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Copyright © 2003 Pearson Education, Inc. publishing as Benjamin Cummings
Carbon and organic molecules
• Carbon and its bonds
• Polymers and monomers
- Carbohydrates
- Proteins
- Lipids
- Nucleic acids
Copyright © 2003 Pearson Education, Inc. publishing as Benjamin Cummings
• A carbon atom forms four covalent bonds
• C can make chains or rings
Why is carbon so important to molecules of life?
Figure 3.1, top part
Structuralformula
Ball-and-stickmodel
Space-fillingmodel
Methane
The 4 single bonds of carbon point to the corners of a tetrahedron.
Copyright © 2003 Pearson Education, Inc. publishing as Benjamin Cummings
• Methane, CH4
Figure 2.8Bx
Arrangement of atoms determines molecular shape.Shape determines function of molecules
Copyright © 2003 Pearson Education, Inc. publishing as Benjamin Cummings
• Butane, ball and stick model
Figure 3.1x3
Copyright © 2003 Pearson Education, Inc. publishing as Benjamin Cummings
• Cyclohexane, ball and stick model
Figure 3.1x5
Copyright © 2003 Pearson Education, Inc. publishing as Benjamin Cummings
• groups of atoms that participate in chemical reactions
• determine the chemical properties of molecules
• Examples: acidity, solubility
What are functional groups and what do they do?
-OH -COOH -NH2 -CH3
Copyright © 2003 Pearson Education, Inc. publishing as Benjamin Cummings
What affects solubility in water?
• Molecules with +/- charge are usually hydrophilic or “water-loving”
• Molecules with no charge and non-polar are usually hydrophobic and not soluble in water
Copyright © 2003 Pearson Education, Inc. publishing as Benjamin Cummings
• Polymers are long chains of smaller molecular units called monomers
• A huge number of different polymers can be made from a small number of monomers
How do cells make so many different molecules that are needed for life?
Copyright © 2003 Pearson Education, Inc. publishing as Benjamin Cummings
• Carbohydrates are a class of molecules
– Monosaccharides: glucose, fructose, ribose
– Disaccharides: maltose, sucrose, lactose
– Polysaccharides: starch, glycogen
CARBOHYDRATES
Copyright © 2003 Pearson Education, Inc. publishing as Benjamin Cummings
• are single-unit sugars
• a multiple of CH2O
• fuels for cellular work
Monosaccharides
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• Glucose, ball and stick model
Figure 3.4x
Copyright © 2003 Pearson Education, Inc. publishing as Benjamin Cummings
disaccharides
Glucose Glucose
Maltose
Figure 3.5
Sucrose
glucose fructose
Dehydration synthesis
Copyright © 2003 Pearson Education, Inc. publishing as Benjamin Cummings
• Maltose, ball and stick model
Figure 3.5x
Copyright © 2003 Pearson Education, Inc. publishing as Benjamin Cummings
• Sucrose, ball and stick model
Figure 3.6x
Copyright © 2003 Pearson Education, Inc. publishing as Benjamin Cummings
• Molecules, including non-sugars, taste sweet because they bind to “sweet” receptors on the tongue
Why is sugar sweet?
Table 3.6
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Polysaccharides are long chains of sugar units
• Size: thousands of linked monosaccharides
• purpose: energy storage, structural
Copyright © 2003 Pearson Education, Inc. publishing as Benjamin Cummings
• Starch (plants) and glycogen (animals)
• Cellulose (plants) and chitin (insects, fungi)
Figure 3.7
Starch granules in potato tuber cells
Glucosemonomer
STARCH
GLYCOGEN
CELLULOSE
Glycogen granules in muscle tissue
Cellulose fibrils ina plant cell wall
Cellulosemolecules
Copyright © 2003 Pearson Education, Inc. publishing as Benjamin Cummings
• Starch Cellulose
Figure 3.7x
= fiber indigestible
Copyright © 2003 Pearson Education, Inc. publishing as Benjamin Cummings
• hydrophobic
• composed largely of carbon and hydrogen
• Purposes:
- energy-storage
- insulation, cushioning
- membranes
- signals
Lipids include fats, oils, and steroids.
Copyright © 2003 Pearson Education, Inc. publishing as Benjamin Cummings
• Fats are triglycerides
– one glycerol molecule linked to three fatty acids
– fatty acid chains often differ
Fatty acid
Copyright © 2003 Pearson Education, Inc. publishing as Benjamin Cummings
• Saturated fats lack double bonds
– solid at room temperature (lard)
• Fatty acids of unsaturated fats contain double bonds– liquid at room temperature (plant oils)
• Trans fats have “wrong way” double bonds
Figure 3.8C
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• both polar and nonpolar portions
• major component of cell membranes
Figure 3.9
QuickTime™ and aTIFF (Uncompressed) decompressorare needed to see this picture.QuickTime™ and aTIFF (Uncompressed) decompressorare needed to see this picture.
Phospholipids
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Waxes form waterproof coatings and can prevent organisms from drying out or getting wet
QuickTime™ and aTIFF (Uncompressed) decompressorare needed to see this picture.
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Steroids are often hormones
testosteroneestrogen
Anabolic steroids
Hormone Replacement Therapy
Copyright © 2003 Pearson Education, Inc. publishing as Benjamin Cummings
• Cholesterol
• Membranes
• Precursor to Vitamin D, bile salts
Figure 3.9x1
HDL High Density Lipoprotein
LDL Low Density Lipoprotein
Copyright © 2003 Pearson Education, Inc. publishing as Benjamin Cummings
• Proteins are involved in – cellular structure
– movement
– nutrition
– defense
– transport
– communication
• Enzymes regulate chemical reactions
Proteins are essential to the structures and activities of life
Figure 3.11
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– Their diversity is based on different arrangements of amino acids
composed of 20 kinds of amino acids9 a.a. must be consumed in food
Proteins are the most structurally and functionally diverse of life’s molecules
Copyright © 2003 Pearson Education, Inc. publishing as Benjamin Cummings
• Each amino acid contains:
– an amino group
– a carboxyl group
– an R group, which distinguishes each of the 20 different amino acids
Aminogroup
Carboxyl (acid)groupFigure 3.12A
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• Each amino acid has specific properties
Leucine (Leu)
Figure 3.12B
Serine (Ser) Cysteine (Cys)
HYDROPHOBIC HYDROPHILIC
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• Cells link amino acids together by dehydration synthesis
• Peptide bonds
Amino acid Amino acid Dipeptide
Dehydrationsynthesis
Carboxylgroup
Aminogroup
PEPTIDEBOND
Figure 3.13
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• A protein consists of polypeptide chains folded into a unique shape
– shape determines the protein’s function
– A protein loses its function when its polypeptides unravel
A protein’s specific shape determines its function
Figure 3.14A Figure 3.14B
Copyright © 2003 Pearson Education, Inc. publishing as Benjamin Cummings
A protein’s primary structure is its amino acid sequence
Secondary structure is polypeptide coiling or folding produced by hydrogen bonding
Figure 3.15, 16
Amino acid
Hydrogen bond
Alpha helix
Pleated sheet
Primarystructure
Secondarystructure
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Tertiary structure is the overall shape of a polypeptide
Quaternary structure is the relationship among multiple polypeptides of a protein
Figure 3.17, 18
Polypeptide(single subunitof transthyretin)
Transthyretin, with fouridentical polypeptide subunits
Tertiarystructure
Quaternarystructure
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• 2 Nobel prizes - Chemistry and Peace
Linus Pauling contributed to our understanding of protein structure and function
Figure 3.19
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• Nucleic acids such as DNA and RNA serve as the blueprints for proteins
• They ultimately control the life of a cell
• DNA sequence is inherited by progeny
Nucleic acids are information-rich polymers of nucleotides
Copyright © 2003 Pearson Education, Inc. publishing as Benjamin Cummings
• The monomers of nucleic acids are nucleotides
Phosphategroup
SugarFigure 3.20A
– Each nucleotide is composed of a sugar, phosphate, and nitrogenous base
Nitrogenousbase (A)
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• The sugar and phosphate form the backbone for the nucleic acid
Sugar-phosphatebackbone
Nucleotide
Figure 3.20B
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• DNA consists of two polynucleotides twisted around each other in a double helix
Figure 3.20C
– The sequence of the four kinds of nitrogenous bases in DNA carries genetic information
Nitrogenousbase (A)
Basepair