N-A In peptide bond construction Small subunit starts it all With initiation Pairing up two RNAs At the docking station Shine Dalgarno’s complement In the 16 esses Lines the A-U-G up so Synthesis commences Elongation happens in Ribosomic insides Where rRNA creates Bonds for polypeptides These depart the ribosome Passing right straight through it In the tiny channels there Of the large subunit Finally when the sequence of One of the stop codons Parks itself in the A site Synthesis can’t go on P-site RNA lets go Of what it was holding So the polypeptide can Get on with its folding *Copyright Ó 2011 Kevin Ahern h S Additional Supporting Information (an mp3 file) may be found in the online version of this article. ‡To whom correspondence should be addressed. Tel.: 541-737-2305. E-mail: [email protected]. DOI 10.1002/bamb.20539 This paper is available on line at http://www.bmbd.org 468 Q 2011 by The International Union of Biochemistry and Molecular Biology BIOCHEMISTRY AND MOLECULAR BIOLOGY EDUCATION Vol. 39, No. 6, pp. 468, 2011

Good protein synthesis (to the tune of “good king wenceslaus”)

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Page 1: Good protein synthesis (to the tune of “good king wenceslaus”)

The Lighter Side

Good Protein Synthesis (To the Tune of ‘‘Good King Wenceslaus’’)*hS

Received for publication, May 5, 2011

Kevin Ahern‡

Dept. of Biochemistry & Biophysics, Oregon State University, Corvallis, Oregon 97331

Amino acids cannot joinBy themselves togetherThey require ribosomesTo create the tether

All the protein chains get made‘Cording to instructionCarried by m-R-N-AIn peptide bond construction

Small subunit starts it allWith initiationPairing up two RNAsAt the docking station

Shine Dalgarno’s complementIn the 16 essesLines the A-U-G up soSynthesis commences

Elongation happens inRibosomic insidesWhere rRNA createsBonds for polypeptides

These depart the ribosomePassing right straight through itIn the tiny channels thereOf the large subunit

Finally when the sequence ofOne of the stop codonsParks itself in the A siteSynthesis can’t go on

P-site RNA lets goOf what it was holdingSo the polypeptide canGet on with its folding

*Copyright � 2011 Kevin AhernhS Additional Supporting Information (an mp3 file) may be

found in the online version of this article.‡ To whom correspondence should be addressed.

Tel.: 541-737-2305. E-mail: [email protected].

DOI 10.1002/bamb.20539 This paper is available on line at http://www.bmbd.org468

Q 2011 by The International Union of Biochemistry and Molecular Biology BIOCHEMISTRY AND MOLECULAR BIOLOGY EDUCATION

Vol. 39, No. 6, pp. 468, 2011