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Cryogenic Optical Microscope Faculty Advisor: Prof. Greg Kowalski Sponsors: Dale Larson , James Hogle, Ph.D. (Harvard Medical School) Design Team : Mohammad Ali John Delcore Sarah Kaufmann David Rezac

Cryogenic Optical Microscope Faculty Advisor: Prof. Greg Kowalski Sponsors: Dale Larson, James Hogle, Ph.D. (Harvard Medical School) Design Team: Mohammad

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Page 1: Cryogenic Optical Microscope Faculty Advisor: Prof. Greg Kowalski Sponsors: Dale Larson, James Hogle, Ph.D. (Harvard Medical School) Design Team: Mohammad

Cryogenic Optical Microscope

Faculty Advisor: Prof. Greg Kowalski

Sponsors: Dale Larson , James Hogle, Ph.D. (Harvard Medical School)

Design Team:

Mohammad AliJohn DelcoreSarah KaufmannDavid Rezac

Page 2: Cryogenic Optical Microscope Faculty Advisor: Prof. Greg Kowalski Sponsors: Dale Larson, James Hogle, Ph.D. (Harvard Medical School) Design Team: Mohammad

Problem Statement• Infected, frozen sample to be

analyzed in TEM

Very high resolution

Required to better understand cell behavior

• Imaging complications

Small field of view leads to lots of time searching

Electron bombardment

Congested area around cell

(Source: www.brockhouse.mcmaster.ca)

Page 3: Cryogenic Optical Microscope Faculty Advisor: Prof. Greg Kowalski Sponsors: Dale Larson, James Hogle, Ph.D. (Harvard Medical School) Design Team: Mohammad

Problem Statement• Infected, frozen sample to be

analyzed in TEM

Very high resolution

Required to better understand cell behavior

• Imaging complications

Small field of view leads to lots of time searching

Electron bombardment

Congested area around cell`

(Source: www.lifesci.ucsb.edu)

Page 4: Cryogenic Optical Microscope Faculty Advisor: Prof. Greg Kowalski Sponsors: Dale Larson, James Hogle, Ph.D. (Harvard Medical School) Design Team: Mohammad

• It is necessary to first image the sample in an optical microscope (OM) and identify areas of interest

• Currently, frozen samples cannot be viewed in the OM

Problem Statement (cont.)

(Source: webphysics.davidson.edu)

Page 5: Cryogenic Optical Microscope Faculty Advisor: Prof. Greg Kowalski Sponsors: Dale Larson, James Hogle, Ph.D. (Harvard Medical School) Design Team: Mohammad

• Maintain specimen below -140°C

• Provide means to image the sample (microscope)

• Isolate sample from significant vibrations

• Protect sample grid from stresses that may cause deformation

• Prevent contamination by water contact (condensation)

Design Requirements

Page 6: Cryogenic Optical Microscope Faculty Advisor: Prof. Greg Kowalski Sponsors: Dale Larson, James Hogle, Ph.D. (Harvard Medical School) Design Team: Mohammad

• Aid research and development for improved therapeutic advancements

• Improve quality and quantity of TEM images

• Enable microscopists Label molecular components in OM Analyze with high resolution of TEM

• Requires no additional expertise Familiar operations for microscopists

Impact Statement

Page 7: Cryogenic Optical Microscope Faculty Advisor: Prof. Greg Kowalski Sponsors: Dale Larson, James Hogle, Ph.D. (Harvard Medical School) Design Team: Mohammad

• The sample is embedded in vitreous ice Stable below -140oC

• Vitreous ice is the “glassy” amorphous solid form of water Does not scatter electrons Low vapor pressure

Why below -140oC?

(Source: www.nims.go.jp)

Page 8: Cryogenic Optical Microscope Faculty Advisor: Prof. Greg Kowalski Sponsors: Dale Larson, James Hogle, Ph.D. (Harvard Medical School) Design Team: Mohammad

• Numerical Aperture (NA)

Indicates the resolving power of the lens Larger NA = better resolution Inversely related: WD NA

Optical Microscope

(Source: www.microscopyu.com)

Page 9: Cryogenic Optical Microscope Faculty Advisor: Prof. Greg Kowalski Sponsors: Dale Larson, James Hogle, Ph.D. (Harvard Medical School) Design Team: Mohammad

• Numerical Aperture (NA)

Indicates the resolving power of the lens Larger NA = better resolution Inversely related: WD NA

Optical Microscope

(Source: www.microscopyu.com)

Page 10: Cryogenic Optical Microscope Faculty Advisor: Prof. Greg Kowalski Sponsors: Dale Larson, James Hogle, Ph.D. (Harvard Medical School) Design Team: Mohammad

Design #1

Preliminary Designs

Design #2

Design #3

Page 11: Cryogenic Optical Microscope Faculty Advisor: Prof. Greg Kowalski Sponsors: Dale Larson, James Hogle, Ph.D. (Harvard Medical School) Design Team: Mohammad

Thermal Modeling

Design #3

TGU=16oC

Page 12: Cryogenic Optical Microscope Faculty Advisor: Prof. Greg Kowalski Sponsors: Dale Larson, James Hogle, Ph.D. (Harvard Medical School) Design Team: Mohammad

• Able to function at LN2 temperature

• Manufactured by Microthek Corp. in Germany

• 80x magnification

• 0.8 Numerical Aperture

• .96 mm working distance

• Withstands cyclic testing to liquid helium temperatures

Cold Temperature Objective Lens

Page 13: Cryogenic Optical Microscope Faculty Advisor: Prof. Greg Kowalski Sponsors: Dale Larson, James Hogle, Ph.D. (Harvard Medical School) Design Team: Mohammad

Design Evolution

Cold LensPosition

Vacuum Chamber

Inner Skirt to Hold N2 Gas

Post to Hold Samplefor Imaging

Outer Housing

Window(Image Path)

LN2 Level

Page 14: Cryogenic Optical Microscope Faculty Advisor: Prof. Greg Kowalski Sponsors: Dale Larson, James Hogle, Ph.D. (Harvard Medical School) Design Team: Mohammad

• Cold Finger

• LN2 Workstation

TEM Cryo-Transfer Apparatus

Page 15: Cryogenic Optical Microscope Faculty Advisor: Prof. Greg Kowalski Sponsors: Dale Larson, James Hogle, Ph.D. (Harvard Medical School) Design Team: Mohammad

Current Design

Cold Finger

Upper Assembly(Contains Objective Lens)

Work Station

Page 16: Cryogenic Optical Microscope Faculty Advisor: Prof. Greg Kowalski Sponsors: Dale Larson, James Hogle, Ph.D. (Harvard Medical School) Design Team: Mohammad

Current Design

Page 17: Cryogenic Optical Microscope Faculty Advisor: Prof. Greg Kowalski Sponsors: Dale Larson, James Hogle, Ph.D. (Harvard Medical School) Design Team: Mohammad

Current Design

Page 18: Cryogenic Optical Microscope Faculty Advisor: Prof. Greg Kowalski Sponsors: Dale Larson, James Hogle, Ph.D. (Harvard Medical School) Design Team: Mohammad

Current Design

LN2 Reservoir

Page 19: Cryogenic Optical Microscope Faculty Advisor: Prof. Greg Kowalski Sponsors: Dale Larson, James Hogle, Ph.D. (Harvard Medical School) Design Team: Mohammad

Current Design

SamplePosition

Page 20: Cryogenic Optical Microscope Faculty Advisor: Prof. Greg Kowalski Sponsors: Dale Larson, James Hogle, Ph.D. (Harvard Medical School) Design Team: Mohammad

Prototype

Page 21: Cryogenic Optical Microscope Faculty Advisor: Prof. Greg Kowalski Sponsors: Dale Larson, James Hogle, Ph.D. (Harvard Medical School) Design Team: Mohammad

External Optical Microscope

Page 22: Cryogenic Optical Microscope Faculty Advisor: Prof. Greg Kowalski Sponsors: Dale Larson, James Hogle, Ph.D. (Harvard Medical School) Design Team: Mohammad

BoilingCHF

(Source: www.alamthermal.com)

(Source: www.nuc.berkeley.edu)(Source: www.spaceflight.esa.int)

Page 23: Cryogenic Optical Microscope Faculty Advisor: Prof. Greg Kowalski Sponsors: Dale Larson, James Hogle, Ph.D. (Harvard Medical School) Design Team: Mohammad

Boiling

•qin=9.47W•SS in 116 minutes•1.98kg LN2

•qin=3.08W•SS in 26 minutes•0.075kg LN2

Page 24: Cryogenic Optical Microscope Faculty Advisor: Prof. Greg Kowalski Sponsors: Dale Larson, James Hogle, Ph.D. (Harvard Medical School) Design Team: Mohammad

Boiling

•qin=9.47W•SS in 116 minutes•1.98kg LN2

•qin=3.08W•SS in 26 minutes•0.075kg LN2

Page 25: Cryogenic Optical Microscope Faculty Advisor: Prof. Greg Kowalski Sponsors: Dale Larson, James Hogle, Ph.D. (Harvard Medical School) Design Team: Mohammad

Testing

Thermocouples inKey Locations

Complete Assembly in Imaging Position

External NitrogenFlush

Page 26: Cryogenic Optical Microscope Faculty Advisor: Prof. Greg Kowalski Sponsors: Dale Larson, James Hogle, Ph.D. (Harvard Medical School) Design Team: Mohammad

Testing

Test #1

Test #4Test #3

Test #2

Pre-CooledCopper

=Tsample

Page 27: Cryogenic Optical Microscope Faculty Advisor: Prof. Greg Kowalski Sponsors: Dale Larson, James Hogle, Ph.D. (Harvard Medical School) Design Team: Mohammad

Testing

Test #1

Test #4Test #3

Test #2

Pre-CooledCopper

=Tsample

Page 28: Cryogenic Optical Microscope Faculty Advisor: Prof. Greg Kowalski Sponsors: Dale Larson, James Hogle, Ph.D. (Harvard Medical School) Design Team: Mohammad

-200

-180

-160

-140

-120

-100

-80

-60

-40

-20

0

0 5 10 15 20 25 30 35

Time (min)

Tem

per

atu

re (

C)

Testing

Test 1

Test 2

Test 3

Test 4

ImagingCutoff

Page 29: Cryogenic Optical Microscope Faculty Advisor: Prof. Greg Kowalski Sponsors: Dale Larson, James Hogle, Ph.D. (Harvard Medical School) Design Team: Mohammad

Microscope

Focused: 2.7µPartial FocusAberrations

Resolution Target

10µ Line Spacing

(filters omitted)

Special Thanks to:Antoine van Oijen

Page 30: Cryogenic Optical Microscope Faculty Advisor: Prof. Greg Kowalski Sponsors: Dale Larson, James Hogle, Ph.D. (Harvard Medical School) Design Team: Mohammad

Current Prototype

• Allows for imaging in the optical microscope Stable cold environment maintains specimen below -140°C for

10-15 minutes

• Provides imaging resolution down to 2.7µ

• Incorporates TEM cold finger into the design Protects sample from additional stresses or possible water

contamination Saves time and effort

• Whole system is on a 1,000 lb optical table Reduces vibrations

Page 31: Cryogenic Optical Microscope Faculty Advisor: Prof. Greg Kowalski Sponsors: Dale Larson, James Hogle, Ph.D. (Harvard Medical School) Design Team: Mohammad

• Continue design stage with thermal mass concept

• Refine microscope operation

• Reduce footprint and isolate optical components

• Function specific improvements:

Automate XY and Z stages Purchase camera suited to application

Recommendations

Page 32: Cryogenic Optical Microscope Faculty Advisor: Prof. Greg Kowalski Sponsors: Dale Larson, James Hogle, Ph.D. (Harvard Medical School) Design Team: Mohammad

Questions?