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USO OE_ MARCAOORES M~LECULARES (RAPO) PARA AVAlIAÇAO DE PUREZA GENETICA EM MILHO (Zea mays l.). César Cruz de Carvalho', Claudinei Andreoli 2 , Sidney Netto Parentoni 2 , Maurício A. Lopes 2 , L.R. Goulart' e Edilson Paiva 2 1 Curso de Pós Graduação em Genética e Bioquímica. DEGEB-UFU . Universidade Federal de Uberlândia - Uberlândia MG 2 EMBRAPAI CNPMS ' . Núcleo de Biologia Aplicada. Sete Lagoas, MG. A produção de sementes de milho híbrido (Zea mays L.) requer a remoção completa de pendões do parental fêmea antes da polinização. O despendoamento incompleto deste parental produz "selfs" e "sibs" que na próxima geração resultam em plantas menos vigorosas e de baixa produtividade, diminuindo os g.anhos genéticos. Este estudo objetivou avaliar o potencial da técnica de reação em cadeia da polimerase com "primers" aleatórios (RAPO) para determinação de pureza genética em ~llho. Os materiais genéticos utilizados foram os híbridos simples femea (HS 200) e macho (HS-201 M) parentais do híbrido duplo BR-201. Foram empregados seis tratamentos que consistiam em diferentes niveis de contaminação (O, 1, 3, 5, 8 e 10%) do parental fêmea HS 200. O ONA utilizado para amplificação por RAPO, foi obtido de folhas de um conjunto de 100 plântulas de cada tratamento. Foram testados 480 "primers" (OPERON, Alameda. CAl· De todos 0$ "primers" utilizados somente o CCC- 33 originou uma banda de aproximadamente 1.584 pb que apresentou variação de intensidade em relação ao nível de contaminação. Esta banda permitiu detectar com clareza níveis de contaminação acima de 10%. Suporte Financeiro: EMBRAPNCNPMS GENETIC DIVERSITY OF CASSAVA (MANIHOT ESCULENTA CRANTZ) IN A GERMPLASM COLLECfIO]'J ASSESSED BY RAPO ASSA Y I. Luiz J,c.I:!. Carvalhoz, I:!arbara A Sehaal3*, Wania M.A. Fukuda 4. CENARGEN/EMBRAPA Brasilia-OF. Department of Biology - Washington University St Louis-MO, USA CNPMF/EMBRAPA, Cruz das Almas-Ba. Geographie population structure of cassava gennplasm eolleetion was assessed by RAPO markers. Fifty nine eassava accessions represeting the World Core Colleetion and seven geographic regions in one of the center of diversity of eassava were used. Phenetie analysis discriminated nine distinct clusters, two c1usters from Colombia, two c1usters from Brazil and five clusters of distinct regions in Brazil. None of the other representative individuais from the other countries showed distinet clusters. This population structurc represents the genetie diversity of cassava germplasm in the World Core Colleetion, and confirms lhe high genetic diversity in different regions in Brazil. lt is a1so inferred that accessions originated from Cerrados. Litoral, and Sub Tropics are well represented in the World Core Collection, but not the other regions. Oegree 01' genetic diversity within individuais indicated higher values for nucleotide diversity (2.7%) in the Brazilian collection than in the World Core Collection (2,1 %). From the geographic regioos of Brazil, it is possible to distinguish three major source of genetic diversity. One region, the Cerrados arca, with lirnited diversity (0.6% of nucleotidc diversity per site in the genome), a second sourec of variation with high genetic diversity in Caatinga and Hurnid Tropics regions. and a third souree of variation with intermedian genetic diversity in Sub Tropies, Litoral. and Semi Arid regions. Divergence between the different geographie regions varied from 0.3% between Brazil and Cuba, but 0,6% between Brazil and Malaysia, Accessions from Cuba are more close to accessions from Colombia theu the other countries. The highest divergence between populations is observed between Wide Oceurrence population in Brazil and lhe population from Malaysia, and between Litoral and Malaysia, This indicates that lhe germplasm in Malaysia shows substantial differences from the one in Brazil, and may be provenance from different region in South America. ] Financia' SllQport· CNPg Tbe RockefelJer Foundation. G.55 G.57 257 CASSA VA (Manihotesculenta CRANTZ) PHENETIC RELA T10NSHIPS ANO GENETIC DIVERSITY REVEALEO BY .~IORPHOLOGICAL DESCRJPTORS ANO RAPO MARKERS.I Luiz J.C. ~ . Carvalhoê, Barbara A. Sehaal3*. Wania M.G. Fukuda 4, ENARGEN/EMBRAPA Brasilia-OF. Department of Biology - Washington . niversity St Louis-MO, USA. CNPMf/EMI:!RAPA. Cruz das Almas-Ba. ! Morphologieal descriptors and Random Amplified Polymorphie ONA (RAPO) marker were used to assess the genetic variability of cassava (Manihot esculenta Crantz). Ninety four cassava aceessions, three majo morphological descriptors (determined by PCA) and 96 polymorphic bands were analyzed by the mean of phenetic relationship. Cluster groups generated with Jaccard sirnilarity index by UPMGA method were further analyzed by the eonsensus tree method to assess the distinctness of the clusters identified by UPGMA-derived phenogram. Genetic diversity o ,the morphological groups was assessed by the meaning of the estimated value of nucleotide diversity. The grouping pattem implied by lhe phenogram generated with UPGMA method showed different degree o resolution (truly bifurcated phenogram), different levels of tree imbalanee, Fd no group eorrespondence between the two markers. A eonsensus fork indcx (CIe) value of 0.41 and 0.22 as well as the Mickevich's index (CIm) values of 0.03 and 0.01 were observed for morphological and RAPO markers respectively. Morphological deseriptors revealed 22 distinet clusters of accessions with high resolution, while lhe RAPO markers revealed 18 distinct c1usters with low resolution and high group imbalance. None of the cultivars c1ustered by one kind of marker was clustered the same way by the other marker. The eorrelation between lhe c1uster groups obtained by the two markers was very low (I'='Ü.077) and not statistically significant. The genetic diversity among accessions in lhe morphological distinct clusters revealed by nucleotide diversity showed a nucleotide variation per site varying from 0.326 to 2.779-percent. These results indicate that RAPO marker provides means for discriminating genetic.variation in cassava germplasm, specially when used in eoncert with morphólogical diagnoses. ] Financial sJlnoorl' CNpa Ibe RockefeIJer Foundatjcm ' PIIF-NETIC RELATIONSIIIPS ANO GENEfIC DIVERSITY AMONG GEOGRAPHIC LANORACES OF CASSA VA (Manihot escúlenta CRANT"L) REVEALED I:!Y PCR-HASED ASSAYSI. LuizJ.C.I:!. Carvalhoê, Barbara A. Schaal3*, Wania M.G. fukuda4. CENARGENI EMBRAPA Brasilia-OF. Department of Biology - Washington Urtiversity St Louis-MO, USA. CNPMF/EMHRAPA, Cruz das A1mas-Ba. Two PCR-based molecular genetic markers were used to examine lhe distribution of genetic variation among cassava accessions representing seven geographical regions in Brazil. RAPO assay, and Microsatellite- primed PCR assay, together with phenetie anaIysis and nucleotide diversitey and divergence were used to understand the genetie structure of the geograpbic representative accessions and to assess genetie diversity within and between the aecessions from geographic regions sampled, The levei of band polymorphism among cassava accessioos varies wilh the kind of marker, being high in RAPO than in microsatellite-primed PCR. The distinctness of clusters identified by UPGMA-derived phenogràm was higher or the microsatellite-primed PCR Ihan for RAPO analysis as iodicated by the matrix eorrelation and eonsensus tree analysis. This observation was efleeted on the grouping paliem diff erentiation obtained by the two Imarkers. The RAPO polymorphism showed resolution to form distinct tgroups of individuais for accessioos from Cerrados (CE) and Caatinga (CA). but not from other regions. While the microsatellite-primed PCR formed distinct groups of individuais for accessions from Hurnid Tropics (HT), Sub Tropics (ST), Cerrados (CE), Semi Arid (SA) and Littorai (LI). The polymorphism of bolh techniques did not show resolution to resolve individuais for geographic regions from Wide Occurrence, Overall, the nucleotide diversity (pi values) were 0.3% higher in RAPO markers than in microsatellite-primed PCR. This indicate that the two markers hits different regions in the genome of cassava. IFinancial support: CNP<j, TheRockefeller Foundation. G.56 G.58

G.55 G - ainfo.cnptia.embrapa.brainfo.cnptia.embrapa.br/digital/bitstream/item/48336/1/Uso-marcadores-2.pdfAlmas-Ba. Geographie population structure of cassava gennplasm eolleetion

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USO OE_ MARCAOORES M~LECULARES (RAPO) PARAAVAlIAÇAO DE PUREZA GENETICA EM MILHO (Zea mays l.).César Cruz de Carvalho', Claudinei Andreoli2, Sidney NettoParentoni2, Maurício A. Lopes2, L.R. Goulart' e Edilson Paiva21 Curso de Pós Graduação em Genética e Bioquímica. DEGEB-UFU .Universidade Federal de Uberlândia - Uberlândia MG2 EMBRAPAI CNPMS ' .Núcleo de Biologia Aplicada. Sete Lagoas, MG.

A produção de sementes de milho híbrido (Zea mays L.) requera remoção completa de pendões do parental fêmea antes dapolinização. O despendoamento incompleto deste parentalproduz "selfs" e "sibs" que na próxima geração resultam emplantas menos vigorosas e de baixa produtividade, diminuindo osg.anhos genéticos. Este estudo objetivou avaliar o potencial datécnica de reação em cadeia da polimerase com "primers"aleatórios (RAPO) para determinação de pureza genética em~llho. Os materiais genéticos utilizados foram os híbridos simplesfemea (HS 200) e macho (HS-201 M) parentais do híbrido duploBR-201. Foram empregados seis tratamentos que consistiam emdiferentes niveis de contaminação (O, 1, 3, 5, 8 e 10%) doparental fêmea HS 200. O ONA utilizado para amplificação porRAPO, foi obtido de folhas de um conjunto de 100 plântulas decada tratamento. Foram testados 480 "primers" (OPERON,Alameda. CAl· De todos 0$ "primers" utilizados somente o CCC-33 originou uma banda de aproximadamente 1.584 pb queapresentou variação de intensidade em relação ao nível decontaminação. Esta banda permitiu detectar com clareza níveisde contaminação acima de 10%.

Suporte Financeiro: EMBRAPNCNPMS

GENETIC DIVERSITY OF CASSAVA (MANIHOT ESCULENTACRANTZ) IN A GERMPLASM COLLECfIO]'J ASSESSED BY RAPOASSA Y I. Luiz J,c.I:!. Carvalhoz, I:!arbara A Sehaal3*, Wania M.A.Fukuda 4. CENARGEN/EMBRAPA Brasilia-OF. Department of Biology -Washington University St Louis-MO, USA CNPMF/EMBRAPA, Cruz dasAlmas-Ba. Geographie population structure of cassava gennplasm eolleetionwas assessed by RAPO markers. Fifty nine eassava accessions represetingthe World Core Colleetion and seven geographic regions in one of the centerof diversity of eassava were used. Phenetie analysis discriminated ninedistinct clusters, two c1usters from Colombia, two c1usters from Brazil andfive clusters of distinct regions in Brazil. None of the other representativeindividuais from the other countries showed distinet clusters. Thispopulation structurc represents the genetie diversity of cassava germplasmin the World Core Colleetion, and confirms lhe high genetic diversity indifferent regions in Brazil. lt is a1so inferred that accessions originated fromCerrados. Litoral, and Sub Tropics are well represented in the World CoreCollection, but not the other regions. Oegree 01' genetic diversity withinindividuais indicated higher values for nucleotide diversity (2.7%) in theBrazilian collection than in the World Core Collection (2,1 %). From thegeographic regioos of Brazil, it is possible to distinguish three major sourceof genetic diversity. One region, the Cerrados arca, with lirnited diversity(0.6% of nucleotidc diversity per site in the genome), a second sourec ofvariation with high genetic diversity in Caatinga and Hurnid Tropics regions.and a third souree of variation with intermedian genetic diversity in SubTropies, Litoral. and Semi Arid regions. Divergence between the differentgeographie regions varied from 0.3% between Brazil and Cuba, but 0,6%between Brazil and Malaysia, Accessions from Cuba are more close toaccessions from Colombia theu the other countries. The highest divergencebetween populations is observed between Wide Oceurrence population inBrazil and lhe population from Malaysia, and between Litoral and Malaysia,This indicates that lhe germplasm in Malaysia shows substantial differencesfrom the one in Brazil, and may be provenance from different region inSouth America.] Financia' SllQport· CNPg Tbe RockefelJer Foundation.

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CASSA VA (Manihotesculenta CRANTZ) PHENETICRELA T10NSHIPS ANO GENETIC DIVERSITY REVEALEO BY.~IORPHOLOGICAL DESCRJPTORS ANO RAPO MARKERS.I Luiz J.C.

~

. Carvalhoê, Barbara A. Sehaal3*. Wania M.G. Fukuda 4,ENARGEN/EMBRAPA Brasilia-OF. Department of Biology - Washington

. niversity St Louis-MO, USA. CNPMf/EMI:!RAPA. Cruz das Almas-Ba.!Morphologieal descriptors and Random Amplified Polymorphie ONA(RAPO) marker were used to assess the genetic variability of cassava(Manihot esculenta Crantz). Ninety four cassava aceessions, three majomorphological descriptors (determined by PCA) and 96 polymorphic bandswere analyzed by the mean of phenetic relationship. Cluster groupsgenerated with Jaccard sirnilarity index by UPMGA method were furtheranalyzed by the eonsensus tree method to assess the distinctness of theclusters identified by UPGMA-derived phenogram. Genetic diversity o, the morphological groups was assessed by the meaning of the estimatedvalue of nucleotide diversity. The grouping pattem implied by lhephenogram generated with UPGMA method showed different degree oresolution (truly bifurcated phenogram), different levels of tree imbalanee,Fd no group eorrespondence between the two markers. A eonsensus forkindcx (CIe) value of 0.41 and 0.22 as well as the Mickevich's index (CIm)values of 0.03 and 0.01 were observed for morphological and RAPO markersrespectively. Morphological deseriptors revealed 22 distinet clusters ofaccessions with high resolution, while lhe RAPO markers revealed 18distinct c1usters with low resolution and high group imbalance. None ofthe cultivars c1ustered by one kind of marker was clustered the same way bythe other marker. The eorrelation between lhe c1uster groups obtained bythe two markers was very low (I'='Ü.077) and not statistically significant.The genetic diversity among accessions in lhe morphological distinct clustersrevealed by nucleotide diversity showed a nucleotide variation per sitevarying from 0.326 to 2.779-percent. These results indicate that RAPOmarker provides means for discriminating genetic.variation in cassavagermplasm, specially when used in eoncert with morphólogical diagnoses.

] Financial sJlnoorl' CNpa Ibe RockefeIJer Foundatjcm '

PIIF-NETIC RELATIONSIIIPS ANO GENEfIC DIVERSITY AMONGGEOGRAPHIC LANORACES OF CASSA VA (Manihot escúlentaCRANT"L) REVEALED I:!Y PCR-HASED ASSAYSI. LuizJ.C.I:!.Carvalhoê, Barbara A. Schaal3*, Wania M.G. fukuda4. CENARGENIEMBRAPA Brasilia-OF. Department of Biology - Washington UrtiversitySt Louis-MO, USA. CNPMF/EMHRAPA, Cruz das A1mas-Ba.

Two PCR-based molecular genetic markers were used to examine lhedistribution of genetic variation among cassava accessions representingseven geographical regions in Brazil. RAPO assay, and Microsatellite-primed PCR assay, together with phenetie anaIysis and nucleotide diversiteyand divergence were used to understand the genetie structure of thegeograpbic representative accessions and to assess genetie diversity withinand between the aecessions from geographic regions sampled, The levei ofband polymorphism among cassava accessioos varies wilh the kind ofmarker, being high in RAPO than in microsatellite-primed PCR. Thedistinctness of clusters identified by UPGMA-derived phenogràm was higheror the microsatellite-primed PCR Ihan for RAPO analysis as iodicatedby the matrix eorrelation and eonsensus tree analysis. This observation wasefleeted on the grouping paliem diff erentiation obtained by the twoImarkers. The RAPO polymorphism showed resolution to form distincttgroups of individuais for accessioos from Cerrados (CE) and Caatinga(CA). but not from other regions. While the microsatellite-primed PCRformed distinct groups of individuais for accessions from Hurnid Tropics(HT), Sub Tropics (ST), Cerrados (CE), Semi Arid (SA) and Littorai (LI).The polymorphism of bolh techniques did not show resolution to resolveindividuais for geographic regions from Wide Occurrence, Overall, thenucleotide diversity (pi values) were 0.3% higher in RAPO markers than inmicrosatellite-primed PCR. This indicate that the two markers hits differentregions in the genome of cassava.

IFinancial support: CNP<j, TheRockefeller Foundation.

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