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FIG. 1 - MITweb.mit.edu/9.013/www/presentations/Nathan1.pdf · A More Rigorous Scale for Chilis. Control: is it specific for the function in question? • Controls Tested: – ATP,

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Page 1: FIG. 1 - MITweb.mit.edu/9.013/www/presentations/Nathan1.pdf · A More Rigorous Scale for Chilis. Control: is it specific for the function in question? • Controls Tested: – ATP,

FIG. 1

Page 2: FIG. 1 - MITweb.mit.edu/9.013/www/presentations/Nathan1.pdf · A More Rigorous Scale for Chilis. Control: is it specific for the function in question? • Controls Tested: – ATP,

What a Long, Strange TrpIt’s Been

9.013: Cell. and Mol. NeurobiologyNathan Wilson

February 9, 2004

Page 3: FIG. 1 - MITweb.mit.edu/9.013/www/presentations/Nathan1.pdf · A More Rigorous Scale for Chilis. Control: is it specific for the function in question? • Controls Tested: – ATP,
Page 4: FIG. 1 - MITweb.mit.edu/9.013/www/presentations/Nathan1.pdf · A More Rigorous Scale for Chilis. Control: is it specific for the function in question? • Controls Tested: – ATP,
Page 5: FIG. 1 - MITweb.mit.edu/9.013/www/presentations/Nathan1.pdf · A More Rigorous Scale for Chilis. Control: is it specific for the function in question? • Controls Tested: – ATP,

“Human Vision”Visible Light Illumination

“Honeybee Vision”Ultraviolet Illumination

Page 6: FIG. 1 - MITweb.mit.edu/9.013/www/presentations/Nathan1.pdf · A More Rigorous Scale for Chilis. Control: is it specific for the function in question? • Controls Tested: – ATP,
Page 7: FIG. 1 - MITweb.mit.edu/9.013/www/presentations/Nathan1.pdf · A More Rigorous Scale for Chilis. Control: is it specific for the function in question? • Controls Tested: – ATP,
Page 8: FIG. 1 - MITweb.mit.edu/9.013/www/presentations/Nathan1.pdf · A More Rigorous Scale for Chilis. Control: is it specific for the function in question? • Controls Tested: – ATP,
Page 9: FIG. 1 - MITweb.mit.edu/9.013/www/presentations/Nathan1.pdf · A More Rigorous Scale for Chilis. Control: is it specific for the function in question? • Controls Tested: – ATP,

darkhv

Based on Tsunoda, 1997

Rhodopsin activates G protein (Gqα) which activates PLC

PLC breaks down PIP2 IP3 & DAG which activate TRP which let in Ca++

Ca++ activates PKC which deactivates TRP channel

Page 10: FIG. 1 - MITweb.mit.edu/9.013/www/presentations/Nathan1.pdf · A More Rigorous Scale for Chilis. Control: is it specific for the function in question? • Controls Tested: – ATP,
Page 11: FIG. 1 - MITweb.mit.edu/9.013/www/presentations/Nathan1.pdf · A More Rigorous Scale for Chilis. Control: is it specific for the function in question? • Controls Tested: – ATP,
Page 12: FIG. 1 - MITweb.mit.edu/9.013/www/presentations/Nathan1.pdf · A More Rigorous Scale for Chilis. Control: is it specific for the function in question? • Controls Tested: – ATP,

Previously Known

• Locus of capsaicin sensitivity: Dorsal root ganglia

• Action of putative capsaicin receptor:trigger calcium influx into its cells.

Page 13: FIG. 1 - MITweb.mit.edu/9.013/www/presentations/Nathan1.pdf · A More Rigorous Scale for Chilis. Control: is it specific for the function in question? • Controls Tested: – ATP,

JABLONSKI DIAGRAM

Ground state

Excited electronicsinglet state

Singlet excitedstate

Excitation

Excited-State Lifetime(10-9-10-8 s)

FluorescenceEmissionStokes shift

hυEX - hυΕΜ

FLUORESCENCE QUANTUM YIELDFLUORESCENCE QUANTUM YIELD# fluorescence photons emitted (Stage 3)

# fluorescence photons absorbed (Stage 1)

Page 14: FIG. 1 - MITweb.mit.edu/9.013/www/presentations/Nathan1.pdf · A More Rigorous Scale for Chilis. Control: is it specific for the function in question? • Controls Tested: – ATP,
Page 15: FIG. 1 - MITweb.mit.edu/9.013/www/presentations/Nathan1.pdf · A More Rigorous Scale for Chilis. Control: is it specific for the function in question? • Controls Tested: – ATP,

Search for the Capsaicin Receptor:Expression Cloning

Page 16: FIG. 1 - MITweb.mit.edu/9.013/www/presentations/Nathan1.pdf · A More Rigorous Scale for Chilis. Control: is it specific for the function in question? • Controls Tested: – ATP,

Search for the Capsaicin Receptor:Expression Cloning

Page 17: FIG. 1 - MITweb.mit.edu/9.013/www/presentations/Nathan1.pdf · A More Rigorous Scale for Chilis. Control: is it specific for the function in question? • Controls Tested: – ATP,

Does it Work the Same?Previously Known

• Nature of receptor channel: Non-selective cation channel

• Agonists of receptor:include capsaicin and resiniferatoxin.

• Antagonists of receptor:include capsazepine and rubidium red.

Page 18: FIG. 1 - MITweb.mit.edu/9.013/www/presentations/Nathan1.pdf · A More Rigorous Scale for Chilis. Control: is it specific for the function in question? • Controls Tested: – ATP,

Does it work the same?Does expression of the isolated

protein confers capsaicin sensitivity?

(Oh et al., J. Neurosci., 1996)

Page 19: FIG. 1 - MITweb.mit.edu/9.013/www/presentations/Nathan1.pdf · A More Rigorous Scale for Chilis. Control: is it specific for the function in question? • Controls Tested: – ATP,

Does it work the same?Expression of the isolated protein

confers capsaicin sensitivity

Page 20: FIG. 1 - MITweb.mit.edu/9.013/www/presentations/Nathan1.pdf · A More Rigorous Scale for Chilis. Control: is it specific for the function in question? • Controls Tested: – ATP,

Does it work the same?Expression of the isolated protein

confers antagonist sensitivity

Page 21: FIG. 1 - MITweb.mit.edu/9.013/www/presentations/Nathan1.pdf · A More Rigorous Scale for Chilis. Control: is it specific for the function in question? • Controls Tested: – ATP,

Can VR1 confer that “je ne sais???” subtlety of chili experience?

Page 22: FIG. 1 - MITweb.mit.edu/9.013/www/presentations/Nathan1.pdf · A More Rigorous Scale for Chilis. Control: is it specific for the function in question? • Controls Tested: – ATP,
Page 23: FIG. 1 - MITweb.mit.edu/9.013/www/presentations/Nathan1.pdf · A More Rigorous Scale for Chilis. Control: is it specific for the function in question? • Controls Tested: – ATP,

A More Rigorous Scale for Chilis

Page 24: FIG. 1 - MITweb.mit.edu/9.013/www/presentations/Nathan1.pdf · A More Rigorous Scale for Chilis. Control: is it specific for the function in question? • Controls Tested: – ATP,

Control: is it specific for the function in question?

• Controls Tested:– ATP, serotonin, ACh, bradykinin, substance

P, histamine, glutamate, hypertonic solution

Page 25: FIG. 1 - MITweb.mit.edu/9.013/www/presentations/Nathan1.pdf · A More Rigorous Scale for Chilis. Control: is it specific for the function in question? • Controls Tested: – ATP,

“I-V Curve” for capsaicin currents during different holding voltages

Page 26: FIG. 1 - MITweb.mit.edu/9.013/www/presentations/Nathan1.pdf · A More Rigorous Scale for Chilis. Control: is it specific for the function in question? • Controls Tested: – ATP,

Which Ions Carry the Charge?

Page 27: FIG. 1 - MITweb.mit.edu/9.013/www/presentations/Nathan1.pdf · A More Rigorous Scale for Chilis. Control: is it specific for the function in question? • Controls Tested: – ATP,

Monitoring activity of single channels

Page 28: FIG. 1 - MITweb.mit.edu/9.013/www/presentations/Nathan1.pdf · A More Rigorous Scale for Chilis. Control: is it specific for the function in question? • Controls Tested: – ATP,

Capsaicin works on either side of the membrane

Page 29: FIG. 1 - MITweb.mit.edu/9.013/www/presentations/Nathan1.pdf · A More Rigorous Scale for Chilis. Control: is it specific for the function in question? • Controls Tested: – ATP,

The receptor, with capsaicin, is an effectively lethal accomplice

Page 30: FIG. 1 - MITweb.mit.edu/9.013/www/presentations/Nathan1.pdf · A More Rigorous Scale for Chilis. Control: is it specific for the function in question? • Controls Tested: – ATP,

The receptor, with capsaicin, is an effectively lethal accomplice

Page 31: FIG. 1 - MITweb.mit.edu/9.013/www/presentations/Nathan1.pdf · A More Rigorous Scale for Chilis. Control: is it specific for the function in question? • Controls Tested: – ATP,

Predicted Amino Acid Sequence

Page 32: FIG. 1 - MITweb.mit.edu/9.013/www/presentations/Nathan1.pdf · A More Rigorous Scale for Chilis. Control: is it specific for the function in question? • Controls Tested: – ATP,

Ankyrin repeats

Page 33: FIG. 1 - MITweb.mit.edu/9.013/www/presentations/Nathan1.pdf · A More Rigorous Scale for Chilis. Control: is it specific for the function in question? • Controls Tested: – ATP,

Predicted Structure

Page 34: FIG. 1 - MITweb.mit.edu/9.013/www/presentations/Nathan1.pdf · A More Rigorous Scale for Chilis. Control: is it specific for the function in question? • Controls Tested: – ATP,

Predicted transmembrane domains

Page 35: FIG. 1 - MITweb.mit.edu/9.013/www/presentations/Nathan1.pdf · A More Rigorous Scale for Chilis. Control: is it specific for the function in question? • Controls Tested: – ATP,

Predicted Structure

Page 36: FIG. 1 - MITweb.mit.edu/9.013/www/presentations/Nathan1.pdf · A More Rigorous Scale for Chilis. Control: is it specific for the function in question? • Controls Tested: – ATP,

Predicted pore loop region

Page 37: FIG. 1 - MITweb.mit.edu/9.013/www/presentations/Nathan1.pdf · A More Rigorous Scale for Chilis. Control: is it specific for the function in question? • Controls Tested: – ATP,

Predicted Structure

Page 38: FIG. 1 - MITweb.mit.edu/9.013/www/presentations/Nathan1.pdf · A More Rigorous Scale for Chilis. Control: is it specific for the function in question? • Controls Tested: – ATP,

Predicted PKA binding sites

Page 39: FIG. 1 - MITweb.mit.edu/9.013/www/presentations/Nathan1.pdf · A More Rigorous Scale for Chilis. Control: is it specific for the function in question? • Controls Tested: – ATP,

Predicted Structure

Page 40: FIG. 1 - MITweb.mit.edu/9.013/www/presentations/Nathan1.pdf · A More Rigorous Scale for Chilis. Control: is it specific for the function in question? • Controls Tested: – ATP,

VR1 Resembles Store-Operated Channels

Page 41: FIG. 1 - MITweb.mit.edu/9.013/www/presentations/Nathan1.pdf · A More Rigorous Scale for Chilis. Control: is it specific for the function in question? • Controls Tested: – ATP,
Page 42: FIG. 1 - MITweb.mit.edu/9.013/www/presentations/Nathan1.pdf · A More Rigorous Scale for Chilis. Control: is it specific for the function in question? • Controls Tested: – ATP,
Page 43: FIG. 1 - MITweb.mit.edu/9.013/www/presentations/Nathan1.pdf · A More Rigorous Scale for Chilis. Control: is it specific for the function in question? • Controls Tested: – ATP,

Heat also activates our putative receptor!

Page 44: FIG. 1 - MITweb.mit.edu/9.013/www/presentations/Nathan1.pdf · A More Rigorous Scale for Chilis. Control: is it specific for the function in question? • Controls Tested: – ATP,

Heat and capsaicin are interchangeable for activating the VR1 receptor

Page 45: FIG. 1 - MITweb.mit.edu/9.013/www/presentations/Nathan1.pdf · A More Rigorous Scale for Chilis. Control: is it specific for the function in question? • Controls Tested: – ATP,
Page 46: FIG. 1 - MITweb.mit.edu/9.013/www/presentations/Nathan1.pdf · A More Rigorous Scale for Chilis. Control: is it specific for the function in question? • Controls Tested: – ATP,
Page 47: FIG. 1 - MITweb.mit.edu/9.013/www/presentations/Nathan1.pdf · A More Rigorous Scale for Chilis. Control: is it specific for the function in question? • Controls Tested: – ATP,
Page 48: FIG. 1 - MITweb.mit.edu/9.013/www/presentations/Nathan1.pdf · A More Rigorous Scale for Chilis. Control: is it specific for the function in question? • Controls Tested: – ATP,
Page 49: FIG. 1 - MITweb.mit.edu/9.013/www/presentations/Nathan1.pdf · A More Rigorous Scale for Chilis. Control: is it specific for the function in question? • Controls Tested: – ATP,
Page 50: FIG. 1 - MITweb.mit.edu/9.013/www/presentations/Nathan1.pdf · A More Rigorous Scale for Chilis. Control: is it specific for the function in question? • Controls Tested: – ATP,

Trp => Mustard Oil, THC

Page 51: FIG. 1 - MITweb.mit.edu/9.013/www/presentations/Nathan1.pdf · A More Rigorous Scale for Chilis. Control: is it specific for the function in question? • Controls Tested: – ATP,
Page 52: FIG. 1 - MITweb.mit.edu/9.013/www/presentations/Nathan1.pdf · A More Rigorous Scale for Chilis. Control: is it specific for the function in question? • Controls Tested: – ATP,

1. Calcium Imaging / Functional Cloning

Page 53: FIG. 1 - MITweb.mit.edu/9.013/www/presentations/Nathan1.pdf · A More Rigorous Scale for Chilis. Control: is it specific for the function in question? • Controls Tested: – ATP,

2. Recapitulate electrophys. sensitivity

Page 54: FIG. 1 - MITweb.mit.edu/9.013/www/presentations/Nathan1.pdf · A More Rigorous Scale for Chilis. Control: is it specific for the function in question? • Controls Tested: – ATP,

3. Electrophys: Currents Same

Page 55: FIG. 1 - MITweb.mit.edu/9.013/www/presentations/Nathan1.pdf · A More Rigorous Scale for Chilis. Control: is it specific for the function in question? • Controls Tested: – ATP,
Page 56: FIG. 1 - MITweb.mit.edu/9.013/www/presentations/Nathan1.pdf · A More Rigorous Scale for Chilis. Control: is it specific for the function in question? • Controls Tested: – ATP,

Right Place, Makes Sense

Page 57: FIG. 1 - MITweb.mit.edu/9.013/www/presentations/Nathan1.pdf · A More Rigorous Scale for Chilis. Control: is it specific for the function in question? • Controls Tested: – ATP,
Page 58: FIG. 1 - MITweb.mit.edu/9.013/www/presentations/Nathan1.pdf · A More Rigorous Scale for Chilis. Control: is it specific for the function in question? • Controls Tested: – ATP,
Page 59: FIG. 1 - MITweb.mit.edu/9.013/www/presentations/Nathan1.pdf · A More Rigorous Scale for Chilis. Control: is it specific for the function in question? • Controls Tested: – ATP,