Supplementary table S1: Source of population data

Publication Ori

gin

al s

amp

le s

ize

DYS

19/D

YS39

4D

YS38

8D

YS38

9ID

YS38

9bD

YS39

0D

YS39

1D

YS39

2D

YS39

3/D

YS39

5D

YS42

6D

YS43

4D

YS43

5D

YS43

6D

YS43

7/D

YS45

7D

YS43

8D

YS43

9/G

ATA

-A4

DYS

441

D

YS44

2

DYS

443

D

YS44

4

DYS

445

D

YS44

6D

YS44

7D

YS44

8D

YS44

9D

YS45

0D

YS45

2

DYS

453

DYS

454

D

YS45

5D

YS45

6D

YS45

8D

YS46

0/G

ATA

-A7.

1D

YS46

1/G

ATA

-A7.

2D

YS46

2D

YS46

3D

YS47

2D

YS47

6D

YS48

0D

YS48

1D

YS48

5D

YS48

7D

YS48

8D

YS49

0D

YS49

1D

YS49

2D

YS49

4D

YS49

5D

YS49

7D

YS50

4D

YS50

5D

YS50

8D

YS51

0

DYS

511

DYS

513

D

YS52

0

DYS

522

D

YS52

5

DYS

530

DYS

531

DYS

532

DYS

533

DYS

534

DYS

537

DYS

540

DYS

544

D

YS54

9

DYS

552

D

YS55

4D

YS55

6

DYS

557

DYS

561

D

YS56

5D

YS56

7D

YS56

8D

YS56

9D

YS57

0

DYS

572

DYS

573

DYS

575

DYS

576

D

YS57

8

DYS

579

DYS

580

DYS

583

DYS

587

D

YS58

8D

YS58

9

DYS

590

DYS

593

D

YS59

4D

YS59

6D

YS60

7D

YS61

7 D

YS61

8D

YS62

2D

YS63

0D

YS63

4D

YS63

5/G

ATA

-C4

DYS

636

DYS

638

DYS

640

DYS

641

DY

S6

43

DYS

645

DYS

709/

DYS

516

GA

TA A

10G

ATA

H4

DYF

406S

1YP

ENTA

1YP

ENTA

2

Álvarez et al. (2002) 57 X X X X X X X X X

Alves et al. (2003) 112 X X X X X X X X X X X X X X X X

Alves et al. (2007) 250 X X X X X X X X X X X X X X X

Arroyo-Pardo et al. (2005) 101 X X X X X X X X X X X X X X X

Ayadi et al. (2006) 101 X X X X X X X X X X X

Baeza et al. (2007) 120 X X X X X X X X X X X X X

Ballard et al. (2006) 155 X X X X X X X X X X

Barać et al. (2003) 457 X X X X X X X X

Barrot et al. (2007) 190 X X X X X X X

Berger et al. (2003) 134 X X X X X X X

Berger et al. (2005) 130 X X X X X X X X X X X X X X X

Bianchi et al. (1998) 89 X X X X X X X

Bortolini et al. (2003) 231 X X X X X X

Bosch et al. (2003) 132 X X X X X X X X X X X X X X X X X

Bosch et al. 2000 184 X X X X X X X X

Brandt-Casadevall et al. (2003) 100 X X X X X X X X X

Builes et al. (2007) 173 X X X X X X X X X X X X X X X

Butler et al. (2006) & Schoske et al. (2004) 657 X X X X X X X X X X X X X X X X X X X X X X X X X X X X X X X X X X X X X X X

Caglià et al. (2003) 112 X X X X X X X

Çakır et al. (2004) 113 X X X X X X X X X

Carvalho et al. (2003) 270 X X X X X X X

Chang et al. (2007) 980 X X X X X X X X X X X X X X X

Cherni et al. 2005 247 X X X X X X X X X X

Coia et al. (2004) 46 X X X X X X

Dai et al. (2004) 103 X X X X X X X X X

Decker et al. (2008) 389 X X X X X X X X X X X X X X X

Derenko et al. (2007) 236 X X X X X X X X X X

Destro-Bisol et al. (2004) 125 X X X X X X

Forster et al. (1998) 32 X X X X X

Frigi et al. (2006) 66 X X X X X X X X X X X X X X X

Fujihara et al. (2009) 156 X X X X X

García et al. (2004) 167 X X X X X X X X X

Hallenberg et al. (2005) 201 X X X X X X X X X X

Hashiyada et al. (2008) 1166 X X X X X X X X X X X X X X X

Hu (2006) 120 X X X X X X X X X X

Huang et al. (2008) 200 X X X X X X X X X X X X X X X

Hwang et al. (2007) 569 X X X X X X X X X X

Iida et al. (2002) 190 X X X X X X

Järve et al. 2009 148 X X X X X X X X X X X X X X X X X X X X X

Kayser et al. (2001) 986 X X X X X X X

Khodjet el Khil et al. (2005) 135 X X X X X X

Kim et al. (2008) 526 X X X X X X X X X X X X X X X

Kim et al. (2009) 539 X X X X X X

Kumagai et al. (2007) 252 X X X X X X X X X X X

Leat et al. (2007) 88 X X X X X X X X X

Lecerf et al. (2007) 165 X X X X X X X

Lee et al. (2003) 300 X X X X X X

Lee et al. (2007) 355 X X X X X X X X X X X X X X X X X X X

Lessig et al. (2006) 152 X X X X X X X

Li et al. (2007) 107 X X X X X X X X X X X X X X X

Lim et al. (2007) 74 X X X X X X X X X X X X X X X X X X X X X X X X X X X X X X X X X X X X X X X X X X X X X X X X X X

López et al. (2004) 133 X X X X X X X X X X X X X X X

De Maesschalck et al. (2005) 113 X X X X X X X X X X

Martín et al. (2004) 148 X X X X X X X X X X X X X X X

Mizuno et al. (2008) 1079 X X X X X X X X X X X X X X X

Nasidze et al. (2003) 668 X X X X X X X

Ogata et al. (2005) 340 X X X X X

Páez-Riberos et al. (2006) 88 X X X X X X

Park et al. (2005) 301 X X X X X X X X X X X X X X X X

Pereira (2002) 66 X X X X X X X

Pereira et al. (2007) 500 X X X X X X X X X X X X X X X

Pérez-Lezaun et al. (1999) 172 X X X X X X X

Pokupčić et al. (2008) 146 X X X X X X X X X X X X X X X

Pontes et al. (2007) 175 X X X X X X X X X X X X X X X

Quintana-Murci et al. (2004) 108 X X X X X X X X X X

Quintans et al. (2003) 212 X X X X X X X X

Rodig et al. (2008) 391 X X X X X X X X X X X X X X X X X X X X X X X X X X X X X X X X X

Romero et al. (2008) 305 X X X X X X X X X X X X X X X

Rosa et al. (2007) 225 X X X X X X X X X X X

Sánchez et al. (2007) 247 X X X X X X X X X X X X X X X

Shen and Li (2005) 105 X X X X X X

Shepherd et al. (2004) 149 X X X X X

Shi et al. (2007) 158 X X X X X X X X X X X X X X X X X X X X

Shi et al. (2009) 216 X X X X X X X X X X X X X X X X X X X X X

Soltyszewski et al. (2007) 255 X X X X X X X X X X X X X X X

Souto et al. (2006) 138 X X X X X X X X X X

de Souza Góes et al. (2005) 126 X X X X X X X X X X X X X X X

Tang et al. 2003 108 X X X X X X X

Thangaraj et al. (2003) 37 X X X X X

Trovoada et al. (2001) 104 X X X X X X X

Turrina et al. (2006) 155 X X X X X X X X X X X X X X X

Vandenberg et al. (1999) 79 X X X X

Veselinovic et al. (2008) 185 X X X X X X X X X X X X X X X

Vidal-Martinez et al. (2003) 225 X X X X X X X

Woźniak et al. (2006) 215 X X X X X X X X X X

Xin et al. (2008) 138 X X X X X X X X X X

Zhang and Lee (2007) 355 X X X X X X X X

Zhang et al. (2006) 122 X X X X X X X X X X X X X X X X X X

Zhang et al. (2008) 237 X X X X X X X X X X

Zhang et al. (2009) 560 X X X X X X

Zhu et al. (2005) 96 X X X X X X X X X

Zhu et al. (2008) 167 X X X X X X X X X X X X X X X

Effective sample size 1853

619

3918

020

1744

718

607

1860

718

189

1848

869

413

1411

6311

4113

854

1445

714

617

1163

1163

1307

2079

1163

2337

1489

8798

1680

585

477

108

103

108

9178

8602

1860

1670

237

1045

74 74 74 681

1117

74 72 74 74 74 74 1118

74 216

1329

1881

103

74 103

916

2213

460

74 612

867

1647

650

74 1288

103

1003

103

74 1673

811

103

74 72 74 74 2112

74 74 74 2433

460

74 74 74 103

216

459

74 103

875

148

216

463

74 158

158

216

9440

73 74 74 74 2019

148

158

1675

9524

463

148

148

REFERENCES FOR SUPPLEMENTARY TABLE S1

Álvarez, S., Mesa, M.S., López, A.M., de las Heras, J., de Lago, E., López, M.T., Rubio, J.M., Arroyo-Pardo, E., 2002. STR data for nine Y-chromosomal loci in Guinea Equatorial (Central Africa). Forensic Sci. Int. 127, 142–144.

Alves, C., Gomes, V., Prata, M.J., Amorim, A., Gusmão, L., 2007. Population data for Y-chromosome haplotypes defined by 17 STRs (AmpFlSTR YFiler) in Portugal. Forensic Sci. Int. 171, 250–255.

Alves, C., Gusmão, L., Barbosa, J., Amorim, A., 2003. Evaluating the informative power of Y-STRs: a comparative study using European and new African haplotype data. Forensic Sci. Int. 134, 126–133.

Arroyo-Pardo, E., Gusmão, L., López-Parra, A.M., Baeza, C., Mesa, M.S., Amorim, A., 2005. Genetic variability of 16 Y-chromosome STRs in a sample from Equatorial Guinea (Central Africa). Forensic Sci. Int. 149, 109–113.

Ayadi, I., Ammar-Keskes, L., Rebai, A., 2006. Haplotypes for 13 Y-chromosomal STR loci in South Tunisian population (Sfax region). Forensic Sci. Int. 164, 249–253.

Baeza, C., Guzmán, R., Tirado, M., López-Parra, A.M., Rodríguez, T., Mesa, M.S., Fernández, E., Arroyo-Pardo, E., 2007. Population data for 15 Y-chromosome STRs in a population sample from Quito (Ecuador). Forensic Sci. Int. 173, 214–219.

Ballard, D.J., Phillips, C., Thacker, C.R., Syndercombe Court, D., 2006. Y chromosome STR haplotype data for an Irish population. Forensic Sci. Int. 161, 64–68.

Barać, L., Peričić, M., Martinović Klarić, I., Janićijević, B., Parik, J., Rootsi, S., Rudan, P., 2003. Y chromosome STRs in Croatians. Forensic Sci. Int. 138, 127–133.

Barrot, C., Simili, C., Sánchez, C., Brandt-Casadevall, C., González-Martín, A., Xifró, A., Ortega, M., Huguet, E., Corbella, J., Gené, M., 2007. Haplotype frequencies of eight Y-chromosome short tandem repeats loci in four Amerindian populations (State of Hidalgo, Mexico). Journal of Forensic Sciences 52, 504–506.

Berger, B., Lindinger, A., Niederstätter, H., Grubwieser, P., Parson, W., 2005. Y-STR typing of an Austrian population sample using a 17-loci multiplex PCR assay. Int. J. Legal Med. 119, 241–246.

Berger, B., Niederstätter, H., Brandstätter, A., Parson, W., 2003. Molecular characterization and Austrian Caucasian population data of the multi-copy Y-chromosomal STR DYS464. Forensic Sci. Int. 137, 221–230.

Bianchi, N.O., Catanesi, C.I., Bailliet, G., Martinez-Marignac, V.L., Bravi, C.M., Vidal-Rioja, L.B., Herrera, R.J., López-Camelo, J.S., 1998. Characterization of ancestral and derived Y-chromosome haplotypes of New World native populations. Am. J. Hum. Genet. 63, 1862–1871.

Bortolini, M., Salzano, F.M., Thomas, M.G., Stuart, S., Nasanen, S.P., Bau, C.H., Hutz, M.H., Layrisse, Z., Petzl-Erler, M.L., Tsuneto, L.T., Hill, K., Hurtado, A.M., Castro-de-Guerra, D., Torres, M.M., Groot, H., Michalski, R., Nymadawa, P., Bedoya, G., Bradman, N., Labuda, D., Ruiz-Linares, A., 2003. Y-chromosome evidence for differing ancient demographic histories in the Americas. The American Journal of Human Genetics 73, 524–539.

Bosch, E., Calafell, F., Pérez-Lezaun, A., Comas, D., Izaabel, H., Akhayat, O., Sefiani, A., Hariti, G., Dugoujon, J.M., Bertranpetit, J., 2000. Y chromosome STR haplotypes in four populations from northwest Africa. Int. J. Legal Med. 114, 36–40.

Bosch, E., Rosser, Z.H., Nørby, S., Lynnerup, N., Jobling, M.A., 2003. Y-chromosomal STR haplotypes in Inuit and Danish population samples. Forensic Sci. Int. 132, 228–232.

Brandt-Casadevall, C., Ben Dhiab, M., Taroni, F., Castella, V., Dimo-Simonin, N., Zemni, M., Mangin, P., 2003. Tunisian population data on 10 Y-chromosomal loci. Forensic Sci. Int. 135, 247–250.

Builes, J.J., Marténez, B., Gómez, A., Caraballo, L., Espinal, C., Aguirre, D., Montoya, A., Moreno, M., Amorim, A., Gusmão, L., Bravo, M.L., 2007. Y chromosome STR haplotypes in the Caribbean city of Cartagena (Colombia). Forensic Sci. Int. 167, 62–69.

Butler, J.M., Decker, A.E., Vallone, P.M., Kline, M.C., 2006. Allele frequencies for 27 Y-STR loci with U.S. Caucasian, African American, and Hispanic samples. Forensic Sci. Int. 156, 250–260.

Caglià, A., Tofanelli, S., Coia, V., Boschi, I., Pescarmona, M., Spedini, G., Pascali, V., Paoli, G., Destro-Bisol, G., 2003. A study of Y-chromosome microsatellite variation in Sub-Saharan Africa: a comparison between Fst and Rst genetic distances. Hum. Biol. 75, 313–330.

Çakır, A.H., Çelebioğlu, A., Yardımcı, E., 2004. Y-STR haplotypes in Central Anatolia region of Turkey. Forensic Sci. Int. 144, 59–64.

Carvalho, M., Anjos, M.A., Andrade, L., Lopes, V., Santos, M.V., Gamero, J., Corte Real, F., Vide, M.A., 2003. Y-chromosome STR haplotypes in two population samples: Azores Islands and Central Portugal. Forensic Sci. Int. 134, 29–35.

Chang, Y.M., Perumal, R., Keat, P.Y., Kuehn, D.L.C., 2007. Haplotype diversity of 16 Y-chromosomal STRs in three main ethnic populations (Malays, Chinese and Indians) in Malaysia. Forensic Sci. Int. 167, 70–76.

Cherni, L., Pereira, L., Goios, A., Loueslati, B.Y., Khil, H.K.E., Gomes, I., Gusmão, L., Alves, C., Slama, A., Amorim, A., Elgaaied, A.B., 2005. Y-chromosomal STR haplotypes in three ethnic groups and one cosmopolitan population from Tunisia. Forensic Sci. Int. 152, 95–99.

Coia, V., Caglià, A., Arredi, B., Donati, F., Santos, F.R., Pandya, A., Taglioli, L., Paoli, G., Pascali, V., Destro-Bisol, G., Tyler-Smith, C., 2004. Binary and microsatellite polymorphisms of the Y-chromosome in the Mbenzele pygmies from the Central African Republic. Am. J. Hum. Biol. 16, 57–67.

Dai, H.L., Wang, X.D., Li, Y.B., Wu, J., Zhang, J., Zhang, H.J., Dong, J.G., Hou, Y.P., 2004. Characterization and haplotype analysis of 10 novel Y-STR loci in Chinese Han population. Forensic Sci. Int. 145, 47–55.

De Maesschalck, K., Vanhoutte, E., Knaepen, K., Vanderheyden, N., Cassiman, J., Decorte, R., 2005. Y-chromosomal STR haplotypes in a Belgian population sample and identification of a micro-variant with a flanking site mutation at DYS19. Forensic Sci. Int. 152, 89–94.

Decker, A.E., Kline, M.C., Redman, J.W., Reid, T.M., Butler, J.M., 2008. Analysis of mutations in father–son pairs with 17 Y-STR loci. Forensic Sci. Int.: Genet. 2, e31–e35.

Derenko, M., Malyarchuk, B., Denisova, G., Wozniak, M., Grzybowski, T., Dambueva, I., Zakharov, I., 2007. Y-chromosome haplogroup N dispersals from south Siberia to Europe. J. Hum. Genet. 52, 763–770.

Destro-Bisol, G., Donati, F., Coia, V., Boschi, I., Verginelli, F., Caglià, A., Tofanelli, S., Spedini, G., Capelli, C., 2004. Variation of female and male lineages in Sub-Saharan populations: the importance of sociocultural factors. Mol. Biol. Evol. 21, 1673–1682.

Forster, P., Kayser, M., Meyer, E., Roewer, L., Pfeiffer, H., Benkmann, H., Brinkmann, B., 1998. Phylogenetic resolution of complex mutational features at Y-STR DYS390 in aboriginal Australians and Papuans. Mol. Biol. Evol. 15, 1108–1114.

Frigi, S., Pereira, F., Pereira, L., Yacoubi, B., Gusmão, L., Alves, C., Khodjet el Khil, H., Cherni, L., Amorim, A., Gaaied, A.E., 2006. Data for Y-chromosome haplotypes defined by 17 STRs (AmpFLSTR® Yfiler™) in two Tunisian Berber communities. Forensic Science International 160, 80–83.

Fujihara, J., Takeshita, H., Tsubota, E., Iida, R., 2009. Allele frequencies and haplotypes for five Y-STRs (DYS441, DYS442, DYS443, DYS444, and DYS445) in Ovambo and Turks populations using multiplex PCR system. Forensic Science International: Genetics 3, 268–269.

García, O., Martín, P., Gusmão, L., Albarrán, C., Alonso, S., de la Rua, C., Flores, C., Izagirre, N., Peñas, R., Pérez, J.A., Uriarte, I., Yurrebaso, I., Alonso, A., 2004. A Basque Country autochthonous population study of 11 Y-chromosome STR loci. Forensic Science International 145, 65–68.

Hallenberg, C., Simonsen, B., Sanchez, J., Morling, N., 2005. Y-chromosome STR haplotypes in Somalis. Forensic Science International 151, 317–321.

Hashiyada, M., Umetsu, K., Yuasa, I., Tamura, A., Matsusue, A., Suzuki, K., Kashimura, S., Funayama, M., 2008. Population genetics of 17 Y-chromosomal STR loci in Japanese. Forensic Science International: Genetics 2, e69–e70.

Hu, S.P., 2006. Polymorphism of Y-chromosomal STR haplotypes in the Chaoshan Han Chinese in South China. Forensic Sci. Int. 158, 80–85.

Huang, T., Hsu, Y., Li, J., Chung, J., Shun, C., 2008. Polymorphism of 17 Y-STR loci in Taiwan population. Forensic Science International 174, 249–254.

Hwang, J.H., Lee, H., Lee, Y.A., Han, M.S., Kim, W., Jin, I., Cho, N.S., 2007. Haplotypes for 12 Y-chromosomal STR loci in a Korean population (the central region). Forensic Science International 168, 73–84.

Iida, R., Tsubota, E., Sawazaki, K., Masuyama, M., Matsuki, T., Yasuda, T., Kishi, K., 2002. Characterization and haplotype analysis of the polymorphic Y-STRs DYS443, DYS444 and DYS445 in a Japanese population. International Journal of Legal Medicine 116, 191–194.

Järve, M., Zhivotovsky, L.A., Rootsi, S., Help, H., Rogaev, E.I., Khusnutdinova, E.K., Kivisild, T., Sanchez, J.J., 2009. Decreased Rate of Evolution in Y Chromosome STR Loci of Increased Size of the Repeat Unit. PLoS ONE 4, e7276.

Kayser, M., Krawczak, M., Excoffier, L., Dieltjes, P., Corach, D., Pascali, V., Gehrig, C., Bernini, L.F., Jespersen, J., Bakker, E., Roewer, L., Knijff, P.D., 2001. An extensive analysis of Y-chromosomal microsatellite haplotypes in globally dispersed human populations. Am. J. Hum. Genet. 68, 990–1018.

Khodjet el Khil, H., Marrakchi, R.T., Loueslati, B.Y., Langaney, A., Fellous, M., BenAmmar Elgaaied, A., 2005. Distribution of Y chromosome lineages in Jerba island population. Forensic Science International 148, 211–218.

Kim, S.H., Kim, N.Y., Hong, S.B., Cho, N.S., Kim, J.J., Han, M.S., Kim, W., 2008. Genetic polymorphisms of 16 Y chromosomal STR loci in Korean population. Forensic Science International: Genetics 2, e9–e10.

Kim, S.H., Kim, N.Y., Kim, K.S., Kim, J.J., Park, J.T., Chung, K.W., Han, M.S., Kim, W., 2009. Population genetics and mutational events at 6 Y-STRs in Korean population. Forensic Science International: Genetics 3, e53–e54.

Kumagai, R., Kumagai, A., Saigusa, K., Aoki, Y., 2007. Haplotype analysis of 17 Y-STR loci in a Japanese population. Forensic Sci. Int. 172, 72–78.

Leat, N., Ehrenreich, L., Benjeddou, M., Cloete, K., Davison, S., 2007. Properties of novel and widely studied Y-STR loci in three South African populations. Forensic Sci. Int. 168, 154–161.

Lecerf, M., Filali, M., Grésenguet, G., Ndjoyi-Mbiguino, A., Le Goff, J., de Mazancourt, P., Bélec, L., 2007. Allele frequencies and haplotypes of eight Y-short tandem repeats in Bantu population living in Central Africa. Forensic Science International 171, 212–215.

Lee, H.Y., Oh, J., Han, G., Shin, K., 2003. Allele frequencies and haplotypes of six new Y-specific STR loci in Koreans. Forensic Science International 136, 89–91.

Lee, H.Y., Park, M.J., Chung, U., Lee, H.Y., Yang, W.I., Cho, S., Shin, K., 2007. Haplotypes and mutation analysis of 22 Y-chromosomal STRs in Korean father―son pairs. Int. J. Legal Med. 121, 128–135.

Lessig, R., Edelmann, J., Kleemann, W.J., Kozhemyako, V., 2006. Population data of Y-chromosomal STRs in Russian males of the Primorye region population. Forensic Science International 159, 71–76.

Li, K.L., Kai, L., Yuming, M., 2007. Y chromosome STR haplotypes of Tibetan living Tibet Lassa. Forensic Science International 172, 79–83.

Lim, S., Xue, Y., Parkin, E., Tyler-Smith, C., 2007. Variation of 52 new Y-STR loci in the Y Chromosome Consortium worldwide panel of 76 diverse individuals. Int. J. Legal Med. 121, 124–127.

López, A.M., Álvarez, S., Gusmão, L., Alves, C., Mesa, M.S., Albentosa, A., Arribas, G., López , R., Barrio, P.A., Amorim, A., Arroyo-Pardo, E., 2004. Population data for 16 Y-chromosome STRs in four populations from Pyrenees (Spain). Forensic Science International 140, 125–129.

Martín, P., García-Hirschfeld, J., García, O., Gusmão, L., García, P., Albarrán, C., Sancho, M., Alonso, A., 2004. A Spanish population study of 17 Y-chromosome STR loci. Forensic Science International 139, 231–235.

Mizuno, N., Nakahara, H., Sekiguchi, K., Yoshida, K., Nakano, M., Kasai, K., 2008. 16 Y chromosomal STR haplotypes in Japanese. Forensic Science International 174, 71–76.

Nasidze, I., Schädlich, H., Stoneking, M., 2003. Haplotypes from the Caucasus, Turkey and Iran for nine Y-STR loci. Forensic Science International 137, 85–93.

Ogata, Y., Yamaba, T., Sawazaki, K., Iida, R., Tsubota, E., Takatsuka, H., Matsuki, T., Yasuda, T., Kishi, K., 2005. Improvement of a multiplex PCR system for DYS441, DYS442, DYS443, DYS444 and DYS445, and a population study in 340 Japanese males. Legal Medicine 7, 183–189.

Páez-Riberos, L.A., Muñoz-Valle, J.F., Figuera, L.E., Nuño-Arana, I., Sandoval-Ramírez, L., González-Martín, A., Ibarra, B., Rangel-Villalobos, H., 2006. Y-linked haplotypes in Amerindian chromosomes from Mexican populations: Genetic evidence to the dual origin of the Huichol tribe. Legal Medicine 8, 220–225.

Park, M.J., Lee, H.Y., Yoo, J., Chung, U., Lee, S.Y., Shin, K., 2005. Forensic evaluation and haplotypes of 19 Y-chromosomal STR loci in Koreans. Forensic Science International 152, 133–147.

Pereira, L., Gusmão, L., Alves, C., Amorim, A., Prata, M.J., 2002. Bantu and European Y-lineages in Sub-Saharan Africa. Annals of Human Genetics 66, 369–378.

Pereira, R.W., Monteiro, E.H.G., Hirschfeld, G.C.R., Wang, A.Y., Grattapaglia, D., 2007. Haplotype diversity of 17 Y-chromosome STRs in Brazilians. Forensic Science International 171, 226–236.

Pérez-Lezaun, A., Calafell, F., Comas, D., Mateu, E., Bosch, E., Martínez-Arias, R., Clarimón, J., Fiori, G., Luiselli, D., Facchini, F., Pettener, D., Bertranpetit, J., 1999. Sex-specific migration patterns in Central Asian populations, revealed by analysis of Y-chromosome short tandem repeats and mtDNA. American Journal Human Genetics 65, 208–219.

Pokupčić, K., Cukrov, S., Klarić, I.M., Salihović, M.P., Lauc, L.B., Blažanović, A., Janićijević, B., 2008. Y-STR genetic diversity of Croatian (Bayash) Roma. Forensic Sci. Int.: Genet. 2, e11–e13.

Pontes, M.L., Caine, L., Abrantes, D., Lima, G., Pinheiro, M.F., 2007. Allele frequencies and population data for 17 Y-STR loci (AmpFℓSTR® Y-filer™) in a Northern Portuguese population sample. Forensic Sci. Int. 170, 62–67.

Quintana-Murci, L., Bigham, A., Rouba, H., Barakat, A., McElreavey, K., Hammer, M., 2004. Y-chromosomal STR haplotypes in Berber and Arabic-speaking populations from Morocco. Forensic Sci. Int. 140, 113–115.

Quintans, B., Beleza, S., Brion, M., Sanchez-Diz, P., Lareu, M., Carracedo, A., 2003. Population data of Galicia (NW Spain) on the new Y-STRs DYS437, DYS438, DYS439, GATA A10, GATA A7.1, GATA A7.2, GATA C4 and GATA H4. Forensic Sci. Int. 131, 220–224.

Rodig, H., Roewer, L., Gross, A., Richter, T., de Knijff, P., Kayser, M., Brabetz, W., 2008. Evaluation of haplotype discrimination capacity of 35 Y-chromosomal short tandem repeat loci. Forensic Science International 174, 182–188.

Romero, R.E., Briceño, I., Lizarazo, R.D.P., Willuweit, S., Roewer, L., Gómez, A., 2008. A Colombian Caribbean population study of 16 Y-chromosome STR loci. Forensic Science International: Genetics 2, e5–e8.

Rosa, A., Ornelas, C., Jobling, M., Brehm, A., Villems, R., 2007. Y-chromosomal diversity in the population of Guinea-Bissau: a multiethnic perspective. BMC Evolutionary Biology 7, 124.

Sánchez, C., Barrot, C., Xifró, A., Ortega, M., Gómez de Aranda, I., Huguet, E., Corbella, J., Gené, M., 2007. Haplotype frequencies of 16 Y-chromosome STR loci in the Barcelona metropolitan area population using Y-Filer™ kit. Forensic Science International 172, 211–217.

Schoske, R., Vallone, P.M., Kline, M.C., Redman, J.W., Butler, J.M., 2004. High-throughput Y-STR typing of U.S. populations with 27 regions of the Y chromosome using two multiplex PCR assays. Forensic Sci. Int. 139, 107-121.

Shen, C., Li, S., 2005. Seven new Y-STRs haplotypes of Chinese Han ethnic group. Forensic Science International 154, 81–84.

Shepherd, C., Harbison, S., Vintiner, J., 2004. Y STR haplotype data for New Zealand population groups using the Y-Plex™ 6 kit. Forensic Science International 145, 69–72.

Shi, M., Tang, J., Bai, R., Yu, X., Lv, J., Hu, B., 2007. Haplotypes of 20 Y-chromosomal STRs in a population sample from southeast China (Chaoshan area). Int. J. Legal Med. 121, 455-462.

Shi, M., Bai, R., Yu, X., Lv, J., Hu, B., 2009. Haplotype diversity of 22 Y-chromosomal STRs in a southeast China population sample (Chaoshan area). Forensic Science International: Genetics 3, e45–e47.

Soltyszewski, I., Pepinski, W., Spolnicka, M., Kartasinska, E., Konarzewska, M., Janica, J., 2007. Y-chromosomal haplotypes for the AmpFlSTR Yfiler PCR Amplification Kit in a population sample from Central Poland. Forensic Science International 168, 61–67.

Souto, L., Gusmão, L., Ferreira, E., Amorim, A., Côrte-Real, F., Vieira, D., 2006. Y-chromosome STR haplotypes in East Timor: Forensic evaluation and population data. Forensic Science International 156, 261–265.

de Souza Góes, A.C., de Carvalho, E.F., Gomes, I., da Silva, D.A., Gil, É.H.F., Amorim, A., Gusmão, L., 2005. Population and mutation analysis of 17 Y-STR loci from Rio de Janeiro (Brazil). Int. J. Legal Med. 119, 70–76.

Tang, J., Hou, Y., Li, Y., Wu, J., Zhang, J., Zhang, H., 2003. Characterization of eight Y-STR loci and haplotypes in a Chinese Han population. Int. J. Legal Med. 117, 263-270.

Thangaraj, K., Singh, L., Reddy, A.G., Rao, V.R., Sehgal, S.C., Underhill, P.A., Pierson, M., Frame, I.G., Hagelberg, E., 2003. Genetic Affinities of the Andaman Islanders, a Vanishing Human Population. Current Biology 13, 86–93.

Trovoada, M.J., Alves, C., Gusmão, L., Amorim, A., Prata, M.J., 2001. Evidence for population sub-structuring in São Tomé e Príncipe as inferred from Y-chromosome STR analysis. Annals of Human Genetics 65, 271–283.

Turrina, S., Atzei, R., De Leo, D., 2006. Y-chromosomal STR haplotypes in a Northeast Italian population sample using 17plex loci PCR assay. International Journal of Legal Medicine 120, 56–59.

Vandenberg, N., van Oorschot, R.A., Tyler-Smith, C., Mitchell, R.J., 1999. Y-chromosome-specific microsatellite variation in Australian aboriginals. Human Biology 71, 915–931.

Veselinovic, I.S., Zgonjanin, D.M., Maletin, M.P., Stojkovic, O., Djurendic-Brenesel, M., Vukovic, R.M., Tasic, M.M., 2008. Allele frequencies and population data for 17 Y-chromosome STR loci in a Serbian population sample from Vojvodina province. Forensic Science International 176, 23–28.

Vidal-Martinez, J., Benítez-Páez, A., Reyes, H.O., 2003. Population data of new Y-chromosome STRs GATA C4, DYS438, DYS437, GATA A7.2, GATA H4, DYS439 and GATA A10 in males from Colombia. Forensic Science International 135, 243–246.

Woźniak, M., Derenko, M., Malyarchuk, B., Dambueva, I., Grzybowski, T., Miścicka-Śliwka, D., 2006. Allelic and haplotypic frequencies at 11 Y-STR loci in Buryats from South-East Siberia. Forensic Science International 164, 271–275.

Xin, N., Chen, T., Yu, B., Li, S., 2008. 12 Y-STRs haplotypes in Chinese Naxi ethnic minority group. Forensic Science International 174, 244–248.

Zhang, D., Zhang, D., Wu, W., Luo, H., Ye, Y., Feng, Y., Hou$, Y., 2009. Haplotypes of six miniY-STR loci in the Han population from Sichuan province and the Zhuang population in Guangxi Zhuang autonomous region. Forensic Science International: Genetics 3, e49–e51.

Zhang, H., Yun, L., Li, Y., Zhang, J., Wu, J., Yan, J., Hou, Y., 2008. Haplotype of 12 Y-STR loci of the PowerPlex Y-system in Sichuan Han ethnic group in west China. Forensic Science International 175, 244–249.

Zhang, Y., Cui, H., Cui, Y., Lin, H., Kim, K., Lee, J., 2006. Y chromosomal STR haplotypes in the northeastern China Han population. Forensic Science International 156, 82–87.

Zhang, Y., Lee, J., 2007. Genetic polymorphism of Y-chromosomal STR loci in South Korean population. Forensic Science International 173, 225–230.

Zhu, B., Li, X., Wang, Z., Wu, H., He, Y., Zhao, J., Liu, Y., 2005. Y-STRs haplotypes of Chinese Mongol ethnic group using Y-PLEX™ 12. Forensic Science International 153, 260–263.

Zhu, B., Wu, Y., Shen, C., Yang, T., Deng, Y., Xun, X., Tian, Y., Yan, J., Li, T., 2008. Genetic analysis of 17 Y-chromosomal STRs haplotypes of Chinese Tibetan ethnic group residing in Qinghai province of China. Forensic Science International 175, 238–243.

Supplementary table S2: Source of meiosis data

Publication DY

S1

9/D

YS

39

4

DY

S3

88

DY

S3

89

I

DY

S3

89

b

DY

S3

90

DY

S3

91

DY

S3

92

DY

S3

93

/DY

S3

95

DY

S4

35

DY

S4

37

DY

S4

38

DY

S4

39

/GA

TA

-A4

DY

S4

43

DY

S4

44

DY

S4

46

DY

S4

47

DY

S4

48

DY

S4

49

DY

S4

56

DY

S4

58

DY

S4

60

/GA

TA

-A7

.1

DY

S4

61

/GA

TA

-A7

.2

DY

S6

35

/GA

TA

-C4

GA

TA

A1

0

GA

TA

H4

DY

S4

72

DY

S4

76

DY

S4

80

DY

S4

81

DY

S4

85

DY

S4

87

DY

S4

88

DY

S4

90

DY

S4

91

DY

S4

92

DY

S4

94

DY

S4

95

DY

S4

97

DY

S5

05

DY

S5

08

DY

S5

11

DY

S5

20

DY

S5

22

DY

S5

25

DY

S5

30

DY

S5

31

DY

S5

33

DY

S5

37

DY

S5

40

DY

S5

49

DY

S5

54

DY

S5

56

DY

S5

57

DY

S5

65

DY

S5

67

DY

S5

68

DY

S5

69

DY

S5

70

DY

S5

72

DY

S5

73

DY

S5

75

DY

S5

76

DY

S5

78

DY

S5

79

DY

S5

80

DY

S5

83

DY

S5

89

DY

S5

90

DY

S5

94

DY

S6

17

DY

S6

18

DY

S6

22

DY

S6

30

DY

S6

36

DY

S6

38

DY

S6

40

DY

S6

41

DY

S6

43

DY

S7

09

/DY

S5

16

Ballard et al. (2005) x x x x x x x x x x x x

Berger et al. (2005) x x x x x x x x x x x x x x x

Bianchi et al. (1998)* x x x x x x x

Decker et al. (2008) x x x x x x x x x x x x x x x

Domingues et al. (2007) x x x x x x x x x x

Dupuy et al. (2001) x x x x x x x x

Dupuy et al. (2004) x x x x x x x x

Ge et al. (2009) x x x x x x x x x x x x x x x

Goedbloed et al. (2009) x x x x x x x x x x x x x x x

Gusmão et al. (2005) x x x x x x x x x x x x x x x

Heyer et al. (1997) x x x x x

Hohoff et al. (2007) x x x x x x x x x x

Kayser et al. (2000) x x x x x x x

Kim et al. (2009) x x x x x x

Kurihara et al. (2004) x x x x x x x x x x x x x

Lee et al. (2007) x x x x x x x x x x x x x x x x x x x

Lessig & Edelmann (1998) x x x x

Mulero et al. (2006) x x x x x x x x x x x x x x x

Padilla-Gutiérrez et al. (2008) x x x x x x x x x

Pestoni et al. (1998) x x x x x

Pontes et al. (2007) x x x x x x x x x x x x x x x

Sánchez-Diz et al. (2008) x x x x x x x x x x x x x x

Shi et al. (2007) x x x x x x x x x x x x x x x x x x x

de Souza Góes et al. (2005) x x x x x x x x x x x x x x x

Tamura et al. (2008) x x x x x x x x x x x x x x x

Toscanini et al. (2008) x x x x x x x x x x x x x x x

Tsai et al. (2002) x x x x x x x x

Turrina et al. (2006) x x x x x x x x x x x x x x x

Vermeulen et al. (2009) x x x x x x x x x x x x x x x x x x x x x x x x x x x x x x x x x x x x x x x x x x x x x x x x x

* as specified at the Y Chromosome Haplotype Reference Database (www.yhrd.org)

REFERENCES FOR SUPPLEMENTARY TABLE S2

Ballard, D.J., Phillips, C., Wright, G., Thacker, C.R., Robson, C., Revoir, A.P., Syndercombe Court, D., 2005. A study of mutation rates and the characterisation of intermediate, null and duplicated alleles for 13 Y chromosome STRs. Forensic Sci. Int. 155, 65–70.

Berger, B., Lindinger, A., Niederstätter, H., Grubwieser, P., Parson, W., 2005. Y-STR typing of an Austrian population sample using a 17-loci multiplex PCR assay. Int. J. Legal Med. 119, 241–246.

Bianchi, N.O., Catanesi, C.I., Bailliet, G., Martinez-Marignac, V.L., Bravi, C.M., Vidal-Rioja, L.B., Herrera, R.J., López-Camelo, J.S., 1998. Characterization of ancestral and derived Y-chromosome haplotypes of New World native populations. Am. J. Hum. Genet. 63, 1862–1871.

Decker, A.E., Kline, M.C., Redman, J.W., Reid, T.M., Butler, J.M., 2008. Analysis of mutations in father–son pairs with 17 Y-STR loci. Forensic Sci. Int.: Genet. 2, e31–e35.

Domingues, P.M., Gusmão, L., da Silva, D.A., Amorim, A., Pereira, R.W., de Carvalho, E.F., 2007. Sub-Saharan Africa descendents in Rio de Janeiro (Brazil): population and mutational data for 12 Y-STR loci. Int. J. Legal Med. 121, 238–241.

Dupuy, B.M., Andreassen, R., Flones, A.G., Tomassen, K., Egeland, T., Brion, M., Carracedo, A., Olaisen, B., 2001. Y-chromosome variation in a Norwegian population sample. Forensic Sci. Int. 117, 163–173.

Dupuy, B.M., Stenersen, M., Egeland, T., Olaisen, B., 2004. Y-chromosomal microsatellite mutation rates: differences in mutation rate between and within loci. Hum. Mutat. 23, 117–124.

Ge, J., Budowle, B., Aranda, X.G., Planz, J.V., Eisenberg, A.J., Chakraborty, R., 2009. Mutation rates at Y chromosome short tandem repeats in Texas populations. Forensic Sci. Int.: Genet. 3, 179–184.

Goedbloed, M., Vermeulen, M., Fang, R., Lembring, M., Wollstein, A., Ballantyne, K., Lao, O., Brauer, S., Krüger, C., Roewer, L., Lessig, R., Ploski, R., Dobosz, T., Henke, L., Henke, J., Furtado, M., Kayser, M., 2009. Comprehensive mutation analysis of 17 Y-chromosomal short tandem repeat polymorphisms included in the AmpFlSTR® Yfiler® PCR amplification kit. Int. J. Legal Med. 123, 471-482.

Gusmão, L., Sánchez-Diz, P., Calafell, F., Martín, P., Alonso, C.A., Álvarez-Fernández, F., Alves, C., Borjas-Fajardo, L., Bozzo, W.R., Bravo, M.L., Builes, J.J., Capilla, J., Carvalho, M., Castillo, C., Catanesi, C.I., Corach, D., Lonardo, A.M.D., Espinheira, R., de Carvalho, E.F., Farfán, M.J., Figueiredo, H.P., Gomes, I., Lojo, M.M., Marino, M., Pinheiro, M.F., Pontes, M.L., Prieto, V., Ramos-Luis, E., Riancho, J.A., Góes, A.C.S., Santapa, O.A., Sumita, D.R., Vallejo, G., Rioja, L.V., Vide, M.C., da Silva, C.I.V., Whittle, M.R., Zabala, W., Zarrabeitia, M.T., Alonso, A., Carracedo, A., Amorim, A., 2005. Mutation rates at Y chromosome specific microsatellites. Hum. Mutat. 26, 520–528.

Heyer, E., Puymirat, J., Dieltjes, P., Bakker, E., de Knijff, P., 1997. Estimating Y chromosome specific microsatellite mutation frequencies using deep rooting pedigrees. Hum. Mol. Genet. 6, 799–803.

Hohoff, C., Dewa, K., Sibbing, U., Hoppe, K., Forster, P., Brinkmann, B., 2007. Y-chromosomal microsatellite mutation rates in a population sample from northwestern Germany. International Journal of Legal Medicine 121, 359–363.

Kayser, M., Caglià, A., Corach, D., Fretwell, N., Gehrig, C., Graziosi, G., Heidorn, F., Herrmann, S., Herzog, B., Hidding, M., Honda, K., Jobling, M., Krawczak, M., Leim, K., Meuser, S., Meyer, E., Oesterreich, W., Pandya, A., Parson, W., Penacino, G., Perez-Lezaun, A., Piccinini, A., Prinz, M., Schmitt, C., Schneider, P.M., Szibor, R., Teifel-Greding, J., Weichhold, G., de Knijff, P., Roewer, L.,

1997. Evaluation of Y-chromosomal STRs: a multicenter study. International Journal of Legal Medicine 110, 125–133.

Kayser, M., Roewer, L., Hedman, M., Henke, L., Henke, J., Brauer, S., Krüger, C., Krawczak, M., Nagy, M., Dobosz, T., Szibor, R., de Knijff, P., Stoneking, M., Sajantila, A., 2000. Characteristics and frequency of germline mutations at microsatellite loci from the human Y chromosome, as revealed by direct observation in father/son pairs. American Journal of Human Genetics 66, 1580–1588.

Kim, S.H., Kim, N.Y., Kim, K.S., Kim, J.J., Park, J.T., Chung, K.W., Han, M.S., Kim, W., 2009. Population genetics and mutational events at 6 Y-STRs in Korean population. Forensic Science International: Genetics 3, e53–e54.

Kurihara, R., Yamamoto, T., Uchihi, R., Li, S., Yoshimoto, T., Ohtaki, H., Kamiyama, K., Katsumata, Y., 2004. Mutations in 14 Y-STR loci among Japanese father-son haplotypes. International Journal of Legal Medicine 118, 125–131.

Lee, H.Y., Park, M.J., Chung, U., Lee, H.Y., Yang, W.I., Cho, S., Shin, K., 2007. Haplotypes and mutation analysis of 22 Y-chromosomal STRs in Korean father―son pairs. Int. J. Legal Med. 121, 128–135.

Lessig, R., Edelmann, J., 1998. Y chromosome polymorphisms and haplotypes in West Saxony (Germany). Int. J. Legal Med. 111, 215–218.

Mulero, J.J., Chang, C.W., Calandro, L.M., Green, R.L., Li, Y., Johnson, C.L., Hennessy, L.K., 2006. Development and Validation of the AmpFℓSTR® Yfiler™ PCR Amplification Kit: A Male Specific, Single Amplification 17 Y-STR Multiplex System. J. For. Sci. 51, 64–75.

Pestoni, C., Cal, M.L., Lareu, M.V., Rodríguez-Calvo, M.S., Carracedo, A., 1998. Y chromosome STR haplotypes: genetic and sequencing data of the Galician population (NW Spain). International Journal of Legal Medicine 112, 15–21.

Pontes, M.L., Caine, L., Abrantes, D., Lima, G., Pinheiro, M.F., 2007. Allele frequencies and population data for 17 Y-STR loci (AmpFℓSTR® Y-filer™) in a Northern Portuguese population sample. Forensic Sci. Int. 170, 62–67.

Sánchez-Diz, P., Alves, C., Carvalho, E., Carvalho, M., Espinheira, R., García, O., Pinheiro, M., Pontes, L., Porto, M., Santapa, O., Silva, C., Sumita, D., Valente, S., Whittle, M., Yurrebaso, I., Carracedo, A., Amorim, A., Gusmão, L., 2008. Population and segregation data on 17 Y-STRs: results of a GEP-ISFG collaborative study. International Journal of Legal Medicine 122, 529–533.

Shi, M., Tang, J., Bai, R., Yu, X., Lv, J., Hu, B., 2007. Haplotypes of 20 Y-chromosomal STRs in a population sample from southeast China (Chaoshan area). Int. J. Legal Med. 121, 455-462.

de Souza Góes, A.C., de Carvalho, E.F., Gomes, I., da Silva, D.A., Gil, É.H.F., Amorim, A., Gusmão, L., 2005. Population and mutation analysis of 17 Y-STR loci from Rio de Janeiro (Brazil). Int. J. Legal Med. 119, 70–76.

Tamura, A., Iwata, M., Tsuboi, K., Miyazaki, T., Nishio, H., Suzuki, K., 2008. Sequence analysis of two de novo mutation alleles at the Y-STR locus. Forensic Science International: Genetics Supplement Series 1, 250–251.

Toscanini, U., Gusmão, L., Berardi, G., Amorim, A., Carracedo, Á., Salas, A., Raimondi, E., 2008. Y chromosome microsatellite genetic variation in two Native American populations from Argentina: Population stratification and mutation data. Forensic Science International: Genetics 2, 274–280.

Tsai, L., Yuen, T., Hsieh, H., Lin, M., Tzeng, C., Huang, N., Linacre, A., Lee, J.C., 2002. Haplotype frequencies of nine Y-chromosome STR loci in the Taiwanese Han population. International Journal of Legal Medicine 116, 179–183.

Turrina, S., Atzei, R., De Leo, D., 2006. Y-chromosomal STR haplotypes in a Northeast Italian population sample using 17plex loci PCR assay. International Journal of Legal Medicine 120, 56–59.

Vermeulen, M., Wollstein, A., van der Gaag, K., Lao, O., Xue, Y., Wang, Q., Roewer, L., Knoblauch, H., Tyler-Smith, C., de Knijff, P., Kayser, M., 2009. Improving global and regional resolution of male lineage differentiation by simple single-copy Y-chromosomal short tandem repeat polymorphisms. Forensic Sci. Int.: Genet. 3, 205–213.