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Charles Neal Stewart, Jr. Ivan Racheff Chair of Excellence of Plant Molecular Gentics

Professor of Plant Science November, 2016

Mailing address Department of Plant Sciences Voice 865 974 6487 2431 Joe Johnson Drive FAX 865 946 1989 Room 252 Ellington Plant Sciences nealstewart@utk.edu The University of Tennessee Knoxville, TN 37996-4561 Website: http:// plantsciences.utk.edu/stewart.htm Education 1993 Ph.D. Biology (Plant Physiology), Virginia Polytechnic Institute and State

University 1990 M.S. Biology (Ecology), Virginia Polytechnic Institute and State University 1988 M.A. Education, Appalachian State University 1984 B.S. Horticulture, B.S. Agricultural Education, North Carolina State University Professional appointments Current: 2002- Ivan Racheff Chair of Excellence in Plant Molecular Genetics and

Professor, Department of Plant Sciences, University of Tennessee 2009- Adjunct Professor, University of Tennessee Department of Food Science 2009- Co-director Tennessee Plant Research Center 2007- BioEnergy Science Center, Oak Ridge National Laboratory 2004- Core Faculty Member, Genome Science and Technology, University of

Tennessee 1996- Adjunct Senior Research Scientist and Professor, University of Georgia

Department of Crop and Soil Science Past: 2011-2014 Senior Bioscientist, Oak Ridge National Laboratory 2005-2009 Cofounder and Director of Technology Development, MycoGenomix,

LLC 2001-2004 Adjunct Professor, University of Tennessee Department of Entomology

and Plant Pathology 2000-2002 Associate Professor of Biology, University of North Carolina, Greensboro 1998-2002 Adjunct Associate Professor, UNCG Department of Nutrition 1997-2002 Adjunct Associate Professor, Crop Science, North Carolina State

University 1995-2000 Assistant Professor of Biology, University of North Carolina, Greensboro 1993-1995 Postdoctoral Associate, University of Georgia, Laboratory of Wayne

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Parrott, Department of Crop and Soil Science Awards and Honors • UTK Quest Scholar of the Week: March 25 2016 • National Academies committee member (2014-2016) that co-authored Genetically

Engineered Crops: Experiences and Prospects (2016) • AAAS Fellow, elected 2015 • Energy Innovation on the Hill, one of six ARPA-E project invited to Capitol Hill

2015 • Top Reviewer for Plant Science (Elsevier) 2012 • International academy member and advisory board member: Vienna International

Science Conferences and Events Association (Austria) 2009-current • Alumni Distinguished Speaker (Department of Biology, Virginia Tech) 2006 • Who’s Who in Fluorescence 2006-2010 • Nominee: Esquire Magazine’s Best and Brightest 2005 • UNC-Greensboro Research Excellence Award (top junior faculty research), 1999 • Best BioTechniques Cover of 1997 • Eugene P. Odum Award: Best Student Paper Presented in Ecology, Ecological

Society of America, Southeastern Chapter, 1992. • Member: Omicron Delta Kappa, The National Leadership Fraternity (since 1992) • Chief Justice of the Graduate Honor System, VPI & SU 1990-1993 Editorial positions Current editorships 2013- Plant Cell Reports, Editor-in-Chief (Reviews) 2013- Plant Biotechnology Journal, Associate Editor/Reviews Editor 2011- BMC Biotechnology, Plant Biotechnology Section Editor Current editorial boards 2013- Plant Biotechnology Journal 2013- Plant Cell Reports 2012- Plants 2009- Remote Sensing 2007- Sensors (Remote Sensing Section) 2005- BMC Biotechnology Past: 2014-2016 New Negatives in Plant Science 2012-2013 Plants, Guest Editor, special issues on the “Developmental Biology and

Biotechnology of Plant Sexual Reproduction” 2010-2011 Biofuels, Editor, special issue on “US-China Bioenergy” 2010-2011 Plant Science, Editor, special issue on “China-US Bioenergy” 2009-2015 Biofuels 2008-2011 BMC Biotechnology, Associate Editor 2008-2010 Journal of Biomedicine and Biotechnology, Editorial Board 2008-2010 BMC Research Notes, Associate Editor & Subject Advisor

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2007-2010 In Vitro Developmental & Cellular Biology-Plant, Associate Editor 2008 Sensors (Remote Sensing Section), Editor, Special Issues (2) on

Phytosensors 2004-2009 Trends in Plant Science, Editorial Board Invited seminars and lectures at institutions and companies Alpena Community College (Michigan Community College Biologists) 2007 Aquarium of the Pacific 2016 Auckland University 2000 Arizona State University 1997 BASF Plant Sciences 2000, 2013 Bayer CropSciences 2012 BIOTENZ (New Zealand) 2000 Bennett College, 1999 Brigham Young University 2014 CalTech/ Jet Propulsion Lab (NASA) 2001 Canterbury University (New Zealand) 2000 Cargill Biotechnology Unit 1997 Carson-Newman College 2008 Chinese Academy of Sciences, Institute of Botany (Beijing) 2004 Clemson University, 2000 Cone Memorial Hospital (Greensboro) 1998, 2001 CORMA, SCCL (Company) (Barcelona) 2010 Dow AgroSciences (Indianapolis) 1999 Duke University 1998 East Carolina University 2011 East Tennessee State University 1993, 2008 ECORC-CEF Ag and Agrifood, Ottawa, Canada 2000 French Embassy—Congressional representatives 2005 GeneArt Regensberg, Germany 2016 International Atomic Energy Association (Vienna) 2011 Krakow Technical University (Poland) 2013 Lewis and Clark College (Portland, Oregon), 2004 Life Technologies 2012 Lincoln University (New Zealand) 2000 Matthaei Botanical Garden (University of Michigan), 2000 MIT 2001, 2002 (Knight Journalism Fellowship Workshop presenter) Monsanto Company (St. Louis) 2005, 2008, 2009 National Science Bowl (Washington D.C.) 2005 NC A&T State University 1997 NC State University 1996, 2001 NC Student Association of Science: keynote address 1997 Ohio University 2001 Polish Academy of Sciences, Institute of Bioorganic Chemistry, Poznan, Poland 2013 Professional Engineers of North Carolina 2001

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Rutgers University 2000, 2001 Saint Ambrose University 2013 Syngenta (Novartis) Biotechnology Inc. 1997, 2012 Tennessee Tech University 2005 Texas A&M University 2010 ThermoFisher (LIFE) 2014 Virginia Tech 1996, 2002, 2006 (Distinguished Alumni Speaker, 2006) Universitat Internacional de Catalunya (Barcelona) 2009 University of California-Davis 2011 University of California-Irvine 2001 University of California-Santa Cruz 2003 University of Florida 2000 University of Georgia 1994 University of Hawaii-Manoa 2006, 2012 University of Illinois 2009 University of Kentucky 2005; 2010 University of Kuopio (University of Eastern Finland) 2007 University of Life Sciences in Posnan (Poland) 2013 University of Massachusetts (Amherst) 2009 University of Minnesota 2000 University of Montana 2009 University of Vermont 2004 USDA-ARS, Albany, CA 1999 Wake Forest University 1999 Warsaw Life Science University (Poland) 2013 Western Carolina University 1999 York University (Toronto, Canada) 2001 Invited speaker in national and international conferences, symposia and workshops 2016 Forum of Society Leaders on Genetically Engineered Crops-National Academy of

Science, Washington, D.C. Dec 7. 2016 Applied Synthetic Biology for National Security Workshop--MIT Lincoln

Lab/Office of Naval Research, Arlington, Virginia, Dec 5 2016 REDDIT NAS GE Crops—Ask Me Anything Science September 19 2016 American Society of Plant Biologists, Austin, Texas, July 10-13. 2015 Transformation-Enabled Genomic Research in Crop Plants, Clearwater, Florida

Nov. 15-18. 2015 Switchgrass III, Knoxville, Sept 30-Oct 2. 2015 Life Science Tennessee, Nashville, Sept 28. 2015 Cereal Engineering Consortium Workshop, Cambridge, Mass., June 8 & 9 2015. 2015 International Plant and Animal Genome Conference, San Diego, Jan 13 2015. 2014 Synthetic Biology Congress, London, October 20-21, 2014. 2014 CIBB 2014, Second International Congress of Biotechnology and Biodiversity,

Guayaquil, Ecuador, June 9-12, 2014.

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2014 Synthetic Biology Workshop, 36th Symposium on Biotechnology for Fuels and Chemicals, Clearwater Beach, Florida, April 28-May 1 2014.

2013 National Academies Keck Futures Initiative: The Future of Advanced Nuclear Technologies, Irvine California November 14-17 2013.

2013 EuroBiotech Congress 2013, Krakow, Poland, October 7-10, 2013. 2013 Perennial grasses workshop. International Plant and Animal Genome Conference,

San Diego, January 14 2013. 2013 Life Technologies workshop. International Plant and Animal Genome Conference,

San Diego, January 15 2013. 2012 Research integrity workshop. Annual Congress of the Society for In Vitro

Biology, Belleview, WA, June 5, 2012. 2012 American Association of Agricultural Education, Asheville, NC, May 17 2012. 2012 International Conference on Molecular Ecology, Vienna, Austria, Feb 4-7, 2012. 2011 ARPA-E Tool Development for Transformational Biotechnology Advances

Workshop, Arlington, VA, October 6-7. 2011 The Science of Gene Flow in Agriculture and its Role in Co-existence.

Washington, DC, September 7-8. 2011 Transgenes Going Wild? Risk Assessment of Transgene Introgression from Crops

into Wild Relatives. Lorentz Center, Leiden University, The Netherlands, July 11-15, 2011.

2011 International Conference on Plant Gene Discovery, Vienna, Austria, Feb 23-26, 2011.

2011 International Conference on Plant Transformation Technologies II, Vienna, Austria, Feb 19-22, 2011.

2010 International Biotechnology Symposium and Exhibition; Biotechnology for the Sustainability of Human Society. Rimini, Italy, September 14-18, 2010.

2010 Biosensors symposium, Annual Congress of the Society for In Vitro Biology, St. Louis, June 2010.

2010 Biofuels symposium, International Association of Plant Biotechnology Meeting, St. Louis, June 2010.

2009 Biofuels: Science and Innovation for Sustainable Development, San Francisco, June 29-30 2009.

2009 Biofuels symposium, Annual Congress of the Society for In Vitro Biology, Charleston, SC, June 10 2009.

2009 Transgene flow and containment symposium, Annual Congress of the Society for In Vitro Biology, Charleston, SC, June 9 2009.

2009 Research ethics. Research Ethics and Mentoring in Weed Science. Annual Meeting of the Weed Science Society of America, Orlando, February 10, 2009.

2008 China-US Workshop: Bioenergy Consequences for Global Environmental Change. Beijing, October 15-18.

2008 Weeds of agricultural importance: Bridging the gap between evolutionary ecology and crop science. Athens, GA Sept 11-13, 2008 2008 Workshop on Regulation, Annual Congress of the Society for In Vitro Biology,

Tucson, June 16 2008. 2008 Plants and People--Mutual Dependence in the 21st Century: PhD Symposium of

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the Zürich-Basel Plant Science Center-- ETH Zurich June 6 2008. 2008 Evolution of Weediness and Invasiveness: Molecular Genetics Approaches,

USDA-NRI- and WSSA-sponsored symposium and workshop at the annual Weed Science Society of America Meeting Chicago, Feb 7, 2008.

2008 The Biology and Business of Biofuels. January 28-30 2008, La Jolla, California. 2007 Symposium for Agricultural Biotechnology Risk Analysis Research (AGRA)

Workshop, at College Park, Maryland on December 5-6, 2007 2007 Lecturer, University of Kuopio, Finland. Intensive short course for graduate

students: Ecological Risk Assessment of GM Plants, May 7-9, 2007. 2007 (Plenary lecture) International Conference on Plant Transformation Technologies,

Vienna, Austria, February 4-7 2007. 2006 Mechanisms and Genetics of Glyphosate Resistance, Milwaukee, Dec 12 2006. 2006 Enabling Science Workshops for Explosive Detection: BioScience and

BioTechnology, Oak Ridge, TN Jan 25-26 2006. 2006 Genomics of Weedy and Invasive Plants, International Plant and Animal Genome

Conference, San Diego, Jan 16 2006. 2005 Scientific Meeting on Crop Gene Flow and the Occurrence and Consequence of

Gene Introgression between Crops and their Sexually Compatible Relatives. Kansas City, December 13-14.

2005 Symposium for Agricultural Biotechnology Risk Analysis Research, Riverdale, MD November 29-December 1 2005.

2005 National Agricultural Biotechnology Council Meeting and Symposium, Nashville, TN, June 28 2005.

2005 Workshop on Fluorescent Markers, Annual Congress of the Society for In Vitro Biology, Baltimore, June 5 2005.

2005 Weed Genomics: symposium at the Annual Weed Science Society of America meeting, Honolulu Feb 10, 2005.

2004 Australian Weeds Conference, Wagga Wagga, Australia, Charles Sturt University, September 5-7, 2004.

2004 Conference on Calcium-Regulated Photoproteins and Green-Fluorescent Protein, Friday Harbor Lab, Washington, August 31-September 3, 2004

2004 US EPA Development of Strategic Monitoring Programs for Ecological Impact from Plant-Incorporated Protectants (PIPs) Conference. August 3-5, 2004, Arlington, VA.

2004 DHS HSARPA Strategies for the Detection of Low Vapor Pressure Chemicals Workshop, April 6-7, 2004, Arlington, VA.

2003 GM Crop Environmental Risk Assessment Modeling Workshop II, Colorado Springs, October 9 & 10 2003

2003 International Joint Monte Verità Conference on Biodiversity Implications of Genetically Modified Plants, Ascona Switzerland, September 7-12 2003.

2003 Stakeholder workshop on the Future Directions and Research Priorities for the USDA Biotechnology Risk Assessment Research Grants Program: Washington, D.C. June 9-11.

2003 European Science Foundation Conference: Introgression from Genetically Modified Plants into Wild Relatives and its Consequences. Universiteit van

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Amsterdam, The Netherlands Jan 21-24. 2002 Knight Science Journalism Fellowships, Cells and Genes Workshop, Whitehead

Institute, MIT, Dec. 6. 2002 When Media, Science and Public Policy Collide: The Case of Food and

Biotechnology, Sponsored by the Pew Charitable Trust, John F. Kennedy School of Government, Harvard University. Nov 21.

2002 International Association for Food Protection Symposium on Agroterrorism, San Diego July.

2002 SPIE’s 16th Annual International Symposium on Aerospace/Defense Sensing, Simulation, and Controls, Orlando, Florida, April.

2002 Thirteenth Crucifer Genetics Workshop, Davis, California, March 2002 Scientific Methods Workshop: Ecological and Agronomic Consequences of Gene

Flow from Transgenic Crops to Wild Relatives, March, Columbus, Ohio, March 2001 Knight Science Journalism Fellowships, Cells and Genes Workshop, Whitehead

Institute, MIT, Dec 7. 2001 Defense Threat Reduction Agency Vegetative Effects Environmental Sensing

Workshop Alexandria, Virginia, October. 2001 European Science Foundation Workshop: Interspecific gene flow from oilseed

rape to weedy species. Rennes, France, June. 2001 American Bar Association Fourth Biotechnology Roundtable. Washington, D.C., May.

2000 Royal Commission on Genetic Modification, Wellington, New Zealand, invited witness. November.

2000 European Science Foundation Workshop: The Environmental Implications of Genetically Modified Plants with Insect Resistance Genes, Berne, Switzerland, September.

2000 Eleventh International Symposium of Bioluminescence and Chemiluminescence, Alisomar, CA September (Keynote).

2000 National Academy of Sciences Workshop: Ecological Monitoring of Genetically Modified Crops, Washington, July.

1999 Nature Biotechnology Agbiotech 1999 Conference, London, November. 1999 Second International Symposium on Green Fluorescent Protein, San Diego, May. 1999 Gene Flow and Agriculture: Relevance for Transgenic Crops, Staffordshire, UK,

April. 1999 Workshop on Ecological Effects of Pest Resistance Genes in Managed

Ecosystems. Washington, February. 1998 VII International Congress of Ecology, Symposium on the Ecology of Genetically

Modified Organisms, Florence, Italy, July 1998 International Symposium on Plant Molecular Biology, Lucknow, India,

December. 1997 International Symposium on Green Fluorescent Protein, New Brunswick, New

Jersey, October. 1997 Commercialisation of Transgenic Plants, Canberra, Australia, March. Symposium chair/co-chair

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• Genomics of Weedy and Invasive Plants, International Plant and Animal Genome

Conference, San Diego, Jan 12 2016. • Transformation-Enabled Genomic Research in Crop Plants, Clearwater, Florida

Nov. 15-18. • Switchgrass III, Knoxville, Sept 30-Oct 2 2015. • Genomics of Weedy and Invasive Plants, International Plant and Animal Genome

Conference, San Diego, Jan 13 2015. • Synthetic Promoters, World Forum on Biology, Savannah, GA, June 4, 2014. • Genomics of Weedy and Invasive Plants, International Plant and Animal Genome

Conference, San Diego, Jan 14 2014. • Genetic Improvement of Bioenergy Crops, 2013 In Vitro Biology Meeting, June

19, 2013, Providence, RI. • Genomics of Weedy and Invasive Plants, International Plant and Animal Genome

Conference, San Diego, Jan 15 2013. • International Conference on Molecular Ecology, Vienna, Austria, Feb 4-7, 2012. • Genomics of Weedy and Invasive Plants, International Plant and Animal Genome

Conference, San Diego, Jan 17 2012. • GE Crop Redux: Impact of Crop Biotechnology on Economy, Environment and

Society, SIVB, Raleigh, NC June 7 2011 • International Conference on Plant Gene Discovery, Vienna, Austria, Feb 23-26,

2011. • International Conference on Plant Transformation Technologies II, Vienna,

Austria, Feb 19-22, 2011. • Genomics of Weedy and Invasive Plants, International Plant and Animal Genome

Conference, San Diego, Jan 14 2011. • Genomics of Weedy and Invasive Plants, International Plant and Animal Genome

Conference, San Diego, Jan 13 2010. • China-US Workshop on Biotechnology of Bioenergy Plants, Knoxville,

November 16-17, 2009. • Risk Assessment and Transgene Containment in Transgenic Crops. World

Congress on In Vitro Biology, Charleston, SC, June 9, 2009. • Genomics of Weedy and Invasive Plants, International Plant and Animal Genome

Conference, San Diego, Jan 13 2009. • Evolution of weediness and invasiveness: molecular genetics approaches, USDA-

NRI- and WSSA-sponsored symposium and workshop, Chicago, Feb, 2008. • Genomics of Weedy and Invasive Plants, International Plant and Animal Genome

Conference, San Diego, Jan 15 2008. • Genomics of Weedy and Invasive Plants, International Plant and Animal Genome

Conference, San Diego, Jan 16 2007. • Genomics of Weedy and Invasive Plants, International Plant and Animal Genome

Conference, San Diego, Jan 17 2006. • Weed Genomics: symposium at the Annual Weed Science Society of America

meeting, Honolulu Feb 10, 2005.

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• Symposium of Genomics and Biotechnology of Woody Plants: UT biotech building dedication, Knoxville, TN October 2003.

• Bt transgenic crops, World Congress on In Vitro Biology, San Diego, June, 2000. • UNCG/Novartis Biochemistry and Biotechnology Symposium, Greensboro, April

2000. Symposium/conference organizing committee

• Plant Synthetic Biology: Miami, Florida, December 2016 • Publications ethics workshop. World Forum on Biology, Savannah, GA, June 3,

2014. • Research integrity workshop. Annual Congress of the Society for In Vitro

Biology, Belleview, WA, June 5, 2012. • Research Ethics and Mentoring in Weed Science. Annual Meeting of the Weed

Science Society of America, Orlando, February 10, 2009. • Gene flow among crops and their wild relatives - implications for biotech risk

assessment. St. Louis, December 2007. • International Conference on Plant Transformation Technologies, February 2006,

Vienna Austria (International Organizing Committee) • National Agricultural Biotechnology Council Meeting and Symposium, June

2005, Nashville, TN. • Eloise S. Cofer Family and Community Issues Forum: Biotechnology, Food, and

the Consumer. Oct. 2000 RTP, NC. • Second International Symposium on Green Fluorescent Protein, San Diego, May,

1999. • Fifth Biennial Conference on the Molecular and Cellular Biology of the Soybean,

Athens, GA, 1994.

University teaching experience UT Plant Sciences 605 Plant Genomics (Spring semesters, 2003-2010) Plant Sciences 501, 525 Research Ethics for the Life Sciences (Fall semesters 2007-present) First Year Studies 129 Genetically Engineered Food: Friend or Foe? Freshman Seminar (2007) Plant Sciences 353 Plant Biotechnology, Genetics, and Breeding (2008, 2010) Plant Sciences 452 and 552, Plant Biotechnology and Genetics (2012- present) UNCG Bio 111 Principles of Biology (1996-1998) Bio 424 Plant Physiology and Biotechnology (1996--2001) Bio 596 Molecular Biological Approaches in Research (1996-2000) Freshman seminar on biotechnology (1999) Bio 105 Concepts of Biology: Risks and Benefits of Biotechnology, Web-based and traditional sections (2000)

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Professional Societies American Association for the Advancement of Science (Fellow) American Society of Plant Biologists (Member, Science Policy Committee 2015-current) Society for In Vitro Biology Weed Science Society of America International Institutional Agreements with the University of Tennessee University of Amazonas (Brazil) Scientific and Cultural Cooperation Professional Service and Training Regulatory service: US EPA FIFRA Scientific Advisory Panel and section author Oct.

19, 2000: Bt/GMO ecological effects (Monarch butterfly and gene flow); • US EPA FIFRA Scientific Advisory Panel and section author Oct. 5, 2004: Viral coat protein genes, Arlington, VA.

Grant panels: USDA Biotechnology Risk Assessment Grants Program, 1999 • USDA

NBIAP Special grant for Information Systems for Biotechnology, 2000. (Chair) • USDA CSREES Special Grant for Tropical and Subtropical Agricultural Research Program (TSTAR) – Pacific, 2006; 2009. • KTDRC Proposal Evaluation Committee 2007-2011. • AAAS: Missouri Life Sciences Trust Fund 2008 •AAAS: King Abdulaziz City for Science & Technology 2008, 2009, 2010 (completed project review 2013) • USDA Biotechnology Risk Assessment Grants Program, 2014 • USDA NIFA Biotechnology Risk Assessment Grants Program, 2015, panel manager • USDA NIFA Biotechnology Risk Assessment Grants Program, 2016, panel manager • USDA ARS NP 301, 2016, retrospective review panelist•

Proposal reviewer: USDA NIFA Biotechnology Risk Assessment Panel (2014) • USDA-

NRI (1996-2006) • USDA SBIR (2004-2005, 2008-2012) • USDA Biotech Risk Assessment Grants Program (1995-2004) •NASA (1999-2001) • NSF (1998- current) •Consortium for Plant Biotechnology Research (2001- 2003) • NSERC (Canada; 1999, 2005) • Vanderbilt University Discovery Grant Program (2004) • Kentucky Science and Engineering Foundation R&D Excellence Grants Program (2005) • South Caucasus Cooperative Research Program (SCCRP) of the U.S. Civilian Research and Development Foundation (CRDF) (2005; 2010) • USAID BBI (2006) • SEEDS, Ohio State University OARDC (2006; 2010) • Kentucky Tobacco Research and Development Center (2007) • NC Biotechnology Center Biotechnology Research Grants (2008) • DOE GTL Program (2009) • US Army Engineer Research and Development Center (2009) • Maryland Technology Transfer Fund (2009) • Danish Council for Strategic Research Peer Review College (2009-). Army Research Office (2010) •New Eurasian Foundation (2011, 2013, 2014) •Kentucky Agricultural Experiment Station Hatch Grant (2012) •US

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PTO Patents for Humanity (2013) •BeIPD-COFUND Postdoc Fellowship, University of Liège Research Council (2013, 2015) • Science Foundation of Ireland (2014; 2015)• National Science Center, Poland (2015) • Austrian Science Fund (2016)

Manuscript reviewer (* indicates journals reviewed for during the past 12 months): ABC

Botanica; Acta Agriculturae Scandinavia; African Journal of Biotechnology; Agriculture; Agriculture, Ecosystems and Environment; Algorithms, American Journal of Botany; Biocatalysis and Agricultural Biotechnology, Biochimica et Biophysica Acta; *BioEnergy Research; Biofuels; Bioproducts & Biorefining; Bioinformatics; Bioorganic Chemistry; BioTechniques; Biotechnology for Biofuels; Biotechnology Journal; Biotechnology Progress; BMC Bioinformatics; BMC Biology; BMC Biotechnology; BMC Evolutionary Biology; BMC Genomics; *BMC Plant Biology; California Agriculture; Canadian Journal of Plant Science, Cellular and Molecular Life Sciences; Cereal Chemistry; Chemosphere; Conservation Biology; Critical Reviews in Plant Science; Crop Protection; Crop Science; Ecology; Ecology Letters; Ecological Applications; Ecotoxicology; Ecotoxicology and Environmental Safety; Environmental Biosafety Research; Environmental Management; Environmental Science and Technology; Environmental Toxicology; Euphytica; *Evolutionary Applications; Foodborne Pathogens and Disease; *Frontiers in Plant Science; Functional and Integrative Genomics; GCB Bioenergy; Gene; Gene Regulation and Systems Biology; Genetics and Molecular Biology; Heredity; HortScience; IEEE Journal of Selected Topics in Earth Observations and Remote Sensing; IEEE Sensors Journal; International Journal of Molecular Sciences; International Journal of Plant Sciences; In Vitro Cellular and Developmental Biology-Plant; Journal of Agricultural and Food Chemistry; Journal of Applied Ecology; Journal of Biotechnology; Journal of Botany; Journal of Ecology; *Journal of Experimental Botany; Journal of Industrial Microbiology and Biotechnology; Journal of Plant Physiology Microbial Ecology; Letters in Applied Microbiology; Molecular Biology and Evolution; Molecular Breeding; *Molecular Ecology; Nature; *Nature Biotechnology; *Nature Genetics; Nature Protocols; New Phytologist; Nucleic Acids Research; Pest Management Science; Planta; Plant Biology; *Plant Biotechnology Journal; Plant Breeding; *Plant Cell Reports; Plant Cell, Tissue & Organ Culture; The Plant Genome; *Plant Journal; Plant Methods; Plant Methods; Plant Molecular Biology; Plant Physiology; Plant Science; *PLoS ONE; Proceedings of the National Academy of Science USA; Proceedings of the Royal Society: Biological Sciences; Science; Science and Engineering Ethics; Scientific Reports; Sensors; Southeastern Naturalist; Theoretical and Applied Genetics; Transgenic Research; Trends in Biotechnology; Trends in Ecology and Evolution; Trends in Genetics; Trends in Plant Science; Vaccine; Weed Science.

Book proposal reviewer: Wiley Publishing, Elsevier Publishing, Blackwell Publishing,

Oxford University Press, Cambridge University Press, Springer Press; Wiley and Sons; Wiley-Blackwell.

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Conference session chair: American Society of Plant Physiologists National Meeting,

1995 (session: Plant/insect interactions). • International Symposium on Plant Molecular Biology, Lucknow, India, January, 1998 (session: Insect resistant transgenic plants) • Symposium on the Ecology of Genetically Modified Organisms, INTECOL, Florence, Italy, 1998 (session: Ecology of GMOs II). • lead paper: Gene Flow and Agriculture: Relevance for Transgenic Crops, Staffordshire, UK, April, 1999 (session: Consequence of gene flow between higher plants and other organisms) • Second International Symposium on Green Fluorescent Protein, San Diego, May, 1999 (session: Impact of GFP on agbiotech). • Introgression from Genetically Modified Plants into Wild Relatives and its Consequences Universiteit van Amsterdam, The Netherlands Jan 24, 2003 (session: Monitoring: the magic 4: regulation, field studies, modeling, and assessment) • Symposium of Genomics and Biotechnology of Woody Plants: UT new biotech building dedication, Knoxville, TN October 18, 2003 (session: Woody plant genomics) •Annual Congress of the Society for In Vitro Biology, Minneapolis, June 6 2006 (session: Plant biotechnology). •Annual Congress of the Society for In Vitro Biology, Indianapolis, June 10 2007 (session: Plant transformation: improved vector components). •20th Symposium on Biotechnology for Fuel and Chemicals (Advances in bioenergy feedstocks and plant science) • Weed Science Society of America (session: Posters II: Soil, Climate and Weed Biology), 2009 • International Biotechnology Symposium and Exhibition; Biotechnology for the Sustainability of Human Society. Rimini, Italy, September 14-18, 2010 (session: Biotechnology for Bioenergy-Lignocellosic) • The Science of Gene Flow in Agriculture and its Role in Co-existence, Washington, DC, September 7-8, 2011 (session: Gene Flow in the Environment) • International Conference on Molecular Ecology, Vienna, Austria, Feb 4-7, 2012 (session: Applied Molecular Ecology) •Eurobiotech Congress, Krakow, Poland, Oct 7-10 2013 (session: Plant Genetic Engineering) • Society for In Vitro Biology, June 3 2014 (session: Synthetic Promoters)

Continuing education: Good Laboratory Practices Workshop May 17-18, 2004, West

Coast Quality Training Institutive. Consulting: Agriculture and AgriFood Canada, Biotechnology Institute, Dow

AgroSciences, Edenspace Systems Corporation, EPA, ETH-Zurich, Expert witness- various, Jupiter Entertainment, National Public Radio, Oak Ridge National Lab, Round Table Group, Syngenta Seeds, Syngenta Biotechnology Research Inc.

Media Advisor: National Public Radio: The DNA Files, 2007-2008; Jupiter

Entertainment/Discovery Channel, 2008: IMDb: http://www.imdb.com/name/nm4827797/?ref_=nv_sr_1

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Current graduate students advised—degree goal • Reggie Millwood—PhD • Chelsea Johnson—MS • Shamira Sultana--MS • Tammy Stackhouse—MS • Joshua Grant—MS

Current postdocs, research scientists, research assistant professors

• Mitra Mazarei 2007- (research scientist) • Elizabeth Dlugosz 2014- • Taylor Frazier 2016- • Kyunghee Kim 2016- • Caroline Rempe 2016- • Agnieska Piatek 2016-

Current technical/admin staff

• Reginald Millwood 1999- • Holly Baxter 2010- • Jennifer Hinds 2010- (administrative specialist) • Ben Wolfe 2013- • Marcus Laxton 2013-

MS graduates, year of graduation, current position • Staci M. Leffel, 1998, UNCG, Meso-Scale Diagnostics. • Brian K. Harper, 1999, UNCG, research scientist, Syngenta Agribusiness

Biotechnology Research, Inc. • Derrick A. Pulliam, 1999, UNCG, research scientist, BASF. • Matthew D. Halfhill, 2000, UNCG, associate professor, St. Ambrose University • Tanya Chalk, 2002, UNCG, research scientist, Syngenta Agribusiness

Biotechnology Research, Inc. • Kevin Markham, 2002, UNCG, research scientist, Syngenta Agribusiness

Biotechnology Research, Inc. • Mitra Kooshki, 2002, UNCG, research scientist, Wake Forest Medical School • Laura C. Hudson, 2003, UT, assistant professor, Pfeiffer University. • Nrupali Patel, 2003. UT. postdoc, Rutgers.H.S. Moon, 2006. UT. Research

Scientist, Monsanto • Kellie Burris, 2006, UT. postdoc, UT • Blake Joyce, 2008 UT, postdoc, University of Arizona • Christy Rose, 2009, UT, physician assistant • Jason Burris, 2010, PhD student, research associate, UT • Reggie Millwood, 2011, PhD student, research associate, UT • Amy Yancey, 2011, development officer, University of Virginia • Hollis Rice, 2013, research associate, UT • Kristen Higginbotham, 2013 (FST), food technologist, West Liberty Foods

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• Michael Fethe, 2013, research scientist, Novozymes • Holly Baxter, 2014, research technician, UT • Mat Halter, 2014, research scientist, Dupont Tate & Lyle • Thomas Lane, 2014 (GST), research technician, UT • Gracie Collins, 2016, Technician, CIBUS •

PhD graduates, year of graduation, current position

• Harry A. Richards, IV, 2002, Research Assistant Professor, UT • Matthew D. Halfhill (co-advised), 2003, associate professor, St. Ambrose

University • Jason Abercrombie, 2007, teacher, Webb School • Joshua Yuan (co-advised) 2007, associate professor, Texas A&M University • Brian Leckie, 2008, Assistant Professor, Tennessee Tech • Murali Rao, 2008, statistician and research scientist, Land O’Lakes • Kellie Burris (FST program), 2011, postdoc, UT • Hong S. Moon 2011, research scientist, Monsanto • Jingyu Lin, 2011 (mentor, financial support and committee member)—postdoc,

UT. • Blake Joyce, 2013, postdoc, University of Arizona • Charleson Poovaiah, 2013, postdoc, Syracuse University • Wenzhi Xu—PhD (Suchuan Agriculture University 2012-2014) • Wegi Aberra Wuddineh, 2015, postdoc, University of New Hampshire • Jason Burris, 2016, postdoc, NC State University • Jonathan Willis, 2016, postdoc, USDA-ARS, Albany, Calif. • Caroline Rempe, 2016 (GST), postdoc UT • Gaia Pigna 2016 (University of Milan)

Past postdocs • Dean Chamberlain, 1998-2000, research scientist, KBI BioPharma Inc.. • Leena Sharma Tripathi, 2000, research scientist, IITA, Nigeria • Elizabeth Tomlin, 1998-2000, lecturer, UNCG • Vipaporn Phuntumart, 2001-2002, associate professor, Bowling Green State

University • Nathalie Vallee 1998-2003 pharmaceutical sales, France • Vinitha Cardoza 2000-2003, research scientist, BASF • Harry Richards, 2002-2005, Research Assistant Professor, UT • Chhandak Basu 2003-2005, assistant professor, California State University-

Northridge • Matt Halfhill 2003-2005, associate professor, St. Ambrose University • Irina Teplova 2003-2005, research scientist, New Jersey College of Medicine • Mentewab Ayalew 1999-2005, assistant professor, Spelman College

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• Hani Al-Ahmad 2006, summers 2007, 2008, 2009, 2011, 2012, 2013 assistant professor, An-Najah National University, Palestine.

• Dilip Panthee 2005-2007, associate professor, North Carolina State University • Ghazala Nasim (visiting scientist), Professor, University of the Punjab) 2007;

deceased 2013. • Bing He 2008 (visiting scientist). • Jason Abercrombie 2008-2009, , teacher, Webb School, Knoxville • Jun Hu 2008-2010, research scientist, NYU • Shuangyan Chen 2009-2010, Chinese Academy of Science, Institute of Botany,

Beijing • Wei Wei 2009-2010, Chinese Academy of Science, Institute of Botany, Beijing • Romesh K. Salgotra 2010, associate professor, Sher-e-Kashmir University of

Agricultural Sciences and Technology-Jammu, India • Murali Rao, 2009-2010, statistician and research scientist, Land O’Lakes • Dave Mann 2008-2011, (postdoc 2008, research scientist 2009-2011), research

scientist, Dow AgroSciences • Szabolcs Rudnoy, postdoc, Eotvos Lorand University (Budapest, Hungary) 2011 • Gisele Schoene 2010-2012; in Brazil • Charles Kwit 2009- (research scientist 2009-2011; research assistant professor

2011- 2013), assistant professor, UTK • Sangmin Chung 2012- 2013 visiting professor, Dongguk University, Seoul,

South Korea • Madhugiri Rao 2011-2014, postdoc, New Mexico State University • Muthukumar Balasubramaniam 2009-2014, research scientist, University of

Illinois • Lisa Worthen Alexander 2011-2014, research geneticist, USDA-ARS • Yi Sang 2012-2015, assistant professor Lanzhou University, China • Rongjian Ye 2012-2015, postdoc UT • Kellie Burris 2011-2016, postdoc NCSU • Jingyu Lin 2012-2016, postdoc UT • Scott Lenaghan 2013-2016, research assistant professor, CRC, assistant professor,

UT, Department of Food Science and Technology • Catherine Hatcher 2014-2016, research scientist, University of Florida • Christine Ondzighi-Assoume 2014-2016, assistant professor, Tennessee State

University • Priya Ranjan 2010-2015 (postdoc and research scientist) currently research

assistant professor, Department of Plant Sciences, UTK • Wusheng Liu 2008-2015 (postdoc) currently research assistant professor,

Department of Plant Sciences, UTK • Yanhui Peng 2008-2014 (postdoc), currently on staff at the CDC and a visiting

scientist at UT 2014-2016 • Jonathan Mielenz 2014- 2016 (visiting scholar) • Taniya Dhillon 2015-2016

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Visiting graduate students

• Sari Himanen, University of Kuopio, Finland, 2007, postdoc, Univ. Kuopio • Vanessa Cardinali, Escola Superior de Agricultura, Brazil, 2008 • Marion Dubosquielle, 2013 summer, National Agronomic Engineering Post

Graduate School, Toulouse, France • Asjad Ali, 2013, Dongguk University, Seoul, South Korea

Past technical staff, current position • Steve Mabon 1995-2000, research scientist, NIH • Leslie Ireland 1998-2000, research scientist, Wake Forest Medical School • Sheila Branch, 1998-2001, not in science • Dandan Zhang 2008, PhD student, Harvard University • Keith Gwathmey 2009, MS student UT Medical School • Kalyani Telu 2009, research associate, ORNL • Michelle Hassler (administrative specialist) 2009-2010, graduate student, UTK • Laura Good Abercrombie 2003-2012, no longer in science. • Derek Green 2010-2012, law school student, University of Alabama • Basmah Kadambalath 2012 (administrative specialist), student, UTK • Jasmine John 2012-2013 • Johnathan Branson 2011-2013, independent contractor • Jason Burris 2002-2013, PhD student, UT • Audrey Hill 2013- 2014, student • Ellen Haynes 2010-2014, no longer in science • Gracie Collins 2013-2014, MS student, UT • Sara Allen 2011-2015, research technician, BioPet Vet Lab • John Alexander 2013-2015 • Mary Rudis 2005-2015, retired • Ellie Terry-Emert 2015-2016, medical sales • Gaia Pigna 2014-2016, PhD student University of Milan

Patents Issued Method of stimulating an immune response by administration of host organisms that express intimin alone or as a fusion protein with one or more other antigens. U.S. Patent 6,261,561 issued July 17, 2001. Inventors: C. Neal Stewart, Jr., Marian L. McKee, Alison D. O’Brien, and Marian R. Wachtel. Plants and plant cells expressing histidine tagged intimin. U.S. Patent 6,406,885 issued June 18, 2002. Inventors: C. Neal Stewart, Jr., Marian L. McKee, Alison D. O’Brien, and Marian R. Wachtel. Method of stimulating an immune response by administration of host organisms that express intimin alone or as a fusion protein with one or more other antigens. U.S. Patent 6,881,411

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issued April 19, 2005. Inventors: C. Neal Stewart, Jr., Marian L. McKee, Alison D. O’Brien, and Marian R. Wachtel. Cabbage proteinase inhibitor gene confers resistance against plant pests. U.S. Patent 6,927,322 issued August 9 2005. Inventors: C. Neal Stewart, Jr. and Roxanne M. Broadway. Antibiotic resistance conferred by a plant ABC transporter gene when expressed in transgenic plants. U S Patent 7,973,213 B2 issued July 5 2011. Inventors: C. Neal Stewart, Jr., and Mentewab Ayalew. US Patent applied for April 29, 2005, US SN60/676,476; August 30, 2005, US SN60/712,456; PCT International Application PCT/US2006/16447 filed April 28 2006, Accepted for examination June 27 2008; US SN11/912,713 filed October 26 2007.) Switchgrass promoter (PvUBI2) and uses thereof. US Patent No. 8,604,276 issued December 10 2013. Inventors: C. Neal Stewart, Jr.; David D.G. Mann. U.S. provisional patent applied for June 9, 2009. US SN 61/185,469; regular filing June 9, 2010, US SN 12/797,248. Inducible plant promoters and uses thereof. US Patent 9,157,087 issued October 13 2015. Inventors: C. Neal Stewart, Jr., Mitra Mazarei, and Wusheng Liu. US provisional patent applied for June 28 2012; converted 3/11/2013 US 13/794,255. Pending Soybean cyst nematode inducible promoters. Inventors: C. Neal Stewart, Jr., Mitra Mazarei, and Wusheng Liu. Filed 6/28/2013 Nationalized PCT Argentina (P 13 01 02330). Inducible promoters and use thereof. Nationalized PCT (Brazil) BR 11 2014 029968 4 Filed 6/28/2013. Inventors: C. Neal Stewart, Jr., Mitra Mazarei, and Wusheng Liu. Inducible promoters and use thereof. Nationalized PCT (Canada) S/N 2,873,798 Filed 6/28/2013. Inventors: C. Neal Stewart, Jr., Mitra Mazarei, and Wusheng Liu. Increasing soybean defense against pathogens. Inventors: C. Neal Stewart, Jr., Jingyu Lin, Mitra Mazarei, and Feng Chen. US provisional patent applied for December 28, 2011; converted 10/31/2012 PCT/US 12/62759. Increasing soybean defense against pests. Inventors: C. Neal Stewart, Jr., Jingyu Lin, Mitra Mazarei, and Feng Chen. Nationalized PCT/US 14/369,565 filed 7/8/2014. Switchgrass promoter (PvUBI1) and uses thereof. Inventors: C. Neal Stewart, Jr.; David D.G. Mann, U.S. patent applied (continuation) for July 25, 2013. US SN 13/950,545, published December 19, 2013 and assigned publication number US-2013-0340116-A1. Methods of plant transformation using transformable cell suspension cultures and uses

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thereof. Inventors: Jonathan Willis, Neal Stewart, Jason Burris and Mitra Mazarei. US patent filed June 2 2014 US 62/006,557; PCT filing June 2 2015 No. PCT/US2015/033753. Transformation and regeneration of improved switchgrass varieties in a liquid culture. Inventors: Jonathan Willis, Neal Stewart, Jason Burris and Mitra Mazarei. US patent filed filed November 15, 2016 SN 15/311,199. Resistance genes to soybean cyst nematode based on epigenetics. Inventors: Tarek Hewezi, Aditi Rambani, Neal Stewart, Mitra Mazarei and Vincent Pantalone. Provisional US Patent application filed 12/2014; PCT field 12/30/2015. SCN plants and the methods for making the same. PCT/US2015/067989 filed 12/30/2015. Inventors: Tarek Hewezi, C. Neal Stewart Jr., et al.; World Intellectual Property Organization publication July 7, 2016, WO 2016/109619. Novel methods for isolating and transforming protoplasts. US SN 62/346699, Inventors: Elizabeth M. Dlugosz, Scott C. Lenaghan, C. Neal Stewart, Jr. Provisional US patent filed June 7, 2016. Vectors for screening promoters and methods thereof, US SN 62/347356, Inventors: Scott C. Lenaghan, Taniya Dhillon, Elizabeth Dlugosz, C. Neal Stewart, Jr. Provisional US patent filed June 8, 2016.

Grants and Contracts $25 million as PI (total); $1.6 million annual average yield since tenure at UT; $2.8 million annual yield during the past 3 years Current: 2016-2107 Oil synthesis in leaves. Amfora. PI: Neal Stewart. $14,832. 2016-2019 SynPlastome 2.0. ARPA-E $3,500,000. PI: Neal Stewart, CoPIs. Henry

Daniell and Tazios Melis. 2016 Large seeded soybean., $20,000, Tennessee Soybean Promotion Board PI:

Neal Stewart. 2016 Molecular approaches to develop effective management tools against SCN.

$20,000. Tennessee Soybean Promotion Board. PIs: Neal Stewart & Tarek Hewezi; Co-PIs: Mitra Mazarei, Feng Chen,Vince Pantalone and Prakash Arelli.

2016 High throughput soybean transformation and genome editing. $50,000.

Tennessee Soybean Promotion Board PI: Neal Stewart.

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2015-2018 MRI: Acquisition of an IVIS Lumina K Series III real-time in vivo-in vitro

fluorescent and bioluminescent fast imaging system. NSF: $294,477. PI: Gary Saylor; CoPIs: Neal Stewart, Frank Loeffler, Steven Ripp.

2015-2017 BioEnergy Science Center, DOE. $777,600 subcontract from Oak Ridge

National Laboratory $125,000,000 (total). Switchgrass biotechnology; PI: Neal Stewart.

2013-2017 Switchgrass bioconfinement: delayed flowering, selective male- and seed-

sterility, and conditional total bioconfinement, USDA NIFA Biotechnology Risk Assessment Grants Program. $500,000, PI: Neal Stewart, co-PI: Zeng-Yu Wang (Noble Foundation), 2013-33522-20997.

Past:

2015-2016 Science focus area for genomic science: systems biology knowledgebase, PI

David Weston PI, ORNL DOE. Subcontract to UTIA: $245,000, co-PIs Neal Stewart and Priya Ranjan.

2015-2016 Meeting on Transformation-Enabled Genomic Research in Crop Plants. NSF:

$68,583. PI: Fredy Altpeter (UFL); coPIs: Nathan Springer, Neal Stewart. 2014-2016 Development of switchgrass (Panicum virgatum L.) transformable cell

suspension culture and a screening system for rapid assessment of cell wall genes for improved biomass for biofuels, phase 2. DOE-ARPA-E. $1,820,000 PI: Neal Stewart, Co-PI: Nicole Labbe.

2014-2016 Development of switchgrass (Panicum virgatum L.) transformable cell

suspension culture and a screening system for rapid assessment of cell wall genes for improved biomass for biofuels. Third-Party Contribution. $350,000. PI: Neal Stewart.

2011-2016 Integrated Biomass Supply Systems (IBSS) $15,000,000. USDA-NIFA, (Tim

Rials, PI) Switchgrass genetics project, Neal Stewart, co-PI, sub-budget $731,510

2014-2015 Fermentation of Agave for biofuel. $3304. ORNL. 2015-2015 Molecular approaches to develop effective management tools against SCN

Tennessee Soybean Promotion Board, $47,661 PIs: Neal Stewart & Tarek Hewezi; Co-PIs: Mitra Mazarei, Feng Chen,Vince Pantalone and Prakash Arelli.

20

2015-2015 Large seeded soybean. Tennessee Soybean Promotion Board, $14,981, PI: Neal Stewart.

2014-2015 Development of gene silencing to control kudzu bug in soybean. Tennessee

Soybean Promotion Board, $60,150, PI: Juan Luis Jurat-Fuentes; coPI Neal Stewart.

2013-2015 Virus detection. Wright State University/NSF $30,000 Neal Stewart and

Kellie Burris. 2013-2015 Syngenta research contract: soybean. $187,460. Stewart, PI. 2013-2015 Monsanto research contract: horseweed. $200,000. Stewart, PI. 2012-2015 BioEnergy Science Center, DOE. $1,155,600 subcontract from Oak Ridge

National Laboratory $125,000,000 (total). Switchgrass biotechnology. 2012-2015 Science focus area for genomic science: systems biology knowledgebase, PI

David Weston PI, ORNL $10M, DOE. Subcontract to UTIA: $498,415, co-PIs Neal Stewart and Priya Ranjan.

2012-2015 Gene flow in horseweed. $500,000 USDA-NIFA, PI: Junming Wang

(University of Illinois), co:PI Neal Stewart. Subcontract to UTIA, $176,767. 2014-2015 Screening genetic elements. BASF, $77,770. Neal Stewart. 2014-2015 “Fukusensor": A transgenic plant for reporting DNA damage from radiation.

National Academies Keck Futures Initiative. $50,000, PI: Neal Stewart, Co-PI: Scott Lenaghan.

2010-2015 Pollen-mediated gene flow in switchgrass. $399,995, PI, C.N. Stewart, Co-PI,

Charles Kwit. USDA-NIFA-BRAG, 2010-39211-21699. 2013-2014 Development of switchgrass (Panicum virgatum L.) transformable cell

suspension culture and a screening system for rapid assessment of cell wall genes for improved biomass for biofuels. DOE-ARPA-E. $441,747. PI: Neal Stewart, Co-PI: Nicole Labbe.

2014 Molecular approaches to develop effective management tools against SCN

Tennessee Soybean Promotion Board, $47,661 PI: Neal Stewart Co-PIs Mitra Mazarei, Feng Chen,Vince Pantalone and Prakash Arelli.

2014 Increased yield by overexpression a “large seed” gene. Tennessee Soybean

Promotion Board, $10,000 PI: Neal Stewart Co-PI Yanhui Peng.

21

2013-2104 Short and strong synthetic promoters for plant biotechnology. UTRF. $15,000. 2011-2014 Genome-wide association mapping of plant resistance to a virulent bacterial

pathogen, Pseudomonas syringae? $750,041, NSF-DEB, Brian Traw (U Pitt), PI, subcontract to UTIA-Neal Stewart $222,740.

2012-2013 Development of Production System for Emerging Feedstock for Double

Utilization. Sun Grant. Valtcho Jeliazkov (PI) Neal, Stewart (co-PI) $100,000, UT subaward, $30,000.

2011-2013 Field evaluation of transgenic switchgrass with low-lignin content for biomass

composition, sugar conversion yield and disease resistance, $83,965, Sun Grant, Dave Mann, Neal Stewart, Nicole Labbe, Mark Windham Zeng-Yu Wang.

2013-2014 Development of switchgrass (Panicum virgatum L.) transformable cell

suspension culture and a screening system for rapid assessment of cell wall genes for improved biomass for biofuels . DOE-ARPA-E. $441,747. PI: Neal Stewart, Co-PI: Nicole Labbe.

2013 Molecular approaches to develop effective management tools against SCN

Tennessee Soybean Promotion Board, $41,634 PI: Neal Stewart Co-PIs Mitra Mazarei, Feng Chen, Vince Pantalone and Prakash Arelli.

2010-2013 Ivy adhesive nanoparticles for biomedical applications, National Science

Foundation, $326,792 CBET-0965877. Mingjun Zhang, PI, Neal Stewart and Maozi Liu, co-PIs.

2010-2013 Biotechnological improvement of switchgrass for higher biomass yield.

$249,981 Southeastern Sungrant Center. Stewart, PI, David Mann, Muthukumar Balasubramaniam, Joe Bozell, Nicole Labbé, Erik Nilsen, Sarwan Dhir, co-PIs.

2010-2013 Phytosensors for crop security, precision agriculture and early detection.

930,668 USDA-CSREES special grant. Stewart, PI. 2008-2012 Biomolecular architectures molecular biology, $335,040, Army Research

Office, Stewart, PI. 2007-2012 Bioenergy Science Center, DOE-GTL. $1,780,000 subcontract from Oak

Ridge National Laboratory $125,000,000 (total). Switchgrass biotechnology. 2011-2013 Daylily transcriptomics. $3000. American Hemerocallis Society. 2010-2012 Switchgrass improvement. $184,300. PI, C.N. Stewart. Genera Energy, LLC.

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2010-2012 Bioinformatics support from ORNL (Priya Ranjan), $120,000, PI, Stewart. 2009-2012 Phytosensors for crop security and precision agriculture. $ 652,601. USDA-

CSREES special grant. Stewart, PI. 2009-2012 Arsenic phytosensors. $255,000 subcontract to UT of $750,000 total. Mark

Elless, PI, (Edenspace) Neal Stewart co-PI. 2008-2013 Quantifying transgene flow in papaya. $375,000, USDA-BRAP. Richard

Manshardt, PI., CN Stewart, co-PI. $175,000 sub. 2012-2012 Improved feedstocks (2). Corporate subcontract from ARPA-E award,

$109,000. Stewart, PI. 2012 Molecular approaches to develop effective management tools against soybean

cyst nematode (SCN) Tennessee Soybean Promotion Board, $29,178. PI: Neal Stewart Co-PIs Mitra Mazarei, Feng Chen,Vince Pantalone and Prakash Arelli.

2012 Plant-based nanoparticles. $15,000, University of Tennessee Research

Foundation Technology Maturation Grant; PI: Mingjun Zhang, co-PI: Neal Stewart.

2011 Molecular approaches to effective management tools against soybean cyst

nematode (SCN) Tennessee Soybean Promotion Board, $25,000. Co-PIs Mitra Mazarei, Feng Chen,Vince Pantalone and Prakash Arelli.

2011 Transgenic ferns. $15,000, University of Tennessee Research Foundation

Technology Maturation Grant. 2009-2011 Novel herbicide-resistant switchgrass. Feng Chen et al. 100,000. UTIA

Sungrant ($10,000 to Stewart) 2008-2011 Phytosensors for crop security. $694,492, USDA-CSREES special grant.

Stewart, PI. 2008-2011 Horseweed transcriptome sequencing, $30,000 Monsanto. Stewart, PI. 2006-2011 Biocontainment via recombination: removal of transgenes from canola pollen.

USDA-BRAG, $393,957 Neal Stewart, PI, Yi Li and David Ow, co-PIs. 2006-2011 Field evaluation of a transgene containment strategy for plant-made

pharmaceuticals applications in tobacco. USDA-BRAG $351,743, Maelor Davies, PI Orlando Chambers and Neal Stewart, co-PIs. $177,469 subcontract.

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2007-2011 Population genetics of glyphosate resistance spread in Conyza canadensis

(horseweed). Monsanto. $39,500 Stewart, PI. 2010-2011 Improved feedstocks. Corporate subcontract from ARPA-E award, $82,240,

Stewart, PI. 2010-2011 Horseweed resistance to glyphosate. Monsanto, $52,000 Stewart, PI. 2010-2011 Collection of new plant-based biodiesels and identification of the fuel-

chemical biosynthesis genes, $72,000, Science Alliance. Neal Stewart, Blake Joyce, Feng Chen.

2010-2010 Molecular approaches to effective management tools against soybean cyst

nematode (SCN) Tennessee Soybean Promotion Board, $25,000. Co-PIs Mitra Mazarei, Feng Chen,Vince Pantalone and Prakash Arelli.

2010 Statistical analysis, Land O’Lakes. $80,000, PI Stewart. 2010 HSAP High School Research Internships. Army Research Office. $6000,

Stewart, PI. 2007-2010 Comparative genomics guided genetic modification of switchgrass cell walls

for improved lignin characteristics and increased cellulose production. $250,000. Southeastern Sungrant Center. Stewart, PI, Joe Bozell, Nicole Labbé and Joshua Yuan, John Collier, Sarwan Dhir, co-PIs.

2007-2010 Introduction of cellulosomes into low lignin plants for improved cellulose and

hemicellulose digestion, $100,000 UTIA SunGrant. Stewart, PI, Joe Bozell, Nicole Labbé and Joshua Yuan, co-PIs.

2009 Fort Valley Summer Internship. $13,794. Stewart. (FVSU-NSF). 2007-2009 Elucidation of molecular mechanism for glyphosate tolerance in horseweed

Hatch grant/USDA special grant. 112,400. 2007-2009 Improved phytosensors for detection of environmental contaminants and plant

pathogens. Hatch grant/USDA special grant. 186,300. 2006-2009 Advanced fern bioreporters for arsenic. Phase II NSF-STTR- $180,000

subcontract from Edenspace. 2006-2009 Submillimeter-wave integrated micro-resonators for the investigation of the

dynamical properties of biological molecules. ARO/DTRA $500,000, Scott Barker, PI, Neal Stewart, co-PI $120,000 subcontract.

24

2006-2009 Rapid, reagent-less detection and discrimination of biological warfare (BW)

agents using multi-photon, multi-wavelength processes within bio-molecular architectures. ARO/DTRA $500,000, Peiji Zhao, PI, Neal Stewart co-PI $100,000 subcontract.

2009-2009 Molecular approaches to effective management tools against soybean cyst

nematode (SCN) Tennessee Soybean Promotion Board, $25,000. Co-PIs Mitra Mazarei, Feng ChenVince Pantalone and Prakash Arelli.

2008-2008 Molecular approaches to effective management tools against soybean cyst

nematode (SCN) Tennessee Soybean Promotion Board, 16,500. Co-PIs Mitra Mazarei, Vince Pantalone and Prakash Arelli.

2004-2008 Genetic load, fitness, and competition of insect resistant and tandem construct

crop × weed hybrids. USDA Biotechnology Risk Assessment Grants Program. 365,000, Stewart, PI, Matt Halfhill, Suzanne Warwick and Paul Raymer, Co-PIs.

2007-2008 Identification of commercially viable insect resistance traits for transgenic

crops Phase I NSF-STTR $24,975 subcontract from MycoGenomix LLC $120,000 (total).

2007-2008 Conference: Evolution of weediness and invasiveness: molecular genetics

approaches, USDA-NRI 10,000 and WSSA $5000. 2007 Molecular approaches to effective management tools against soybean cyst

nematode (SCN) Tennessee Soybean Promotion Board, 20,000. Co-PIs Mitra Mazarei, Vince Pantalone and Prakash Arelli.

2004-2007 Phytoremediation of heavy metal contamination by transgenic plants with

metallohistins, a new class of plant metal-binding proteins. Consortium for Plant Biotechnology. $212,000. Max Cheng, PI, Stewart and Beth Mullins, co-PIs.

2006-2007 Fern phytosensors for arsenic. NIH SBIR. $35,000 subcontract from $100,000

prime—Edenspace. 2006-2007 Insect bioassays. $12,000. MycoGenomix. 2005 Towards a soybean rust phytosensor. Tennessee Soybean Production Board.

$29,500. Stewart, PI, Vince Pantalone, Matt Halfhill, and Kurt Lamour, co-PIs. . 2004-2005 Insect resistance in ferns. Consortium for Plant Biotechnology. $20,000. Stewart,

PI.

Stewart, CV 25

2004-2005 Plant bioreporters for arsenic. Edenspace Corp. $100,000 Phase I STTR grant, NSF, Mark Elless, PI, Stewart co-PI $40,000 subcontract.

2004-2006 Biosurveillance, agricultural and environmental security: a coordinated,

innovative initiative. DIA/AFMIC. $2,000,000. Stewart, Buddy Moore, Gary Sayler, PIs.

2004 Genomics of glyphosate tolerant horseweed in Tennessee. Tennessee Soybean

Production Board. $24,500. Stewart, PI, Tom Mueller co-PI. 2003-2005 Chelating agents in transgenic for the bioremediation of lead. Edenspace Corp.

$250,000 Phase I SBIR grant, NSF, Mark Elless, PI, Stewart co-PI $50,000 subcontract.

2002-2003 Biological and chemical warfare agent sensing using terahertz frequency:

biological support addendum. Army MURI subcontracted through the University of Virginia. $50,000 C.N Stewart, PI.

2002-2004 Plants that detect landmines. $ 360,000. Dennis LaJeunesse, PI. $278,079 sub to

UT through the Army (SAIC 01-0613-31-1692-011). Stewart co-PI. 2002-2003 Chelating agents in transgenic for the bioremediation of lead. Edenspace Corp.

$100,000 Phase I SBIR grant, NSF, Mike Blaylock PI, Stewart co-PI $30,000 subcontract.

2002-2003 Novel genes for phytoremediation in plants. Edenspace Corp. $100,000 Phase I

SBIR grant, EPA, Mark Elless, PI, Stewart co-PI $30,000 subcontract. 2001-2002 Chemical reporting algae. $93,448. Oak Ridge National Laboratory/DOE. C.N.

Stewart, PI. 2001-2005 Movement and ecological performance of Bt transgenes from canola to wild

relatives. $240,000. USDA Biotechnology Risk Assessment Research Grants Program. 2001-03726. C.N. Stewart, PI, John All and Paul Raymer, Co-PIs.

2001-2006 Biological and chemical warfare agent sensing using terahertz frequency.

$5,000,000, ONR/ARO MURI. Tom Crowe (Univ of Virginia), PI. C.N. Stewart (among others) Co-PI (210,000 sub).

2001 Microarrays: A high throughput screening method to isolate TNT inducible

promoters. $25,000. UNCG GMAP, CN Stewart and Mentewab Ayelew, PIs. 2000-2005 Improved early detection of plant disease, $674,211, USDA special grant, C.N.

Stewart, CV 26

Stewart, Jr., PI. 2001-2003 Bioterrorism and water quality protection. EPA special grant, $998,900, CN

Stewart, PD/PI, Vince Henrich, PI/PD and Parke Rublee, PI. 2001-2003 Drought Stress Tolerance for the Midwest and South: Soybean Variety

Improvement. $1,260,000 United Soybean Board/American Soybean Association. T. E. Carter, Jr.,(NCSU) R. Boerma, (Univ. Georgia), J. Specht (Univ. Nebraska), T. Rufty, R. Wells, (NCSU), C. Sneller, L.C. Purcell (Univ Arkansas), T.S. Sinclair, J. Bennett (Univ. Florida), J. Orf (Univ. Minnesota) C. N. Stewart, Jr. co-PIs ($101,837 sub).

2001-2002 Engineered plants as biosensors: plant and human pathogen detection using

sentinel plants. $367,000 Defense Advanced Research Projects Agency (DARPA) CN Stewart, PD, Mentewab Ayalew, John DiBennedetto (STL), Kevin Kyle (STL) co-PIs.

2001-2003 Self-reporting space crops: edible biosensors. $60,000. NASA HEDS-01. CN

Stewart, PI. 1997-2002 Industry funding for GFP and soybean research. $880,000. CN Stewart, PI. 1999-2000 Novartis Biotechnology/Biochemistry Symposium $1000 NCBC. 1999-2001 Drought Stress: A National Program to Transfer Drought Tolerance to Soybean

Varieties. $987,000 United Soybean Board/American Soybean Association. T. E. Carter, Jr.,(NCSU) R. Boerma, R. Mian (Univ. Georgia), J. Specht (Univ. Nebraska), J. Orf (Univ. Minnesota), G. Lark (Univ. Utah), T. Rufty, R. Wells, R. Patterson (NCSU), C. N. Stewart, Jr. (UNCG) co-PIs. ($82,000 sub to UNCG).

1998-2001 The movement of an insecticidal transgene from canola into weeds: hybridization,

introgression and ecological effects. $210,242, USDA Biotechnology Risk Assessment Research Grants Program award 9804086. C.N. Stewart, PI, John All and Paul Raymer, Co-PIs.

1998 Equipment grant: Consortium to acquire a fluorescence spectrophotometer.

$31,000, NSF supplement, Mycogen Corporation, Novartis Crop Protection, C.N. Stewart, PI.

1998-2001 Continuation of enhanced root development and aluminum tolerance in soybeans:

transformation, physiological screening and conventional breeding. $66,000. North Carolina Soybean Growers Association. T.E. Carter, Jr., PI, T.W. Rufty, Jr. and C.N. Stewart, Jr., Co-PIs.

Stewart, CV 27

1997-2001 Intimin: Candidate for an E. coli O157:H7 anti-transmission vaccine.

$232,456. USDA NRICGP 9702074. Alison O’Brien, PI, Evelyn Nystrom-Dean, and C.N. Stewart, Co-PIs.

1997-1999 Green fluorescent protein as a whole plant marker: a powerful ecophysiological tool. $110,000. NSF Ecological and Evolutionary Physiology/Integrative Plant Biology award IBN-96-04528. C.N. Stewart, PI.

1997 Edible vaccine against Escherichia coli O157:H7. $2500. UNC-Greensboro, Faculty Grant Program. C.N. Stewart, PI. 1996 Transgene combinations for insect resistance in Arabidopsis. $3000. UNC-

Greensboro, Faculty Grant Program C.N. Stewart, PI. 1995 Gene pyramiding for insect resistance in Arabidopsis. $2000. UNC-Greensboro

New Faculty Grant Program, C.N. Stewart, PI. 1994-1998 Bt canola under selection: genotype and natural plant community shifts. $206,000,

USDA Biotechnology Risk Assessment Research Grants Program award 9166384. C.N. Stewart, PI, John All and Paul Raymer, Co-PIs, Univ. Georgia transferred to UNC-Greensboro.

1992 DNA fingerprinting in cranberry variety improvement, $1000, Ocean Spray

Cranberries, Inc. Partial matching funds from the Biology Dept., VPI & SU. C.N. Stewart, PI.

1992 Phenotypic plasticity in Vaccinium macrocarpon, the American cranberry, $500

Sigma Xi. Matching funds from the Biology Dept., VPI & SU. C.N. Stewart, PI. 1989 The significance of insectivory on sundew nutrient cycling, growth, and evolution,

$600, Sigma Xi. Matching funds from the Biology Dept., VPI & SU. C.N. Stewart, PI.

Publications Books 1. Stewart, C.N., Jr. 2003. (Ed.) Transgenic Plants: Current Innovations and Future Trends. Horizon Scientific Press. Wymondham, UK: 297 pp. 2. Stewart, C.N., Jr. 2004. Genetically Modified Planet: Environmental Impacts of Genetically Engineered Plants. Oxford University Press, New York: 240 pp.

Stewart, CV 28

3. Stewart, C.N., Jr. (Ed.) 2008. Plant Biotechnology and Genetics: Principles, Techniques and Applications, John Wiley & Sons, Hoboken, New Jersey: 374 pp. 4. Stewart, C.N., Jr. (Ed.) 2009. Weedy and Invasive Plant Genomics, Blackwell Publishing, Ames Iowa: 288 pp. 5. Stewart, C.N., Jr., A. Touraev, V. Citovsky, T. Tzfira (Eds). 2011. Plant Transformation Technologies. Wiley-Blackwell Scientific Publishing, Ames Iowa: 279 pp. 6. Stewart, C.N., Jr. 2011. Research Ethics for Scientists: A Companion for Students. Wiley-Blackwell Scientific Publishing, Chichester, UK: 210 pp. 7. Stewart, C.N., Jr. (Ed.) 2016 Plant Biotechnology and Genetics: Principles, Techniques and Applications, Second Edition, John Wiley & Sons, Hoboken, New Jersey: 406 pp. 8. National Academies of Sciences, Engineering, and Medicine (Committee on Genetically Engineered Crops). 2016. Genetically Engineered Crops: Experiences and Prospects. The National Academies Press, Washington, D.C. Journal Articles 1. Stewart, C.N., Jr., and E.T. Nilsen. 1992. Drosera rotundifolia growth and nutrition in a natural population with special reference to the significance of insectivory. Canadian Journal of Botany 70:1409-1416. 2. Stewart, C.N., Jr., and E.T. Nilsen. 1993. Association of edaphic factors and vegetation in several isolated Appalachian peat bogs. Bulletin of the Torrey Botanical Club 120:128-135. 3. Stewart, C.N., Jr., and E.T. Nilsen. 1993. Responses of Drosera capensis and D. binata var. multifida (Droseraceae) to manipulations of insect availability and soil nutrient levels. New Zealand Journal of Botany 31:385-390. 4. Stewart, C.N., Jr., and L.E. Via. 1993. A rapid CTAB DNA isolation technique useful for RAPD fingerprinting and other PCR applications. BioTechniques 14:748-751. 5. Parrott, W.A., J.N. All, M.J. Adang, M.A. Bailey, H.R. Boerma, and C.N. Stewart, Jr. 1994. Recovery and evaluation of soybean (Glycine max [L.] Merr.) plants transgenic for a Bacillus thuringiensis var. kurstaki insecticidal gene. In Vitro Cellular and Developmental Biology-Plant 30:144-149. 6. Stewart, C.N., Jr. 1994. A soybean DNA isolation procedure using fresh tissue. Soybean Genetics Newsletter 21:243-244.

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7. Stewart, C.N., Jr., and E.T. Nilsen. 1995. Phenotypic plasticity and genetic variation of Vaccinium macrocarpon (American cranberry) I. Reaction norms of clones from central and marginal populations in a common garden. International Journal of Plant Sciences 156:687-697. 8. Stewart, C.N., Jr., and E.T. Nilsen. 1995. Phenotypic plasticity and genetic variation of Vaccinium macrocarpon (American cranberry) II. Reaction norms and spatial clonal patterns in two marginal populations. International Journal of Plant Sciences 156:698-708. 9. Stewart, C.N., Jr. and D.M. Porter. 1995. RAPD profiling in biological conservation: an application to estimating clonal variation in rare and endangered Iliamna in Virginia. Biological Conservation 74:135-142. 10. Stewart, C.N., Jr. 1996. Monitoring transgenic plants with in vivo markers. Nature Biotechnology 14:682. 11. Stewart, C.N., Jr. 1996. Transgene flow and persistence may be monitored using in vivo markers such as GFP. Biosafety Volume 2, (BY96003), September 2nd 1996. http://www.bioline.org.br/request?by96003 12. Stewart, C.N., Jr., M.J. Adang, J.N. All, H.R. Boerma, G. Cardineau, D. Tucker, and W.A. Parrott. 1996. Genetic transformation, recovery, and characterization of transgenic soybean for synthetic Bacillus thuringiensis cryIAc. Plant Physiology 112:121-129. 13. Stewart, C.N., Jr., M.J. Adang, J.N. All, P.L Raymer, S. Ramachandran, and W.A. Parrott. 1996. Insect control and dosage effects in transgenic canola, Brassica napus L. (Brassicaceae), containing a synthetic Bacillus thuringiensis cryIAc gene. Plant Physiology 112:115-120. 14. Stewart, C.N., Jr., and L. Excoffier. 1996. Assessing population genetic structure and variability with RAPD data: application to the American cranberry. Journal of Evolutionary Biology 9:153-171. 15. Stewart, C.N., Jr., G. Rosson, B.W. Shirley, and D.M. Porter. 1996. Population genetic variation of rare and endangered Iliamna (Malvaceae) in Virginia. Biological Journal of the Linnean Society 58:357-369. 16. Stewart, C.N., Jr., J.N. All, P.L Raymer, S. Ramachandran. 1997. Increased fitness of transgenic insecticidal rapeseed under insect selection pressure. Molecular Ecology 6:773-779. 17. Leffel, S.M., S.A. Mabon, and C.N. Stewart, Jr. 1997. Applications of green fluorescent protein in plants. BioTechniques 23: 912-918 (with accompanying journal cover photo). 18. Stewart, C.N., Jr., and C.S. Prakash. 1998. Chloroplast-transgenic plants are not a gene flow panacea. Nature Biotechnology 16:401.

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19. Ramachandran, S., G.D. Buntin, J.N. All, P.L. Raymer, and C.N. Stewart, Jr. 1998. Movement and survival of diamondback moth, Plutella xylostella (Lepidoptera: Plutellidae) larvae in mixtures of non-transgenic and transgenic canola containing a Bacillus thuringiensis cryIA(c) gene. Environmental Entomology 27:649-656. 20. Ramachandran, S., G.D. Buntin, J.N. All, P.L. Raymer, and C.N. Stewart, Jr. 1998. Greenhouse and field evaluations of transgenic canola against diamondback moth, Plutella xylostella and corn earworm, Helicoverpa zea. Entomologia Experimentalis et Applicata 88:17-24. 21. Ramachandran, S., G.D. Buntin, J.N. All, B.E. Tabashnik, P.L. Raymer M.J. Adang, D.A. Pulliam, and C.N. Stewart, Jr. 1998. Survival, fitness, and oviposition of resistant diamondback moth (Lepidoptera: Plutellidae) on transgenic canola producing a Bacillus thuringiensis toxin. Journal of Economic Entomology 91:1239-1244. 22. Chamberlain, D. and C.N. Stewart, Jr., 1999. Transplastomics and transgene escape. Nature Biotechnology 17:330-331. 23. All, J., H.R. Boerma, W. Parrott, C.N. Stewart, Jr., P. Raymer, B. Rector, S. Ramachandran, D. Walker, and M. Treacy. 1999. Interactions in entomology: utilization and management of new genetic techniques for insect control in southern field crops. Journal of Entomological Science. 34:2-7. 24. Harper, B.K., S.A. Mabon, S.M. Leffel, M.D. Halfhill, H.A. Richards, K.A. Moyer, and C.N. Stewart, Jr. 1999. Green fluorescent protein in transgenic plants indicates the presence and expression of a second gene. Nature Biotechnology 17:1125-1129. 25. Ramachandran, S., G.D. Buntin, J.N. All, P.L. Raymer and C.N. Stewart, Jr. 2000. Intraspecific competition of an insect-resistant transgenic canola in seed mixtures. Agronomy Journal 92:368-374. 26. Harper, B.K., and C.N. Stewart, Jr. 2000. Patterns of green fluorescent protein in transgenic plants. Plant Molecular Biology Reporter 18: 141a-141i. 27. Stewart, C.N., Jr., H.A. Richards, M.D. Halfhill. 2000. Transgenic plants and biosafety: science, misconceptions and public perceptions. BioTechniques 29:832-843. 28. Stewart, C.N., Jr., and S.K. Wheaton. 2001. GM crop data—agronomy and ecology in tandem. Nature Biotechnology 19:3. 29. Pulliam, D.A., D.L. Williams, R.M. Broadway, and C.N. Stewart, Jr. 2001. Isolation and characterization of a serine proteinase inhibitor cDNA from cabbage and its antibiosis in

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transgenic tobacco plants. Plant Cell Biotechnology and Molecular Biology 2: 19-32. 30. Stewart, C.N., Jr. 2001. The utility of green fluorescent protein in transgenic plants. Plant Cell Reports 20:376-382.

31. Halfhill, M.D., H.A. Richards, S.A. Mabon, and C.N. Stewart, Jr. 2001. Expression of GFP and Bt transgenes in Brassica napus and hybridization with Brassica rapa. Theoretical and Applied Genetics 103:659–667. 32. Hudson, L.C., D. Chamberlain, and C.N. Stewart, Jr. 2001. GFP-tagged pollen to monitor gene flow of transgenic plants. Molecular Ecology Notes 1:321-324.

33. Halfhill, M.D., R.J. Millwood, P.L. Raymer, C.N. Stewart, Jr. 2002. Bt-transgenic oilseed rape hybridization with its weedy relative, Brassica rapa. Environmental Biosafety Research 1:19-28. 34. Tomlin, E.S., S.R. Branch, D. Chamberlain, H. Gabe, M.S. Wright, and C.N. Stewart, Jr. 2002. Screening of soybean, Glycine max (L.) Merrill, lines for somatic embryo induction and maturation capability from immature cotyledons. In Vitro Cellular and Developmental Biology-Plant 38:543-548. 35. Cardoza, V. and C. N. Stewart, Jr. 2003. Increased Agrobacterium-mediated transformation and rooting efficiencies in canola (Brassica napus L.) from hypocotyl segment explants. Plant Cell Reports 21: 599-604. 36. Millwood, R. J., M. D. Halfhill, D. Harkins, R. Russotti, and C. N. Stewart, Jr. 2003. Instrumentation and methodology for quantifying GFP fluorescence in intact plant organs. BioTechniques 34: 638-643. 37. Mueller, T.C., J. E. Massey, R.M. Hayes, C.L. Main, and C.N. Stewart, Jr. 2003. Shikimate accumulates in both glyphosate-sensitive and glyphosate-resistant horseweed (Conyza canadensis L. Cronq.) Journal of Agricultural and Food Chemistry 51:680-684. 38. Stewart, C.N., Jr. 2003. Press before paper—when media and science collide. Nature Biotechnology 21: 353-354. 39. Schuler, T.H., R.P.J. Potting, I. Denholm, S.J. Clark, A.J. Clark, C.N. Stewart and G.M. Poppy. 2003. Tritrophic choice experiments with Bt plants, the diamondback moth (Plutella xylostella) and the parasitoid Cotesia plutellae. Transgenic Research 12: 351-361. 40. Kooshki, M., A. Mentewab, and C.N. Stewart, Jr. 2003. Pathogen inducible reporting in transgenic tobacco using a GFP construct. Plant Science 165: 213-219.

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41. Richards, H.A., C.-T. Han, R.G. Hopkins, M.L. Failla, W.W. Ward, and C.N. Stewart, Jr. 2003. Safety assessment of green fluorescent protein orally administered to weaned rats. Journal of Nutrition. 133:1909-1912. 42. Warwick, S.I., M.J. Simard, A. Légère, L. Braun, H.J. Beckie, P. Mason, B. Zhu, and C.N. Stewart, Jr. 2003. Hybridization between Brassica napus L. and its wild relatives: B. rapa L., Raphanus raphanistrum L., Sinapis arvensis L., and Erucastrum gallicum (Willd.) O.E. Schulz. Theoretical and Applied Genetics 107:528-539. 43. Richards, H.A., M.D. Halfhill, R.J. Millwood, and C.N. Stewart, Jr. 2003. Quantitative GFP fluorescence as an indicator of recombinant protein synthesis in transgenic plants. Plant Cell Reports 22:117-121. 44. Halfhill, M.D., R.J. Millwood, A.K. Weissinger, S.I. Warwick, and C.N. Stewart, Jr. 2003. Additive transgene expression and genetic introgression in multiple GFP transgenic crop x weed hybrid generations. Theoretical and Applied Genetics 107:1533-1540. 45. Stewart, C.N., Jr. M.D. Halfhill and S.I. Warwick. 2003. Transgene introgression from genetically modified crops to their wild relatives. Nature Reviews Genetics 4: 806-817. 46. Halfhill, M.D., R.J. Millwood, T.W. Rufty, A.K. Weissinger, C.N. Stewart, Jr. 2003. Spatial and temporal patterns of green fluorescent protein (GFP) fluorescence during leaf canopy development in transgenic oilseed rape, Brassica napus L. Plant Cell Reports 22:338-343. 47. Mason, P, L. Braun, S. I. Warwick, B. Zhu, and C. N. Stewart, Jr. 2003. Transgenic Bt-producing Brassica napus: Plutella xylostella selection pressure and fitness of weedy relatives. Environmental Biosafety Research 2:263-276. 48. Zhu, B., J.R. Lawrence, S. Warwick, P. Mason, L. Braun, M. Halfhill, C.N. Stewart, Jr. 2004. Stable Bacillus thuringiensis (Bt) toxin content in interspecific F1 and BC populations of wild Brassica rapa after Bt gene transfer. Molecular Ecology 13:237-241. 49. Zhu, B., J.R. Lawrence, S. Warwick, P. Mason, L. Braun, M. Halfhill, C.N. Stewart, Jr. 2004. Inheritance of GFP-Bt transgenes from Brassica napus in backcrosses with three wild B. rapa accessions. Environmental Biosafety Research 3:45-54. 50. Schuler, T.H., I. Denholm, S.J. Clark, C.N. Stewart, and G.M. Poppy. 2004. Effects of Bt plants on the development and survival of the parasitoid Cotesia plutellae (Hymenoptera: Braconidae) in susceptible and Bt-resistant larvae of the diamondback moth, Plutella xylostella (Lepidoptera: Plutellidae). Journal of Insect Physiology 50:435-440. 51. Hudson, L.C. and C.N. Stewart, Jr. 2004. Effects of pollen-synthesized green fluorescent protein on pollen grain fitness. Sexual Plant Reproduction 17:49-53.

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52. Halfhill, M.D., B. Zhu, S.I. Warwick, P.L. Raymer, R.J. Millwood, A.K. Weissinger, C. N. Stewart, Jr. 2004 Hybridization and backcrossing between transgenic oilseed rape and two related weed species under field conditions. Environmental Biosafety Research 3:73-81. 53. Basu, C., M.D. Halfhill, T.C. Mueller, and C.N. Stewart, Jr. 2004. Weed genomics: new tools to understand weed biology. Trends in Plant Science 9:391-398 (with accompanying journal cover). 54. Saxena. D., C.N. Stewart, I. Altosaar, Q. Shu, G. Stotzky. 2004. Larvicidal Cry proteins from Bacillus thuringiensis are released in root exudates of transgenic B. thuringiensis corn potato and rice but not of B. thuringiensis canola, cotton, and tobacco. Plant Physiology and Biochemistry 42:383-387. 55. Cardoza, V. and C. N. Stewart, Jr. 2004. Brassica biotechnology: progress in cellular and molecular biology. In Vitro Cellular and Developmental Biology-Plant 40:542-551. 56. Patel, N., V. Cardoza, E. Christensen, B. Rekapalli, A. Mentewab and C. N. Stewart Jr. 2004. Differential gene expression of Chlamydomonas reinhardtii in response to 2,4,6-trinitrotoluene (TNT) using microarray analysis. Plant Science 167:1109-1122. 57. Mentewab, A., V. Cardoza and C. N. Stewart, Jr. 2005. Genomic analysis of the response of Arabidopsis thaliana to trinitrotoluene as revealed by cDNA microarrays. Plant Science 168:1409-1424. 58. Schuler, T.H., A.J. Clark, S.J. Clark, G.M. Poppy, C.N. Stewart, Jr. and I. Denholm. 2005. Laboratory studies of the effects of reduced prey choice caused by Bt plants on a predatory insect. Bulletin of Entomological Research 95:243-247. 59. Stewart, C.N., Jr. 2005. Monitoring the presence and expression of transgenes in living plants. Trends in Plant Science 10:390-396. 60. Halfhill, M.D., H.S. Moon, J.P Sutherland, G.M Poppy, S.I Warwick, T.W. Rufty, A.K. Weissinger, P.L. Raymer, and C.N. Stewart, Jr. 2005. Growth, productivity, and competitiveness of introgressed weedy Brassica rapa hybrids selected for the presence of Bt cry1Ac and gfp transgenes. Molecular Ecology 14: 3177-3189. 61. Mentewab, A. and C. N. Stewart, Jr. 2005. Overexpression of an Arabidopsis thaliana ABC transporter confers kanamycin resistance to transgenic plants. Nature Biotechnology 23:1177-1180. 62. Stewart, C.N., Jr., R.J. Millwood, M.D. Halfhill, M. Ayalew, V. Cardoza, M. Kooshki, G.A.Capelle, K.R. Kyle, D. Piaseki, G. McCrum, J. Di Benedetto. 2005. Laser-induced fluorescence imaging and spectroscopy of GFP transgenic plants. Journal of Fluorescence 15:

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697-705. 63. Stewart, C.N., Jr. 2005. Plant functional genomics: beyond the parts list. Trends in Plant Science 10:561-562. 64. Wei, W., T.H. Schuler, S.J. Clark, C.N. Stewart, Jr., and G. M. Poppy. 2005. Age-related increase in levels of insecticidal protein in the progenies of transgenic oilseed rape and its efficacy against a susceptible strain of diamondback moth. Annals of Applied Biology 147:227-235. 65. Markham, K., T. Chalk, and C.N. Stewart, Jr. 2006. Evaluation of protein-based defenses against phytophagous insects in ferns and mosses. International Journal of Plant Science 167:111-117. 66. Yuan, J.S., A. Reed, F. Chen, C.N. Stewart, Jr. 2006. Statistical analysis of real-time PCR data. BMC Bioinformatics 7:85 (highly accessed). 67. Stewart, C.N., Jr. 2006. Go with the glow: fluorescent proteins to light transgenic organisms. Trends in Biotechnology 24:155-162 (with accompanying journal cover). 68. Ferry, N., E.A. Mulligan, C.N. Stewart, B.E. Tabashnik, G.R. Port, and A.M.R. Gatehouse. 2006. Prey-mediated effects of transgenic canola on a beneficial, non-target, carabid beetle. Transgenic Research 15:501-514. 69. Shen, B, C. N. Stewart, Jr.Y. Le, M. Zhang, Z. Tang, X. Mi, W. Wei, K. Ma. 2006 Correlated expression of gfp and Bt cry1Ac gene facilitates quantification of transgenic hybridization between Brassicas. Plant Biology 8:723-730. 70. Moon. H.S., L. Hudson, M.D. Halfhill, R.J. Millwood, and C.N. Stewart, Jr. 2006. Expression of green fluorescent protein (GFP) in pollen of oilseed rape (Brassica napus L.) and its utility for assessing pollen movement in the field. Biotechnology Journal 1:1147-1152. 71. Halfhill, M.D., L.L. Good, C. Basu, J. Burris, C.L. Main, T.C. Mueller, and C. N. Stewart, Jr. 2007. Transformation and segregation of GFP fluorescence and glyphosate resistance in horseweed (Conyza canadensis) hybrids. Plant Cell Reports.26: 303-311. 72. Stewart, C.N., Jr. 2007. Biofuels and biocontainment. Nature Biotechnology 25:283-284. 73. Darbani, B., A. Eimanifar, C, N. Stewart, Jr., W. Camargo. 2007. Methods to produce marker-free transgenic plants. Biotechnology Journal 2:83-90. 74. Yuan, J.S., P.J. Tranel, and C.N. Stewart, Jr. 2007. Non-target site herbicide resistance: a family business. Trends in Plant Science 12:6-13.

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75. Luo, K., H. Duan, D. Zhao, X. Zheng, W. Deng, Y. Chen, C.N. Stewart, Jr., Y. Wu, X. Jiang, A. He, R. McAvoy, Y. Pei, and Y. Li. 2007. “GM-gene-deletor”: fused loxP-FRT recognition sequences dramatically improves efficiency of FLP or Cre recombinase on transgene excision from pollen and seed of tobacco plants. Plant Biotechnology Journal 5:263-274. 76. Moon. H.S., M.D. Halfhill, L.L. Good, P.L. Raymer and C.N. Stewart, Jr. 2007. Characterization of directly transformed weedy Brassica rapa and introgressed B. rapa with Bt cry1Ac and gfp genes. Plant Cell Reports 26:1001-1010. 77. Panthee, D.R.., J.S. Yuan, D.L. Wright, J.J. Marois, D. Mailhot and C.N. Stewart Jr. 2007. Gene expression analysis in soybean in response to the causal agent of Asian soybean rust (Phakopsora pachyrhizi Sydow) in an early growth stage. Functional and Integrative Genomics 7: 291-301. 78. Le, Y.-T., Stewart, C. N., Jr., H. Shi, W. Wei, X.-C. Mi, K.-P.Ma. 2007. Expression of Bt cry1Ac in transgenic oilseed rape in China and transgenic performance of intraspecific hybrids against Helicoverpa armigera larvae. Annals of Applied Biology 150: 141-147. 79. Darbani, B., C.N. Stewart, Jr., A. Razban, and S. Noeparvar. 2007. Coat protein gene sequence analysis of PVX & PVY: conserved regions to design a gene silencing cassette. Pakistan Journal of Biological Sciences 10: 3330-3340. 80. Yuan, J.S. J. Burris, N.R. Stewart, A. Mentewab, C. N. Stewart Jr. 2007. Statistical tools for transgene copy number estimation based on real-time PCR. BMC Bioinformatics. 8(Suppl 2):S6 doi:10.1186/1471-2105-8-S7-S6; http://www.biomedcentral.com/1471-2105/8/S7/S6 (highly accessed). 81. Darbani, B., M. Toorchi, S. Farajnia, S.A. Mohammadi, and C.N. Stewart, Jr. 2007. K26 antigen from L infantum Mon1: sequence-based function-localization analysis. Pakistan Journal of Medical Science 37: 251-253. 82. Yancey, A. and C. N. Stewart, Jr. 2007. Are university researchers at risk for patent infringement? Nature Biotechnology 25:1225-1228. 83. Himanen, S., A. Nissinen, S. Auriola G.M. Poppy, C.N. Stewart, Jr., J.K. Holopainen, and A.-M. Nerg. 2008. Constitutive and herbivore-inducible glucosinolate concentrations of oilseed rape (Brassica napus) leaves are not affected by Bt Cry1Ac insertion but change under elevated atmospheric CO2 and O3. Planta 227: 427-437. 84. Yuan, J.S., D. W. Galbraith, S.Y. Dai, P. Griffin, and C.N. Stewart, Jr. 2008. Plant systems biology comes of age. Trends in Plant Science 13: 165-171.

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85. Mazarei, M., H. Al-Ahmad, M.R. Rudis, C.N. Stewart, Jr. 2008. Protoplast isolation and transient gene expression in switchgrass, Panicum virgatum L. Biotechnology Journal 3: 354-359. 86. Yuan, J., D. Wang, and C.N. Stewart, Jr. 2008. Statistical methods for efficiency adjusted real-time PCR analysis. Biotechnology Journal 3:112-123. 87. Wei, W, T.H. Schuler, S.J. Clark, C.N. Stewart, Jr. and G.M. Poppy. 2008. Movement of transgenic plant-expressed Bt Cry1Ac proteins through high trophic levels. Journal of Applied Entomology 132: 1-11. 88. Stewart, C.N., Jr. and L.E. Edwards. 2008. How to teach research ethics. The Scientist 22(6): 27. 89. Burris, K., A. Mentewab, S. Ripp, and C.N. Stewart, Jr. 2008. An Arabidopsis thaliana ABC transporter that confers kanamycin resistance in transgenic plants does not endow resistance to Escherichia coli. Microbial Biotechnology 1:191-195. 90. Mazarei, M., I. Teplova, M. R. Hajimorad and C. N. Stewart, Jr. 2008. Pathogen phytosensing: plants to report plant pathogens, Sensors 8: 2628-2641. 91. Darbani, B., C.N. Stewart, Jr., and S. Noeparvar. 2008. DNA delivery methods to produce transgenic plants. Turkish Journal of Biology 7: 385-402. 92. Yuan, J.S., K.H. Tiller, H. Al-Ahmad, N.R. Stewart, C.N. Stewart, Jr. 2008. Plants to power: bioenergy to fuel the future. Trends in Plant Science 13: 421-429. 93. Himanen, S., A. Nissinen, W.-X. Dong, A.-M. Nerg, C.N. Stewart, Jr., G.M. Poppy, and J.K. Holopainen. 2008. Interactions of elevated carbon dioxide and temperature with aphid feeding on transgenic oilseed rape: Are Bacillus thuringiensis (Bt) plants more susceptible to nontarget herbivores in future climate? Global Change Biology 14: 1437-1454. 94. Abercrombie, J.M., M.D. Halfhill, P. Ranjan, M.R. Rao, A. Saxton, J.S. Yuan, and C.N. Stewart, Jr. 2008. Transcriptional responses of Arabidopsis thaliana to As(V) stress. BMC Plant Biology 8: 87 (http://www.biomedcentral.com/1471-2229/8/87). 95. Darbani, B., S. Farajnia, S. Noeparvar, C. N. Stewart, Jr., S.A. Mohammadi, S. Zakerbastanabad. 2008. Plant transformation: needs and future of transgenes. Biotechnology 7: 403-412. 96. Stewart, C.N., Jr. 2008. Pharming in crop communities. Nature Biotechnology 26:1222-1223. 97. Himanen, S., A.-M. Nerg A. Nissinen, D. M. Pinto, C.N. Stewart, Jr., G.M. Poppy, and J.K.

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Holopainen, 2009. Effects of elevated carbon dioxide and ozone on volatile terpenoid emissions and multitrophic communication of transgenic insecticidal oilseed rape (Brassica napus). New Phytologist 181: 174-186. 98. Panthee, D.R.., J.J. Marois, D.L. Wright, D. Narváez, J.S. Yuan, and C.N. Stewart Jr. 2009. Differential expression of genes in soybean in response to the causal agent of Asian soybean rust, (Phakopsora pachyrhizi Sydow), is soybean growth stage-specific. Theoretical and Applied Genetics 118: 359-370. 99. Himanen S.J., A.M. Nerg, A. Nissinen, C.N. Stewart, Jr., G.M. Poppy and J.K. Holopainen. 2009. Elevated atmospheric ozone increases concentration of insecticidal Bacillus thuringiensis (Bt) Cry1Ac protein concentrations in Bt Brassica napus and reduces feeding of a Bt target herbivore on the non-transgenic parent. Environmental Pollution 157: 181-185. 100. Yuan, J.S., S. Himanen, J.K. Holopainen, F. Chen, and C.N. Stewart, Jr. 2009. Smelling climate change: plant volatile organic compounds in changing environments. Trends in Ecology and Evolution 24: 323-331. 101. Di, K., C.N. Stewart, Jr., W. Wei, B. Shen, Z.-X. Tang, K.-P. Ma. 2009. Fitness and maternal effects in hybrids formed between transgenic oilseed rape (Brassica napus L.) and wild brown mustard [B. juncea (L.) Czern et. Coss.] in the field. Pest Management Science 65:753-760. 102. Stewart, C.N., Jr., P.J. Tranel, D.P. Horvath, J.V. Anderson, L.H. Rieseberg, J.H. Westwood, C.A. Mallory-Smith, M.L. Zapiola, K.M. Dlugosch. 2009. Evolution of weediness and invasiveness: charting the course for weed genomics. Weed Science 57: 451-462.

103. Abercrombie, L.G. and 101 other authors. 2009. Permanent genetic resources added to Molecular Ecology Resources database 1 January 2009- 30 April 2009 Molecular Ecology Resources 9: 1375-1379.

104. Cutulle, M.A., J.S. McElroy, R.W. Millwood, J.C. Sorochan, C.N. Stewart, Jr. 2009. Selection of bioassay method influences detection of annual bluegrass resistance to mitotic-inhibiting herbicides. Crop Science. 49: 1088-1095. 105. Rao, M.R., M.D. Halfhill, L.G Abercrombie, P. Ranjan, J.M. Abercrombie, J.S. Gouffon, A.M. Saxton, and C.N. Stewart, Jr. 2009. Phytoremediation and phytosensing of chemical contaminants, RDX and TNT: identification of the required target genes. Functional and Integrative Genomics 9:537-547. 106. Stewart, C.N., Jr. and T. Tschaplinski. 2009. Session 1: Advances in bioenergy feedstocks and plant science. Applied Biochemistry and Biotechnology 153: 1-3.

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107. Zhou, X., Z. Su, R.D. Sammons, Y. Peng, P.J. Tranel, C.N. Stewart, Jr., J.S. Yuan. 2009. Novel software package for cross-platform transcriptome analysis (CPTRA). BMC Bioinformatics 10 (Suppl 11): S16 http://www.biomedcentral.com/qc/1471-2105/10/S11/S16/ 108. Xu, Z, D. Zhang, J. Hu, X. Zhou, X. Ye, K.L. Reichel, N.R. Stewart, R.D. Syrenne, X. Yang, P. Gao, W. Shi, C. Doeppke, R. W. Sykes, J.N. Burris, J. Bozell, Max Z.-M.. Cheng, D.G. Hayes, N. Labbe, M. Davis, C.N. Stewart, Jr., J.S. Yuan. 2009. Comparative genome analysis of lignin biosynthesis gene families across the plant kingdom. BMC Bioinformatics 10 (Suppl 11): S3 http://www.biomedcentral.com/1471-2105/10/S11/S3 (highly accessed). 109. Chen, F., H. Al-Ahmad, B. Joyce, N. Zhao, T. G. Köllner, J. Degenhardt, C. N. Stewart, Jr. 2009. Within-plant distribution and emission of sesquiterpenes from Copaifera officinalis. Plant Physiology and Biochemistry, 47: 1017-1023. 110. Rose, C.W., R.J. Millwood, H.S. Moon, M.R. Rao, M.D. Halfhill, P.L. Raymer, S.I. Warwick, H. Al-Ahmad, J. Gressel, and C.N. Stewart, Jr. 2009. Genetic load and transgenic mitigating genes in transgenic Brassica rapa (field mustard) × Brassica napus (oilseed rape) hybrid populations. BMC Biotechnology 9: 93 http://www.biomedcentral.com/1472-6750/9/93/ 111. Mann, D.J.G., N. Labbé, R. Sykes, K. Reichel, L. Kline, I.M. Swamidoss, J.N. Burris, M. Davis, C.N. Stewart, Jr. 2009. Rapid assessment of lignin content and structure in switchgrass (Panicum virgatum L.) grown under different environmental conditions. BioEnergy Research 2: 246-256. 112. Burris, J.N., D.J.G. Mann, B.L. Joyce, C.N. Stewart, Jr. 2009. An improved tissue culture system for embyrogenic callus production and plant regeneration in switchgrass (Panicum virgatum L.). BioEnergy Research 2: 267-274. 113. Stewart, C.N., Jr., L. Shugart, G.-S. Liu, J. Zhuang, Y. Ma, G.A. Tuskan, R. Meilan, R.W. Gentry, G.S. Sayler. 2010. China-U.S. workshop on biotechnology of bioenergy plants. Ecotoxicology 19: 1-3. 114. Moon, H.S., Y. Li., C.N. Stewart, Jr. 2010. Keeping the genie in the bottle: transgene biocontainment by excision in pollen. Trends in Biotechnology, 28: 3-8.(with accompanying journal cover)

115. Moon, H.S., J.M. Abercrombie, A.P. Kausch, C.N Stewart, Jr. 2010. Sustainable use of biotechnology for bioenergy feedstocks. Environmental Management 46:531-538. 116. Himanen, S.J., A.-M. Nerg, G.M. Poppy, C.N. Stewart, Jr., J.K. Holopainen. 2010. Abiotic stress and transgenics: implications for reproductive success and crop-wild gene flow in Brassicas. Basic and Applied Ecology 11: 513-521.

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117. Yuan, J.S., L.G. Abercrombie, Y. Cao, M.D. Halfhill, X. Zhou, Y. Peng, J. Hu, M.R. Rao, G.R. Heck, T.J. Larosa, R. D. Sammons, R. N. Trigiano, X. Wang, P. Ranjan, D. H. Johnson, P. A. Wadl, B.E. Scheffler, T.A Rinehart, R.N. Trigiano, C. N. Stewart, Jr. 2010. Functional genomics analysis of horseweed (Conyza canadensis) with special reference to the evolution of non-target-site glyphosate resistance. Weed Science. 58: 109-117. 118. Kausch, A.P., J. Hague, M. Oliver, Y. Li. H. Daniell, P. Maschia, L.S. Watrud, and C.N. Stewart, Jr. 2010. Transgenic biofuel feedstocks and strategies for bioconfinement. Biofuels 1:163-176. 119. Kang, B-g., X. Ye, L.D. Osburn, C.N. Stewart, Jr., Z-M. Cheng. 2010. Transgenic hybrid aspen overexpressing the Atwbc19 gene encoding an ATP binding cassette transporter confers resistance to four aminoglycoside antibiotics. Plant Cell Reports 29:643-650. 120. Yancey, A., C. N. Stewart, Jr. 2010. Patent reform in the US: What’s at stake for the pharmaceutical industry? Expert Opinion on Therapeutic Patents 5:603-608. 120a. Yancey, A., C. N. Stewart, Jr. 2010. Patent reform in the US: What’s at stake for the pharmaceutical industry? Reprinted in Intellectual Property Magazine, August 2010, pp 26-29. 121. Peng, Y., L.L.G. Abercrombie, J.S. Yuan, C.W. Riggins, R.D. Sammons, P.J. Tranel, and C.N. Stewart, Jr. 2010. Characterization of the horseweed Conyza canadensis transcriptome using GS-FLX 454 pyrosequencing and its application for expression analysis of candidate non-target herbicide-resistance genes. Pest Management Science 66: 1053-1062. 122. Riggins, C.W., Y. Peng, C. N. Stewart, Jr., and P. J. Tranel. 2010. Characterization of de novo waterhemp (Amaranthus tuberculatus) transcriptome using GS-FLX 454 pyrosequencing and its application for studies of herbicide target-site genes. Pest Management Science 66: 1042-1052. 123. Gajoti, T.E., V. Haciyev, A Javanshir, H. Nosrati, A.R. Haghighi, A. Eimanifar, C. N. Stewart, Jr. 2010. Vegetation analysis in Sutan-Chay basin in Arasbaran. American Journal of Agricultural and Biological Sciences 5:357-362. 124. Rao, M.R., H.S. Moon, T.M.H. Schenk, D. Becker, M. Mazarei and C.N. Stewart Jr. 2010. FLP/FRT recombination from yeast: application of a two gene cassette scheme as an inducible system in plants. Sensors 10: 8526-8535; doi:10.3390/s100908526. 125. Xia L., S.C. Lenaghan, M. Zhang, Y. Wu, X. Zhao, J. N. Burris, C. N. Stewart, Jr. 2011. Characterization of English ivy (Hedera helix) adhesion force and imaging using atomic force microscopy. Journal of Nanoparticle Research 13:1029-1037. 126. Burris, K.P., P. M. Davidson, C.N. Stewart, Jr. and F. M. Harte. 2011 Antimicrobial activity

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of Yerba Mate (Ilex paraguariensis) aqueous extracts against Escherichia coli O157:H7 and Staphylococcus aureus. Journal of Food Science 76: M456-M462. 127. Vasudev, M., T.-C. Wu, M. Datta, M.A. Stroscio, S. Guthrie, M. Reed, K.P. Burris, C. N. Stewart, Jr. 2011. Optoelectric signatures of DNA-based hybrid nanostructures. IEEE Transactions on Nanotechnology 10: 35-43. 128. Jiang, H., W. Wei, X. Song, C.N. Stewart, Jr., G. Zhou, Z. Jiang. Q Zhu, S. Yu, S. Peng, 2011. Hyperspectral studies of transgenic oilseed rape. International Journal of Remote Sensing 32: 1095-1103.

129. Abercrombie, J.M., M. Stewart, M.R. Rao, M.E. Essington, and C.N. Stewart, Jr. 2011. Aluminum accumulation in Pteris cretica and heavy metal uptake in vegetation growing on an abandoned aluminum smelter site in Knoxville, TN USA. International Journal of Environment and Pollution. 45: 310-326. 130. Moon, H.S., S. Eda, A.M. Saxton, D. Ow, C.N. Stewart, Jr. 2011. An efficient and rapid transgenic pollen screening and detection method using flow cytometry. Biotechnology Journal 6:118-123. 131. Leckie, B.L., C.N. Stewart, Jr. 2011. Agroinfiltration as a technique for rapid assays for expressing candidate insect resistance transgenes in plants. Plant Cell Reports 30:325-334. 132. Lei, L., C.N. Stewart, Jr, Z-X. Tang, and W. Wei. 2011. Dynamic expression of green fluorescent protein and Bacillus thuringiensis Cry1Ac endotoxin in interspecific hybrids and successive backcross generations (BC1 and BC2) between transgenic Brassica napus crop and wild Brassica juncea. Annals of Applied Biology 159: 212-219. 133. Mazarei, M. W. Liu, H. Al-Ahmad, P.R. Arelli, V.R. Pantalone, C.N. Stewart, Jr. 2011. Gene expression profiling of resistant and susceptible soybean lines infected with soybean cyst nematode. Theoretical and Applied Genetics 123: 1193-1206. 134. Mazarei, M., H. Al-Ahmad, M.R. Rudis, B. L. Joyce, C.N. Stewart, Jr. 2011. Switchgrass (Panicum virgatum L.) cell suspension cultures: establishment, characterization, and application. Plant Science 6: 712-715. 135. Moon, H.S., L.L. Abercrombie, S. Eda, R. Blanvillain, J.G. Thomson, D.W. Ow, C.N. Stewart, Jr. 2011. Transgene excision in pollen using a codon optimized serine resolvase CinH-RS2 site-specific recombination system. Plant Molecular Biology 75:621-631. 136. Kwit, C. H.S. Moon, S.I. Warwick, C.N. Stewart, Jr. 2011. Transgene introgression in crop relatives: molecular evidence and mitigation strategies. Trends in Biotechnology 29: 284-293.

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137. Mann, D.J.G., Z. R. King, W. Liu, B.L. Joyce, R.J. Percifield, J.S. Hawkins, P.R. LaFayette, B.J. Artelt, J.N. Burris, M. Mazarei, J.L. Bennetzen, W.A. Parrott, C.N. Stewart, Jr. 2011. Switchgrass (Panicum virgatum L.) polyubiquitin gene (PvUbi1 and PvUbi2) promoters for use in plant transformation. BMC Biotechnology 11:74 http://www.biomedcentral.com/1472-6750/11/74/ (highly accessed). 138. Salgotra, R.K., R. J. Millwood, S. Agarwal, C. N. Stewart, Jr, 2011. High-throughput functional marker assay for detection of Xa/xa and fgr genes in rice (Oryza sativa L.). Electrophoresis 32: 2216-2222. 139. Stewart, C.N., Jr. and G.-S. Liu. 2011. Bioenergy plants in the United States and China. Plant Science 181: 621-622. 140. Yuan, J.S., Y. Qu, S. Li, and C.N. Stewart Jr. 2011. US-China collaborative biofuel research: towards a global solution for petroleum replacement. Biofuels 2:487-489. 141. Yuan, J.S., X. Wang, and C.N. Stewart Jr. 2011. Biomass feedstock: diversity as a solution. Biofuels 2: 491-493. 142. Darbani, B., S. Farajnia, M. Toorchi, S. Zakerbostanabad, S. Neopavar, C.N. Stewart, Jr. 2011. DNA-delivery methods to produce transgenic plants. Biotechnology 10: 323-340. 143. Liu, W., M. Mazarei, M.R. Rudis, M.H. Fethe, and C.N. Stewart, Jr. 2011. Rapid in vivo analysis of synthetic promoters for pathogen phytosensing. BMC Biotechnology, 11:108 http://www.biomedcentral.com/1472-6750/11/108 144. Shen, H., X. He, C.R. Poovaiah, W.A. Wuddineh, J. Ma, D.G.J. Mann, H. Wang, L. Jackson, Y. Tang, C.N. Stewart, Jr., F. Chen, and R.A. Dixon. 2012. Functional characterization of the switchgrass (Panicum virgatum) R2R3-MYB transcription factor PvMYB4 for improvement of lignocellulosic feedstocks. New Phytologist 193: 121-136. 145. Mann, D.G.J., P.R. LaFayette, L. L. Abercrombie, Z.R. King, M. Mazarei, M.C. Halter, C.R. Poovaiah, H. Baxter, H. Shen, R.A. Dixon, W.A. Parrott, C.N. Stewart, Jr. 2012. Gateway-compatible vectors for high-throughput gene functional analysis in switchgrass (Panicum virgatum L.) and other monocot species. Plant Biotechnology Journal 10:226-236. 146. Joyce, B. and C.N. Stewart, Jr. 2012. Designing the perfect plant feedstock for biofuel production: using the whole buffalo to diversify fuel and products. Biotechnology Advances 30: 1011-1022. 147. Kwit, C. and C.N. Stewart, Jr. 2012. Gene flow matters in switchgrass (Panicum virgatum L.), a potential widespread biofuel feedstock. Ecological Applications 22: 3-7.

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148. Resnick, D.B., and C.N. Stewart, Jr. 2012. Misconduct versus honest error and scientific disagreement. Accountability in Research 19:56-63. 149. Fu, C., R. Sunkar, C. Zhou, H. Shen, J. Zhang, J. Wolf, Y. Tang, D. G.J. Mann, C. N. Stewart, Jr., M. Udvardi, R. A. Dixon, and Z.-Y. Wang. 2012. Overexpression of miR156 in switchgrass (Panicum virgatum L.) results in various morphological alterations and leads to improved biomass production. Plant Biotechnology Journal 10:443-452. 150. Salgotra, R.K. B.B. Gupta, R.J. Millwood, M. Balasubramaniam, and C.N Stewart, Jr. 2012. Introgression of bacterial leaf blight resistance and aroma genes using functional marker-assisted selection in rice (Oryza sativa L.). Euphytica 187: 313-323. 151. Burris, K.P., P.M Davidson, C.N. Stewart, Jr., S. Zivanovic, F.M. Harte. 2012. Aqueous extracts of yerbe mate (Ilex paraguariensis) as a natural antimicrobial agent against Escherichia coli O157:H7 in a microbiological medium and pH 6.0 apple juice. Journal of Food Protection 75: 753-757. 152. Burris, K.P., and C.N Stewart, Jr. 2012. Fluorescent nanoparticles: sensing pathogens and toxins in foods and crops. Trends in Food Science and Technology 28:143-152. 153. Liu, Y., Z. Tang, H. Darmency, C. N. Stewart, Jr., K. Di, W. Wei, K. Ma. 2012. The effects of seed size on hybrids formed between oilseed rape (Brassica napus) and wild brown mustard (Brassica juncea). PLoS One 7(6): e39705 154. Sun, G., C.N. Stewart, Jr., P. Xiao, B. Zhang. 2012. MicroRNA expression analysis in the cellulosic biofuel crop switchgrass (Panicum virgatum) under abiotic stress. PLoS One 7(3): e32017. http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0032017 155. Burris, K.P., F.M. Harte, P.M Davidson, C.N. Stewart, Jr., S. Zivanovic. 2012. Composition and bioactive properties of Yerbe Mate (Ilex paraguariensis A. St.-Hil.): a review. Chilean Journal of Agricultural Research 72: 268-274. 156. Zhao, N., J.-L. Ferrer, H.S. Moon, J. Kapteyn, X. Zhuang, M. Hasebe, C.N. Stewart Jr., D.R. Gang, and F. Chen. 2012. A SABATH methyltransferase from the moss Physcomitrella patens catalyzes S-methylation of thiols and has a role in detoxification. Phytochemistry 81: 31-41. 157. Mann, D.G.J., L.L. Abercrombie, M.R. Rudis, R.J. Millwood, J.R. Dunlap, C.N. Stewart, Jr. 2012. Very bright orange fluorescent plants: endoplasmic reticulum targeting of orange fluorescent proteins as visual reporters in transgenic plants. BMC Biotechnology 12: 17. 158. Johnson, MTJ, Z Tian, EJ Carpenter, R Bruskiewich, JN Burris, CT Carrigan, MW Chase, ND Clarke, S Covshoff, CW dePamphilis, PP Edger, F Goh, S Graham, S Greiner, JM Hibberd, I

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Jordon-Thaden, TM Kutchan, J Leebens-Mack, M Melkonian, N Miles, H Myburg, JC Pires, M Rolf, RF Sage, D Soltis, P Soltis, D Stevenson, CN Stewart, Jr, B.Surek, CJM Thomsen, JC Villarreal, X Wu, Y Zhang, MK Deyholos & GK-S Wong. 2012. Evaluating methods of isolating total RNA and predicting the success of sequencing phylogenetically diverse plant transcriptomes. PLoS ONE 7(11):e50226. http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0050226 159. Burris, J.N., S. Lenaghan, M.J. Zhang, C.N. Stewart, Jr. 2012. Nanoparticle biofabrication using English ivy (Hedera helix). Journal of Nanobiotechnology 10:41. http://www.jnanobiotechnology.com/content/10/1/41 160. Liu, W., M. Mazarei, M.R. Rudis, M.H. Fethe, Y. Peng, R.J. Millwood, G. Schoene, J.N. Burris and C.N. Stewart, Jr. 2013. Bacterial pathogen phytosensing in transgenic tobacco and Arabidopsis plants. Plant Biotechnology Journal 11:43-52. 161. Nageswara-Rao, M., C.N. Stewart, Jr., C. Kwit. 2013. Genetic diversity and structure of natural and agronomic switchgrass (Panicum virgatum L.) populations. Genetic Resources and Crop Evolution 60: 1057-1068. 162. Yi, S., L. Xia, S.C. Lenaghan, L. Sun, Y. Huang, J.N. Burris, C.N. Stewart, Jr., and M.J. Zhang. 2013. Biosynthesis of gold nanoparticles using English ivy (Hedera helix). Journal of Nanoscience and Nanotechnology 13:1649-1659. 163. Lenaghan, S.C., Y. Li, H. Zhang, J.N. Burris, C.N. Stewart, Jr., L.E. Parker, and M.J. Zhang. 2013. Monitoring the environmental impact of TiO2 nanoparticles using a plant-based sensor-network. IEEE Transactions on Nanotoxicology 12: 182-189. 164. Hardin, C.F. C. Fu, H. Hisano, X. Xaio, H. Shen, C.N. Stewart, Jr., W. Parrott, R.A. Dixon, Z-Y. Wang. 2013. Standardization of switchgrass sample collection for cell wall and biomass trait analysis. BioEnergy Research 6: 755-762. http://link.springer.com/content/pdf/10.1007%2Fs12155-012-9292-1.pdf 165. Huang, Y., S.C. Lenaghan, L. Xia, Z. Xu, J.N. Burris, C.N. Stewart Jr., M.J. Zhang. 2013. Characterization of physicochemical properties of ivy nanoparticles for cosmetic applications. Journal of Nanobiotechnology 11:3. http://www.jnanobiotechnology.com/content/11/1/3 166. Okada, M., B.D. Hanson, K.J. Hembree, W.T. Lanini, Y. Peng, A. Shrestha, C.N. Stewart, Jr., S.D. Wright, and M. Jasieniuk. 2013. Evolution and spread of glyphosate resistance in Conyza canadensis in California. Evolutionary Applications 6: 761-777. 167. Yau, Y.Y. and C.N. Stewart, Jr. 2013. Less is more: strategies to remove marker genes from transgenic plants. BMC Biotechnology 13:36. http://www.biomedcentral.com/1472-6750/13/36 168. Shen, H., C. R. Poovaiah, A. Ziebell, T.J. Tschaplinski, S. Pattathil, E. Gjersing, N. Engle,

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R. Katahira, Y. Pu, R. Sykes, F. Chen, A.J. Ragauskas, J.R. Mielenz, M.G. Hahn, M. Davis, C.N. Stewart, Jr., R.A. Dixon. 2013. Enhanced characteristics of genetically modified switchgrass (Panicum virgatum L.) for high biofuel production. Biotechnology for Biofuels 6:71. http://www.biotechnologyforbiofuels.com/content/6/1/71/abstract 169. Sang, Y., R.J. Millwood, C.N. Stewart Jr. 2013 Gene use restriction technologies for transgenic plant bioconfinement. Plant Biotechnology Journal 11:649-658. 170. Nagaswara-Rao, M., J. Soneji, C. Kwit, C.N. Stewart, Jr. 2013. Advances in biotechnology and genomics of switchgrass. Biotechnology for Biofuels 6:77. http://www.biotechnologyforbiofuels.com/content/6/1/77/abstract 171. Rice, J.H., R.E. Mundell, R.J. Millwood, O.D. Chambers, C.N. Stewart. Jr., H.M. Davies, 2013. Assessing the bioconfinement potential of a Nicotiana hybrid platform for use in plant molecular farming applications. BMC Biotechnology 13:63. http://www.biomedcentral.com/1472-6750/13/63 172. Lenaghan, S., J.N. Burris, K. Chourey, Y. Huang, L. Xia, B. Lady, R. Sharma, C. Pan, Z. LeJeune, S. Foister, R.L. Hettich, C.N. Stewart, Jr. and M. Zhang. 2013. Identification of the chemical nature of nanoparticles secreted by English ivy (Hedera helix). Journal of the Royal Society Interface 10 (87): 20130392. 173. Burris, K.P., T-C. Wu, M. Vasudev, M.A. Stroscio, R.J. Millwood, and C.N. Stewart, Jr., 2013. Mega-nano detection of foodborne pathogens and transgenes using molecular beacon and semiconductor quantum dot technologies. IEEE Transactions in NanoBioscience 12: 233-238. 174. Nageswara-Rao, M., C. Kwit, S. Agarwal, M.T. Patton, J.A. Skeen, J.S. Yuan, R.M. Manshardt. C.N. Stewart Jr. 2013. Sensitivity of a real-time PCR method for the detection of transgenes in a mixture of transgenic and non-transgenic seeds of papaya (Carica papaya L.) BMC Biotechnology 13:69. http://www.biomedcentral.com/1472-6750/13/69 175. Muthukumar, B., B.L. Joyce, M.P. Elless, C.N. Stewart Jr. 2013.Stable transformation of ferns using spores as targets: Pteris vittata and Ceratopteris thalictroides. Plant Physiology 163: 648-658. 176. Rice, J.H., R.E. Mundell, R.J. Millwood, O.D. Chambers, L.G. Abercrombie, H.M. Davies, and C.N. Stewart, Jr. 2013. An orange fluorescent protein tagging system for real-time pollen tracking. BMC Research Notes 6:383. http://www.biomedcentral.com/1756-0500/6/383/abstract 177. Yau, Y.Y. M. Easterling, C.N. Stewart, Jr. 2013. Precise transgene stacking in planta through the combined use of TALENs and uni-directional site-specific recombination systems OA Biotechnology 2(3): 24.

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178. Baxter, H.L. and C.N. Stewart, Jr. 2013. Effects of altered lignin biosynthesis on phenylpropanoid metabolism and plant stress. Biofuels 4: 635-650. 179. Liu, W., J.S. Yuan and C.N. Stewart, Jr. 2013. Advanced genetic tools for plant biotechnology. Nature Reviews Genetics 14: 781-793. 180. Lin, J. M. Mazarei, N. Zhao, J.J. Zhu, X Zhaung, W. Liu., V.R. Pantalone, P.R. Arelli, C. N. Stewart, Jr., F. Chen. 2013. Overexpression of a soybean salicyclic acid methlyltransferase confers resistance to soybean cyst nematode. Plant Biotechnology Journal 11: 1135-1145. 181. Ellstrand, N.C., P. Meirmans, J. Rong, D. Bartsch, A. Ghosh, T.J. de Jong, P. Haccou, B.-R. Lu, A.A. Snow, C.N. Stewart, Jr., J.L. Strasburg, P.H. van Tienderen, K. Vrieling, D. Hooftman. 2013. Introgression of crop alleles into wild or weedy populations. Annual Review of Ecology, Evolution, and Systematics 44: 325-345. 182. Shen H., M. Mazarei, H. Hisano, F. Hardin, L.L. Escamilla-Treviño, C. Fu, Y. Pu, M.R. Rudis, Y. Tang, X. Xiao, L. Jackson, G. Li, T. Hernandez, F. Chen, A.J. Ragauskas, C.N. Stewart Jr., Z.-Y. Wang, and R.A. Dixon. 2013. A genomics approach to deciphering lignin biosynthesis in switchgrass (Panicum virgatum L.). Plant Cell 25: 4342-4361. 183. Higginbotham, K.L., K.P. Burris, S. Zivanovic, P.M. Davidson, C.N. Stewart, Jr. 2014. Aqueous extracts of Hibiscus sabdariffa calyces as an antimicrobial rinse on hot dogs against Listeria monocytogenes and methicillin-resistant Staphylococcus aureus. Food Control 40: 274-277. 184. Higginbotham, K.L., K.P. Burris, S. Zivanovic, P.M. Davidson, C.N. Stewart, Jr. 2014. Antimicrobial activity of Hibiscus sabdariffa aqueous extracts against Escherichia coli O157:H7 and Staphylococcus aureus in a microbiological medium and milk of varying fat concentrations. Journal of Food Protection 77: 262-268. 185. Resnick, D.B., and C.N. Stewart, Jr. 2014. Expanding the scope of responsible conduct in research instruction. Accountability in Research 21:321-327. 186. Xie, F., C.N. Stewart, Jr., F. Taten, Q. He, H. Liu, B. Zhang. 2014. High throughput deep sequencing shows that microRNAs play important roles in switchgrass responses to drought and salinity stress for biofuel production. Plant Biotechnology Journal12: 354-366. 187. Gressel, J., C.N Stewart, Jr., L.V. Giddings, A.J. Fischer, J.C. Streibig, N.R. Burgos, A. Trewavas, A. Merotto, Jr., C.J. Leaver, K. Ammann, V. Moses, A. Lawton-Rauh. 2014. Overexpression of epsps transgene in weedy rice: insufficient evidence to support multiple conclusions about biosafety. New Phytologist 202:360-362. 188. Salgotra, R.K., B.B. Gupta, C.N. Stewart, Jr. 2014. From genomics to functional markers in

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the era of next-generation sequencing. Biotechnology Letters 36: 417-426. 189. Liu, W., M.R. Rudis, Y. Peng, M. Mazarei, R.J. Millwood, J.-P. Yang, W. Yu, J.D. Chesnut, C.N. Stewart Jr. 2014. Synthetic TAL effectors for targeted enhancement of transgene expression in plants. Plant Biotechnology Journal 12: 436-446 (with accompanying journal cover). 190. Stewart, C.N., Jr. 2014. Images and imagination: the role of figures in plant cell and molecular biology publications. Plant Cell Reports 33: 829-830. 191. Darbani, B., C.N. Stewart, Jr. 2014. Reproducibility and reliability assays of gene expression measurements. Journal of Biological Research 21:3. 192. Cao, D., C.N. Stewart Jr, M. Zheng, Z. Guan, Z.-X. Tang, W. Wei, K.-P. Ma. 2014. Stable Bacillus thuringiensis transgene introgression from Brassica napus to wild mustard B. juncea. Plant Science 227: 45-50. 193. Ali, A., J.C. Zinnert, B. Muthukumar, Y. Peng, S.-M. Chung, C.N. Stewart, Jr. 2014. Physiological and transcriptional responses of Baccharis halimifolia to the explosive ‘composition B’ (RDX/TNT) in amended soil. Environmental Science and Pollution Research 21: 8261-8270. 194. Fethe, M.H., W. Liu, J.N. Burris, R.J. Millwood, M. Mazarei, M.R. Rudis, D.G. Yeaman, M. Dubosquielle, C.N. Stewart Jr. 2014. The performance of pathogenic bacterial phytosensing transgenic tobacco in the field. Plant Biotechnology Journal 12: 755-764. 195. Chauhan, A. A. Smartt, J.Wang, S. Utturkar, A. Frank, M. Bi, J. Liu, D. Williams, T. Xu, M. Eldridge, A. Arreaza, A. Rogers, H.C. Gonzalez, A.C. Layton, H.L. Baxter, M. Mazarei, J.M. DeBruyn, C.N. Stewart, Jr., S.D. Brown, L.J. Hauser, G.S. Sayler. 2014. Integrated metagenomics and metatranscriptomics analyses of root-associated soil from transgenic switchgrass. Genome Announcements 2:e00777-14. doi:10.1128/genomeA.00777-14. 196. Baxter, H.L, M. Mazarei, N. Labbe, L. Kline, Q. Cheng, M. Windham, D.G.J. Mann, C. Fu, A. Ziebell, R. Sykes, M. Rodriguez, M. Davis, J. Mielenz, R.A. Dixon, Z.-Y. Wang, C.N. Stewart, Jr. 2014. Two-year field analysis of decreased recalcitrance transgenic switchgrass. Plant Biotechnology Journal 12: 914-924 (with accompanying journal cover). 197. Nageswara-Rao, M., M. Hanson, S. Agarwal, C.N. Stewart Jr. C. Kwit. 2014. Genetic diversity analysis of switchgrass (Panicum virgatum L.) populations using microsatellites and chloroplast sequences. Agroforestry Systems 88: 823-834. 198. Mahfouz, M.M., A. Piatek, C.N. Stewart Jr. 2014. Genome engineering via TALENs and CRISPR/Cas9 systems: challenges and perspectives. Plant Biotechnology Journal 12: 1006-1014.

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199. Liu, W., M. Mazarei, Y. Peng, M.H. Fethe, M.R. Rudis, J. Lin, R.J. Millwood, P.R. Arelli, C.N. Stewart, Jr. 2014. Computational discovery of soybean promoter cis-regulatory elements for the construction of soybean cyst nematode-inducible synthetic promoters. Plant Biotechnology Journal 12: 1015-1026. 200. Darbani, B., C.N. Stewart, Jr., S. Neoparvar, S. Borg. Correction of gene expression data: performance-dependency on inter-replicate and inter-treatment biases. Journal of Biotechnology 188: 100-109. 201. Zhang, W., E.R. Brown, L. Viveros, K. Burris, C.N. Stewart, Jr. 2014. Narrow terahertz attenuation signatures in Bacillus thuringiensis. Journal of Biophotonics 7: 818-824.

202. Ji, H., Y. Peng, N. Meckes, S. Allen, C.N. Stewart, Jr., and M.B. Traw. 2014. ATP-dependent binding cassette transporter G family member 16 increases plant tolerance to abscisic acid and assists in basal resistance against Pseudomonas syringae DC3000. Plant Physiology 166: 879-888. 203. Peng, Y., Z. Lai, T. Lane, M. Nageswara-Rao, M. Okada, M. Jasieniuk, H. O'Geen, R.W. Kim, R.D. Sammons, L. Rieseberg, C.N. Stewart, Jr. 2014. De novo genome assembly of the economically-important weed Conyza canadensis using integrated data from multiple sequencing platforms. Plant Physiology 166: 1241-1254. 204. Joyce, B.L., S. Eda, J. Dunlap, and C.N. Stewart, Jr. 2014. Morphology and ploidy level determination of Pteris vittata callus during induction and regeneration. BMC Biotechnology 14:96. http://www.biomedcentral.com/1472-6750/14/96/ 205. Floyd, S.K., J.G. Ryan, S.J. Conway, E. Brenner, K.P. Burris, J.N. Burris, T. Chen, P.P. Edger, S.W. Graham, J.H. Leebens-Mack, J.C. Pires, C.J. Rothfels, E.M. Sigel, D.W. Stevenson, C.N. Stewart, Jr., G.K.-S. Wong, J.L. Bowman. 2014. Origin of a novel regulatory module by duplication and degeneration of an ancient plant transcription factor. Molecular Phylogenetics and Evolution 81: 159-173. 206. Peng, Y., S. Allen, R.J. Millwood, C.N. Stewart, Jr. 2014. Building the ‘Fukusensor:’ a genetically engineered plant for reporting DNA damage in response to gamma radiation. Plant Biotechnology Journal 12:1329-1332. 207. Poovaiah, C., M. Nagaswara-Rao, J.R. Soneji, H.L. Baxter, C.N. Stewart, Jr. 2014. Altered lignin biosynthesis using biotechnology to improve lignocellulosic biofuel feedstocks. Plant Biotechnology Journal 12: 1163-1173. 208. Mitchell, J.L.B., M. Halter, C.N. Stewart, Jr., E.T. Nilsen. 2014. Cool temperature effects on photosynthetic parameters of two biomass fuel feedstocks in a low light intensity

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environment. Biofuels 5:534-544. 209. Alexander, L.W., E.R. Haynes, J. Burris, S. Jackson, C.N. Stewart, Jr. 2014. Cultural treatments for accelerated growth and flowering of Panicum virgatum Biofuels 5:771-780. 210. Piya, S., S.K. Shrestha, B. Binder, C.N. Stewart, Jr., T. Hewezi. 2014. Protein-protein interaction and gene co-expression maps of ARFs and Aux/IAAs in Arabidopsis. Frontiers in Plant Science 5: 744. http://journal.frontiersin.org/article/10.3389/fpls.2014.00744/abstract 211. Cannon, S.B., M.R. McKain, A. Harkess, M.N. Nelson, S. Dash, M.K. Deyholos, Y. Peng, B. Joyce, C.N. Stewart, Jr., M. Rolf, T. Kutchan, X. Tan, C. Chen, Y. Zhang, E. Carpenter, G.K.-S. Wong, J.J. Doyle, J. Leebens-Mack. 2015. Multiple polyploidy events in the early radiation of nodulating and nonnodulating legumes. Molecular Biology and Evolution 32: 193-210. 212. Trumbo, J.L., B. Zhang, and C.N. Stewart, Jr. 2015. Manipulating microRNAs for improved biomass and biofuels from plant feedstocks. Plant Biotechnology Journal 13: 337-354. 213. Burris, K.P., K.L. Higginbotham, C.N. Stewart, Jr. 2015. Aqueous extracts of yerba mate as bacteriacidal agents against methicillin-resistant Staphylococcus aureus in a microbiological medium and ground beef mixtures. Food Control 50: 748-753. 214. Cardinale, V.C.B., A.C.R. Dias, T.C. Mueller, L. Abercrombie, C.N. Stewart, Jr., P.J. Christoffoleti. 2015. Shikimate accumulation, glyphosate absorption and translocation in horseweed biotypes. Planta Daninha 33: 109-118. 215. Okada, M., B.D. Hanson, K.J. Hembree, Y. Peng, A. Shrestha, C.N. Stewart, Jr., S.D. Wright, and M. Jasieniuk. 2015. Evolution and spread of glyphosate resistance in Conyza bonariensis in California and a comparison with closely related Conyza canadensis. Weed Research 55:173-184. 216. Poovaiah, C.R., M. Mazarei, S.R. Decker, G.B. Turner, R.W. Sykes, M.F. Davis, C.N. Stewart, Jr. 2015. Overexpression of switchgrass sucrose synthase (PvSUS1) increases plant biomass in transgenic switchgrass (Panicum virgatum L.). Biotechnology Journal 10: 552-563. 217. Liu, Y. C.N. Stewart, Jr., J. Li. 2015. China: inform public on GM, don’t cheerlead. Nature 520: 295. 218. Liu, W., and C.N. Stewart, Jr. Plant synthetic biology. 2015. Trends in Plant Science 20: 309-317. 219. Rempe, C.S., K.P. Burris, H.L. Woo, B. Goodrich, D.K. Gosnell, T.J. Tschaplinski, C.N. Stewart, Jr. 2015. Computational ranking of yerba mate small molecules based on their predicted contribution to antibacterial activity against methicillin-resistant Staphylococcus aureus. PLOS

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ONE 10(5): e0123925. http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0123925 220. Wuddineh, W.A., M. Mazarei, J. Zhang, C.R. Poovaiah, D.G.J. Mann, A. Ziebell, R.W. Sykes, M.F. Davis, M.K. Udvardi, C.N. Stewart, Jr. 2015. Identification and overexpression of gibberellin 2-oxidase (GA2ox) in switchgrass (Panicum virgatum L.) for improved plant architecture and reduced biomass recalcitrance. Plant Biotechnology Journal 13: 636-647. 221. Liu, Y.-B., H. Darmency, C. N. Stewart, Jr., W. Wei, Z.-X. Tang, K.-P. Ma. 2015. The effect of Bt-transgene introgression on plant growth and reproduction in wild Brassica juncea. Transgenic Research 24: 537-547. 222. Liu, J., N. Nana, J.N. Grant, Z.-M. Cheng, C.N. Stewart, Jr., T. Hewezi. 2015. Soybean kinome: functional classification and gene expression patterns. Journal of Experimental Botany 66: 1919-1934. 223. Liu, Y., J. Li, C.N. Stewart, Jr., Z. Luo, N. Xiao. 2015 The effects of the presence of Bt-transgenic oilseed rape in wild mustard populations on the rhizosphere nematode and microbial communities. Science of the Total Environment 530-531: 263-270. 224. Wuddineh, W.A., M. Mazarei, G.B. Turner, R.W. Sykes, S.R. Decker, M.F. Davis, C.N. Stewart, Jr. 2015 Identification and molecular characterization of the switchgrass AP2/ERF transcription factor superfamily, and overexpression of PvERF001 for improvement of biomass characteristics for biofuel. Frontiers in Bioengineering and Biotechnology 3: 101. http://journal.frontiersin.org/article/10.3389/fbioe.2015.00101/abstract 225. Rambani, A., J.H. Rice, J. Liu, T. Lane, P. Ranjan, M. Mazarei, V. Pantalone, C.N. Stewart, Jr., M. Staton, T. Hewezi. 2015. The methylome of soybean roots during the compatible interaction with the soybean cyst nematode. Plant Physiology 168: 1364-1377. 226. Rothfels, C.J., F.-W. Li, E.M. Sigel, L. Huiet, A. Larsson, D.O. Burge, M. Ruhsam, M. Deyholos, D.E. Soltis, C.N. Stewart, Jr., S.W. Shaw, L. Pokorny, T. Chen, C. dePamphilis, L. DeGironimo, L. Chen, X. Wei, X. Sun, P Korall, D.W. Stevenson, S.W. Graham, G.K.-S. Wong, K.M. Pryer. 2015. The evolutionary history of ferns inferred from 25 low-copy nuclear genes. American Journal of Botany 102: 1089-1107. 227. Huang, H., R. Ye, M. Qi, X. Li, D.R. Miller, C.N. Stewart, D.W. DuBois, J. Wang. 2015. Wind-mediated horseweed (Conyza canadensis) gene flow: pollen emission, dispersion, and deposition. Ecology and Evolution 5: 2646-2658. 228. Baxter, H.L., C.R. Poovaiah, K.L. Yee, M. Mazarei, M. Rodriguez, Jr., O.A. Thompson, H. Shen, G.B. Turner, S.R. Decker, R.W. Sykes, F. Chen, M.F. Davis, J.R. Mielenz, B.H. Davison, R.A. Dixon, C.N. Stewart Jr. 2015. Field evaluation of transgenic switchgrass plants overexpressing PvMYB4 for reduced biomass recalcitrance. BioEnergy Research 8: 910-921.

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229. Mitchell, J.L.B., M. Halter, C.N. Stewart, Jr., E.T. Nilsen. 2015. Photosynthetic parameters of switchgrass (Panicum virgatum) under low radiation: influence of stable overexpression of Miscanthus x giganteus PPDK on responses to light and CO2 under warm and cool growing conditions. New Negatives in Plant Science 1-2: 23-32. 230. Joyce, B.L., V.D. Zheljazkov, R. Sykes, C.L. Cantrell, C. Hamilton, D.G.J. Mann, M. Rodriguez, J.R. Mielenz, T. Astatkie, and C.N. Stewart, Jr. 2015. Ethanol and high-value terpene co-production from lignocellulosic biomass of Cymbopogon flexuosus and Cymbopogon martinii. PLoS ONE 10(10): e0139195. http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0139195 231. Burkhardt, A. A. Gawde, C.L. Cantrell, H.L. Baxter, B.L. Joyce, C.N. Stewart, Jr., V.D. Zheljazkov 2015. Effects of produced water on soil characteristics, plant biomass, and secondary metabolites. Journal of Environmental Quality 44: 1938-1947. 232. Liu, Y., Y.-X. Zhang, S.-Q. Song, J. Li, C.N. Stewart, Jr., W. Wei, Y. Zhao, W.-Q. Wang. 2015. A proteomic analysis of seeds from Bt-transgenic Brassica napus and hybrids with wild B. juncea. Scientific Reports 5: 15480. 233. Liu, Y., C. N. Stewart, Jr., J. Li, H. Huang, X. Zhang. 2015. The presence of Bt-transgenic oilseed rape in wild mustard populations affects plant growth. Transgenic Research 24: 1043-1053. 234. Ye, R., H. Huang, J. Alexander, W. Liu, R.J. Millwood, J. Wang, C.N. Stewart., Jr. 2016. Field studies on dynamic pollen production, deposition and dispersion from glyphosate-resistant horseweed (Conyza canadensis). Weed Science 64: 101-111. 235. Liu, W., C.N. Stewart, Jr. 2016. Plant synthetic promoters and transcription factors. Current Opinion in Biotechnology 37: 36-44. 236. Sykes, V.R., F.L. Allen, J.R. Mielenz, C.N. Stewart, Jr., M.T. Windham, C.Y. Hamilton, M. Rodriguez, Jr., K.L. Yee. 2016. Reduction of ethanol yield from switchgrass infected with rust caused by Puccinia emaculata. Bioenergy Research 9: 239-247. 237. Burris, K.P., E.M Dlugosz, A.G. Collins, C.N. Stewart, Jr., S.C. Lenaghan. 2016. Development of a rapid, low-cost protoplast transfection system for switchgrass (Panicum virgatum L.). Plant Cell Reports 35: 693-704. 238. Millwood, R.J., H.S. Moon, C.R. Poovaiah, B. Muthukumar, J.H. Rice. J.M. Abercrombie, L.L Abercrombie, W.D. Green, C.N. Stewart, Jr. 2016. Engineered selective plant male sterility through pollen-specific expression of the EcoRI restriction endonuclease. Plant Biotechnology Journal 14: 1281-1290. http://onlinelibrary.wiley.com/doi/10.1111/pbi.12493/epdf

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239. Wuddineh, W.A., M. Mazarei, J.-Y. Zhang, G. Turner, R. Sykes, S.R. Decker, M.F. Davis, M. Udvardi, C.N. Stewart, Jr. 2016. Identification and overexpression of a Knotted1-like transcription factor in switchgrass (Panicum virgatum L.) for lignocellulosic feedstock improvement. Frontiers in Plant Science 7:520. http://journal.frontiersin.org/article/10.3389/fpls.2016.00520/abstract 240. Baxter, H.L., L.W. Alexander, M. Mazarei, E. Haynes, G.B. Turner, R.W. Sykes, S.R. Decker, M.F. Davis, R.A. Dixon, Z.-Y.Wang, C.N. Stewart, Jr. 2016. Hybridization of downregulated-COMT transgenic switchgrass lines with field selected switchgrass for improved biomass traits. Euphytica 209: 341-355. 241. Lane, T.S., C.S. Rempe, J. Davitt, M.E.Staton, Y. Peng, D.E. Soltis, M. Melkonian, M. Deyholos, J.H. Leebens-Mack, M. Chase, C.J. Rothfels, D. Stevenson, S.W Graham, J.Yu, T. Liu, J.C. Pires, P.P. Edgar, Y. Zhang, Y. Xie, Y. Zhu, E. Carpenter, G.K.-S. Wong, C.N. Stewart, Jr. 2016. Diversity of ABC transporter genes across the plant kingdom and their potential utility in biotechnology. BMC Biotechnology 16:47. http://www.biomedcentral.com/1472-6750/16/47 242. Willis, J.D., M. Mazarei, C.N. Stewart, Jr. 2016. Transgenic plant-produced hydrolytic enzymes and the potential of insect gut-derived hydrolases for biofuels. Frontiers in Plant Science 7: 675. http://journal.frontiersin.org/article/10.3389/fpls.2016.00675/abstract 243. Mahfouz, M., T. Cardi, and C.N. Stewart, Jr. 2016. Next-generation precision genome engineering and plant biotechnology. Plant Cell Reports 35: 1397-1399. 244. Cardi, T., C.N. Stewart, Jr. 2016. Progress of targeted genome modification approaches in higher plants. Plant Cell Reports 35: 1401-1416. 245. Altpeter, F., N.M. Springer, L.E. Bartley, A.E. Blechl, T.P. Brutnell, V. Citovsky, L.J. Conrad, S.B. Gelvin, D.P. Jackson, A.P. Kausch, P.G. Lemaux, J.I. Medford, M.L. Orozco-Cárdenas, D.M. Tricoli, J. Van Eck, D.F. Voytas, V. Walbot, K. Wang, Z.J. Zhang, C.N. Stewart, Jr. 2016. Advancing crop transformation in the era of genome editing. Plant Cell 15:1510-1520 doi: http://dx.doi.org/10.1105/tpc.16.00196 246. Dlugosz, E.M., S.C. Lenaghan, C.N. Stewart, Jr. 2016. A robotic platform for high-throughput protoplast isolation and transformation. Journal of Visualized Experiments (115), e54300, doi: 10.3791/54300. 247. Willis, J.D., J.A. Smith, M. Mazarei, J.-Y. Zhang, G.B. Turner, S.R. Decker, R.W. Sykes, C.R. Poovaiah, H.L. Baxter, M.F. Davis, M.K. Udvardi, M.J. Peña, J. Backe, M. Bar-Peled, C. N. Stewart, Jr. 2016. Downregulation of a UDP-arabinomutase gene in switchgrass (Panicum virgatum L.) results in increased cell wall lignin while reducing arabinose-glycans. Frontiers in Plant Science 7:1580. doi:10.3389/fpls.2016.01580.

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248. Lin, J. M. Mazarei, N. Zhao, C.A. Hatcher, W.A. Wuddineh, M. Rudis, T.J. Tschaplinski, V.R. Pantalone, P.R. Arelli, T. Hewezi, F. Chen, C.N. Stewart, Jr. 2016. Transgenic soybean overexpressing GmSAMT1 exhibits resistance to multiple-HG types of soybean cyst nematode Heterodera glycines. Plant Biotechnology Journal 14: 2100-2109. 249. Baxter, H.L.,M. Mazarei, C. Fu, K. Cheng, G.B. Turner, R.W. Sykes, M.T. Windham, M.F. Davis, R.A. Dixon, Z.-Y.Wang, C.N. Stewart, Jr. 2016. Time course field analysis of COMT-downregulated switchgrass: lignification, recalcitrance, and rust susceptibility. BioEnergy Research. 10.1007/s12155-016-9751-1 250. DeBruyn, J. M.; D.A. Bevard, M.E. Essington, J.Y. McKnight, S.M. Schaeffer, H.L. Baxter, M, Mazarei, D.G.J. Mann, R.A. Dixon, F. Chen, C Zhuo, Z.-Y. Wang, C.N. Stewart, Jr. 2016. Field grown transgenic switchgrass Panicum virgatum L.with altered lignin does not affect soil chemistry, microbiology and carbon storage potential GCB Bioenergy DOI: 10.1111/gcbb.12407 251. Pigna, G., T. Dhillon, E.M. Dlugosz, J.S. Yuan, C. Gorman, P. Morandini, S.C. Lenaghan, C.N. Stewart, Jr. 2016. Methods for suspension culture, protoplast extraction, and transformation of high-biomass yielding perennial grass Arundo donax. Biotechnology Journal DOI: 10.1002/biot.201600486 252. Lin, J., D. Wang, X. Chen. T.G. Köllner, M. Mazarei, H. Guo, V.R. Pantalone, P. Arelli, C.N. Stewart, Jr., N. Wang, F. Chen. 2016. An (E,E)-α-farnesene synthase gene of soybean has a role in defense against nematodes and is involved in synthesizing insect-induced volatiles. Plant Biotechnology Journal. DOI: 10.1111/pbi.12649

253. Dumitrache, A., J. Natzke, M. Rodriguez, K.L. Yee, O.A. Thompson, C.R. Poovaiah, H. Shen, M. Mazarei, H.L. Baxter, C. Fu, Z.-Y. Wang, A.K. Biswal, G. Li, Y. Tang, C.N. Stewart, Jr., R.A. Dixon, R.S. Nelson, D. Mohnen, J. Mielenz, S.D. Brown, B.H. Davison. 2016. Transgenic switchgrass (Panicum virgatum L.) targeted for reduced recalcitrance to bioconversion: a two-year comparative analysis of field-grown lines modified for target gene or genetic element expression. Plant Biotechnology Journal 10.1111/pbi.12666 Accepted for publication/in press Submitted/in review Guan Z., W. Wei, T.X. Tang, C.N. Stewart, Jr. submitted. Loss of C-genome-specific markers during the transgene introgression from Brassica napus to wild B. juncea. Journal of Experimental Biology.

Dong, J.J., W. Wei, D.-M. Kang, C.N. Stewart Jr., K.-P. Ma. Submitted. Canopy spectral reflectance at different growth stages reveals difference between genetically modified and wild type crops. International Journal of Remote Sensing.

Manshardt, R., D. Bishaw, K. Pitz, C.N. Stewart, Jr. Gene flow from commercial transgenic

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papaya fields into feral populations in Hawaii. Acta Horticulturae.

Qi, M., H. Huang, R.Ye, X. Li, D.R. Miller, C.N. Stewart, Jr., D.W. DuBois, J. Wang. Measuring and modeling atmospheric pollen dispersion and gene flow from horseweed. Boundary-Layer Meteorology. Journal: Agriculture, Ecosystems and Environment Corresponding Author: junming wang Co-Authors: Haiyan Huang; Rongjian Ye; Meilan Qi; Xiangzhen Li; David R Miller; Charles N Stewart; David DuBoise; Title: Atmospheric seed emission, dispersion, and deposition from horseweed (Conyza canadensis)

Zheng-Jun Guan; Min Zheng; Zhi-xi Tang; Wei Wei; Stewart C. Neal Proteomic analysis of transgenic oilseed rape (Brassica napus L.) with Cry1Ac International Journal of Environmental Science and Technology

Metabolomic analysis of the mechanism of action of yerba mate extract on Salmonella Typhimurium Caroline S. Rempe; Scott C. Lenaghan; Kellie P. Burris; C. Neal Stewart, Jr. BMC Microbiology

Title: Investigating lignin precursors in plant suspension cells by Py-GC/MS

Authors: Kline, Lindsey; Lenaghan, Scott; Burris, Jason; Burris, Kellie; Soliman, Mikhael; Tetard, Laurene; Stewart, Neal; Rials, Timothy; Labbe, Nicole PBJ

Rempe, C.S. K.P Burris, S.C. Lenaghan, C.N. Stewart, Jr. Systems biology to discover plant phenolic antibacterial mechanisms. Journal of Applied Microbiology

Baxter, H.L., M. Mazarei, A. Dumitrache, J. Natzke, M. Rodriguez, Jr., J. Gou, C. Fu, R.W. Sykes, G.B. Turner, S.R. Decker, M.F. Davis, S. Brown, B.H. Davison, Z.-Y. Zhang, C.N. Stewart Jr. Optimized transgene overexpression of miR156 leads to significant gains of field-grown biomass and biofuel in switchgrass. Plant Biotechnology Journal.

Mi Li et al. Switchgrass biotech Biotechnology for Biofuels.

Book Chapters, Proceedings, Editorials, Book Reviews and other Publications 1. Boerma, H.R., J.N. All, G.B. Rowan, W.A. Parrott, C.N. Stewart, Jr., M.J. Adang, and J. W. Todd. 1994. Technologies for developing soybean varietal resistance to insects. Proceedings of the 24th Soybean Seed Research Conference pp. 41-50. 2. Stewart, C.N., Jr. 1995. Transgene pyramids for resistance management. ISB (NBIAP) News Report, December, 1995 pp. 17-18. 3. Stewart, C.N., Jr.1996. Transgenic plants: Going beyond the crossroads. GenEthics News, London, Issue 13 July/August, 1996 p.8. 4. Stewart, C.N., Jr.1996. Risk assessment of transgenic plants: Going beyond the crossroads.

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ISB (NBIAP) News Report, August, 1996 pp. 5-7. 5. Stewart, C.N., Jr. 1996. Mitigating potential risks of GMOs using in vivo markers. ISB (NBIAP) News Report, June, 1996 pp. 4-5. 6. Stewart, C.N., Jr. 1996. Book review: The Impact of Plant Molecular Genetics, Plant Science Bulletin 42:124. 7. Stewart, C.N., Jr., J.N. All, P.L Raymer, and S. Ramachandran. 1997. Transgenic insecticidal oilseed rape on the loose. pp.137-144 In: G.D.McClean, P.M. Waterhouse, G. Evans, and M.J. Gibbs (eds.) Commercialisation of Transgenic Crops: Risk, Benefit, and Trade Considerations, Cooperative Research Centre for Plant Sciences and Bureau of Resource Sciences, Canberra, Australia. 8. Leffel, S.M., S.A. Mabon, and C.N. Stewart, Jr. 1997. Green fluorescent protein as a marker for monitoring transgenic plants. pp.193-200 In: G.D.McClean, P.M. Waterhouse, G. Evans, and M.J. Gibbs (eds.) Commercialisation of Transgenic Crops: Risk, Benefit, and Trade Considerations, Cooperative Research Centre for Plant Sciences and Bureau of Resource Sciences, Canberra, Australia. 9. Leffel, S., S.A. Mabon, and C.N. Stewart, Jr. 1997. Tracking transgenic plants using green fluorescent protein. pp. 378-380 In: M. Levin, C. Grim, and J.S. Angle (eds). Biotechnology Risk Assessment: 8th Symposium of the Environmental Risks of Biotechnology Products: Risk Assessment Methods and Research Progress, Ottawa, Canada. 10. Stewart, C.N., Jr., J.N. All, P.L Raymer, and S. Ramachandran 1997. Increased fitness of transgenic insecticidal canola under insect selection pressure. pp 192-199 In: M. Levin, C. Grim, and J.S. Angle (eds). Biotechnology Risk Assessment: 8th Symposium of the Environmental Risks of Biotechnology Products: Risk Assessment Methods and Research Progress, Ottawa, Canada. 11. Stewart, C.N., Jr. 1997. Rapid DNA extraction from plants. pp. 25-28 in: M.R. Micheli and R. Bova (eds.) Fingerprinting Methods Based on Arbitrarily Primed PCR, Springer Verlag, Heidelberg. 12. Ramachandran, S., G.D. Buntin, J.N. All, P.L. Raymer, and C. N. Stewart, Jr. 1997. Greenhouse and field evaluations of canola, Brassica napus, containing a cryIAc gene against diamondback moth, Plutella xylostella (Lepidoptera: Plutellidae). Annual Plant Resistance to Insects Newsletter 23:15. 13. All, J., R. Boerma, W. Parrott, N. Stewart, P Raymer, B Rector, S. Ramachandran, D. Walker, and M. Treacy. 1998. Deployment of new genetic technologies for the management of field crop pests in the southeastern United States. Proceedings of the International Symposium of

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Entomological Diversity Towards the 21st Century, Khon Khan, Thailand. 14. Stewart, C.N., Jr. 1999. Insecticidal transgenes into nature: gene flow, ecological effects, relevancy and monitoring. pp. 179-190 In: Symposium Proceedings No. 72 Gene Flow and Agriculture—Relevance for Transgenic Crops (Ed.: P.J.W. Lutman) Proceedings of a Symposium held at the University of Keele, 12-14 April 1999. British Crop Protection Council, Surrey, UK. 15. Ramachandran, G.D. Buntin, J.N. All, P.L. Raymer, and C.N. Stewart, Jr. 1999. Evaluation and performance of transgenic oilseed rape containing a cry1Ac gene for resistance to diamondback moth. Proceedings from the International Canola Congress, Canberra, Australia. 16. Raymer, P., C.N. Stewart, Jr. G.D. Buntin, J.N. All, and S. Ramachandran. 1999. Development and agronomic performance of transgenic canola producing a Bacillus thruingiensis toxin. Proceedings from the International Canola Congress, Canberra, Australia. 17. Stewart, C.N., Jr. 2000. Book review: Progress in Risk Assessment. Trends in Plant Science 5:231. 18. Stewart, C.N., Jr., and S.K. Wheaton. 2001. Plants that detect landmines, and other biosensors. ISB News Report, February 2001, pp. 7-9. 19. Stewart, C.N., Jr., and S.K. Wheaton. 2001. The New Zealand Royal Commission on Genetic Modification. ISB News Report, April 2001, pp. 6-8. 20. Stewart, C.N., Jr., and S.K. Wheaton. 2001. Risks of genetically enhanced crops. American Bar Association 4th Biotechnology Roundtable: Assessing the Impact of the Biosafety Protocol. pp. 1-11. American Bar Association, Chicago, Ill. 21. Millwood, R.J., M.D. Halfhill, and C.N. Stewart, Jr. 2001. Visualization of GFP transgenic plant cells from undifferentiated tissue to shoots, GFP in Motion II CD. Supplement to Trends in Cell Biology, May, 2001. 22. Stewart, C.N., Jr. 2001. The key to public acceptance of GMOs. The Genetics Society of Canada Bulletin 32:19.

23. Leffel, S.M., S.A. Mabon, and C.N. Stewart, Jr. 2001. Applications of green fluorescent protein in plants, pp 139-143, in Q. Lu and M.P. Weiner (Eds.), Cloning and Expression Vectors for Protein Studies. Eaton Publishing, Westborough, Mass. 24. Stewart, C.N., Jr. 2001. Update to applications of green fluorescent protein in plants, pp. 144-145 in Q. Lu and M.P. Weiner (Eds.), Cloning and Expression Vectors for Protein Studies. Eaton Publishing, Westborough, Mass.

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25. Stewart, C. N. Jr., M.D. Halfhill, and H.A. Richards. 2001. GFP in plant biotechnology and agriculture, pp. 453-456 in Bioluminescence and Chemiluminescence 2000, J F Case, PJ Herring, BH Robison, SHD Haddock, LJ Kricka, PE Stanley (Eds). World Scientific Publishing Company, Singapore. 26. Stewart, C.N., Jr. 2002. The future of transgenic plants. ISB News Report, January 2002, pp. 7-8. 27. Stewart, C.N., Jr., M.D. Halfhill, R.J. Millwood. 2002. GFP in transgenic plants: Brassica transformation. pp. 245-252. In: Green Fluorescent Protein, Methods and Protocols, B. Hicks, (Ed.) Methods in Molecular Biology, Humana Press. Totowa, NJ. 28. Halfhill, M.D., S. Warwick, and C.N. Stewart, Jr. 2002. Gene flow and its consequences: Brassica napus (canola, oilseed rape) to wild relatives. Scientific Methods Workshop: Ecological and Agronomic Consequences of Gene Flow from Transgenic Crops to Wild Relatives, Meeting Proceedings. pp. 80-86. http://www.biosci.ohio-state.edu/~lspencer/Proceedings.pdf 29. Stewart, C.N., Jr. 2002. The maturation of agricultural biotechnology risk assessment research. ISB News Report, April 2002, pp. 1-3. 30. Stewart, C.N., Jr. 2002. Genetically modified plants for tactical systems applications. Pp. 290-296 In: E. Carapezza (Ed.) Proceedings of SPIE Volume: 4743, Unattended Ground Sensor Technologies and Applications IV. 31. Stewart, C.N., Jr. 2002. Genetically modified plants for law enforcement applications. Pp. 233-239 In: E. Carapezza (Ed.) Proceedings of SPIE Volume: 4708, Sensors, and Command, Control, Communications, and Intelligence (C3I) Technologies for Homeland Defense and Law Enforcement. 32. Stewart, C.N., Jr. and S.K. Wheaton. 2002. Urban myths and real risks of genetically enhanced (GE) crops. pp. 528-551. In: Plants, Genes, and Crop Biotechnology. Maarten J. Chrispeels and David E. Sadova, (Eds) Bartlett and Jones Publishers, Sudbury, Mass. 33. Stewart, C.N., Jr. 2002. Transgene movement, introgression, and promoter hopping. ISB News Report, May 2002, pp. 1-3. 34. Stewart, C.N., Jr. 2003. Insecticidal transgenic plants: making them and making them behave. Pp. 217-224 in: Molecular Insight in Plant Biology, P. Nath, A.K. Mattoo, S.A. Ranade and J.H.Weil (Eds.) Science Publishers, Plymouth, UK. 35. Stewart, C.N., Jr., and Anil Day. 2003. Introduction: the future of transgenic plants. Pp. 1-9 In: Transgenic Plants: Current Innovations and Future Trends, C.N. Stewart, Jr. (Ed.) Horizon Scientific Press. Wymondham, UK.

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36. Stewart, C.N. Jr., Halfhill, M.D., R.J. Millwood, P.L. Raymer, 2003. Cross-breeding modified crops. Letter to the editor. New Scientist. Jan, 11 (web version http://www.newscientist.com/opinion/opletters.jsp?id=ns237719) 37. Irwin, R., Stewart, C.N., Jr. and 12 other authors. 2004. Extending the net fitness model to considerations of crop gene flow. ISB News Report, January 2004, pp. 1-11. 38. Stewart, C.N., Jr. M.D. Halfhill and S.I Warwick. 2004. Response. Nature Reviews Genetics Published online: 20 March 2004 doi:10.1038/nrg1179-c2 39. Halfhill, M.D., S.I. Warwick, and C.N. Stewart, Jr. 2004. Transgene expression and genetic introgression associated with the hybridization of GFP transgenic canola (Brassica napus L.) and wild accessions of bird rape (Brassica rapa L.) Pp. 263-277 In: Den Nijs, H., Bartsch, D., and Sweet, J. (Eds.) Introgression from Genetically Modified Plants into Wild Relatives. CABI Publishing, Wallingford, UK. 40. Chevre, A-M., H. Ammitzbøll, B. Breckling, A. Dietz-Pfeilstetter, F. Eber, A. Fargue, C. Gomez-Campo, E. Jenczewski, R. Jørgensen, C. Lavigne, M.S. Meier, H. den Nijs, K. Pascher, G. Seguin Schwartz, J. Sweet, C.N. Stewart, Jr., S. Warwick. 2004. A review on interspecific gene flow from oilseed rape to wild relatives. Pp. 235-251 In: Den Nijs, H., Bartsch, D., and Sweet, J. (Eds.) Introgression from Genetically Modified Plants into Wild Relatives. CABI Publishing, Wallingford, UK. 41. Richards, H.A., L.C. Hudson, M.D. Halfhill, C.N. Stewart, Jr. 2004. Genetically modified controversy: sensational headlines versus pragmatic research. Pp. 251-264 In: Plant Development & Biotechnology. Trigiano, RN and Gray, DJ (Eds). CRC Press, LLC, Boca Raton, FL. 42. Halfhill, M.D., R.J. Millwood, and C.N. Stewart, Jr. 2004. GFP Quantification in whole plants. Pp. 215-226. In: L. Pena (Ed). Transgenic Plants: Methods and Protocols. Methods in Molecular Biology. Humana Press, Totawa, NJ. 43. Hudson, L.C., M.D. Halfhill, and C.N. Stewart, Jr. 2004. Transgene dispersal through pollen. Pp. 365-374 In: L. Pena (Ed). Transgenic Plants: Methods and Protocols. Methods in Molecular Biology. Humana Press, Totawa, NJ. 44. Stewart, C.N., Jr. 2004. New frontiers in weed science: from transgenics to genomics. Pp 22-25 in B.M. Sindel and S.B. Johnson (Eds) Proceedings of the 14th Australian Weed Conference. Weed Society of New South Wales, Wagga Wagga, Australia. 45. Cardoza, V., and C.N. Stewart, Jr. 2004. Agrobacterium-mediated transformation of canola. Pp. 379-387, In: Curtis, I.S. (Ed.) Transgenic Crops of the World: Essential Protocols, Kluwer Academic Publishers, Dordrecht, The Netherlands.

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46. Warwick, S.I., and C.N. Stewart, Jr. 2005. Crops come from wild plants: How domestication, transgenes, and linkage effects shape ferality, pp. 9-30 in: J. Gressel (Ed). Crop Ferality and Volunteerism. CRC Press, Boca Raton, Florida. 47. Rao, M.R., M.D. Halfhill, and C.N. Stewart, Jr. 2005. Phytosensing and phytoremediation: a plant approach to locate and eliminate contamination resulting from explosive chemicals. Pp. 134-142 in: D. Thangadurai, T. Pullaiah and L. Tripathy (Eds) Genetic Resources and Biotechnology, Vol 3. Regency Publications New Delhi. 48. Abercrombie, J.M., M.D. Halfhill, and C.N. Stewart, Jr. 2005. Transgenic plants for environmental monitoring and extraction of arsenic, pp. 143-152 in: D. Thangadurai, T. Pullaiah and L. Tripathy (Eds) Genetic Resources and Biotechnology, Vol 3. Regency Publications New Delhi. 49. Stewart, C.N., Jr. 2005. Plants that detect landmines. Tennessee District 2 Homeland Security Newsletter Vol 1, Num 3, p. 2. 50. Stewart, C.N., Jr., and A. Mentewab 2005. Horizontal gene transfer: plant vs. bacterial genes for antibiotic resistance scenarios—What’s the difference? ISB News Report, October 2005, pp. 1-3. 51. Stewart, C.N., Jr. 2005. Gene flow and the risk of transgene spread. http://agribiotech.info/moreIssues.htm (invited and peer-reviewed agricultural biotechnology white paper). 52. Yuan, J.S. and C. N. Stewart, Jr. 2005. Real-time PCR statistics. PCR Encyclopedia 1: 101127-49. 53. Stewart, C.N., Jr. 2005. Open-source agriculture. ISB News Report. December, 2005 pp 1-3. 54. Stewart, C.N., Jr. 2005. Book review: Plant Functional Genomics. Quarterly Review of Biology. 80: 483. 55. Himanen, S., A.-M Nerg, A. Nissinen, G.M. Poppy, C.N. Stewart, Jr., and J.K. Holopainen. 2006. Studying constitutive and inducible defence of Bt oilseed rape in elevated atmospheric CO2 and ozone concentrations. IOBC Bulletin Proceedings. 56. Cardoza, V., and C.N. Stewart, Jr. 2006. Canola (Brassica napus L), pp. 257-266, in: (K. Wang (Ed.) Agrobacterium Protocols (Methods in Molecular Biology Vol. 343), Humana Press, Totawa, NJ. 57. Cardoza, V., and C.N. Stewart, Jr. 2007. Rapeseed biotechnology, pp. 436-449, in:

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S.K.Gupta (Ed). Advances in Botanical Research Volume 45 Rapeseed Breeding. Elsevier Publishing. San Diego. 58 Cardoza, V., and C.N. Stewart, Jr. 2007. Canola, pp. 29-38 in: E.C. Pua and M.R. Davey (Eds) Biotechnology in Agriculture and Forestry Volume 61. Transgenic Crops VI", Springer Verlag, Heidelberg. 59. Stewart, C.N., Jr. 2008. Nanotechnologies and fluorescent proteins for in planta functional genomics, pp. 417-430 in: Guenter Kahl and Khalid Meksem (Eds), The Handbook of Plant Functional Genomics--Concepts and Protocols, Wiley-VCH, Weinheim, 548 pp.

60. Stewart, C.N., Jr. and D.W. Ow. 2008. The future of plant biotechnology, Pp. 357-369 in: C.N. Stewart, Jr. (Ed.) Plant Biotechnology and Genetics: Principles, Techniques and Applications, Wiley and +Sons, Hoboken, New Jersey; 374 pp. 61. Stewart, C.N., Jr. 2008. Gene flow and the risk of transgene spread. http://agribiotech.info/moreIssues.htm (invited and peer-reviewed agricultural biotechnology white paper) (March 8 2008). 62. Stewart, C.N., Jr. and M. Littmann. 2008. Media treatment of plant biotechnology. http://agribiotech.info/moreIssues.htm (invited and peer-reviewed agricultural biotechnology white paper) (March 8 2008). 63. Panthee, D., Yuan, J. S., Wright, D., Marois, J., Stewart Jr., C. N. 2008. Growth stage specificity for differential gene expression in soybean in response to Phakopsora pachyrhizi Sydow. Third International Plant Pathology Conference; Nov 19-21, Lahore, Pakistan. 64. Stewart, C.N., Jr. and J.S. Yuan. 2008. Biotechnology and biofuels. http://agribiotech.info/moreIssues.htm (invited and peer-reviewed agricultural biotechnology white paper) (June 22 2008). 65. Stewart, C.N., Jr. 2008. Transgene biocontainment strategies via recombination: removal of transgenes from plant pollen. Pp. 10-17 in AGRA proceedings. 66. Millwood, R.J., H.S. Moon, and C.N. Stewart, Jr. 2008. Fluorescent proteins in transgenic plants. Pp. 387-404 In: C.D Geddes (Ed.) Reviews in Fluorescence 2008, Springer (Heidelberg). 67. Cardoza, V., and C.N. Stewart, Jr. 2009. Biotechnology, pp. 285-292 in: S.K.Gupta (Ed). Biology and Breeding of Crucifers. Taylor and Francis Group, Boca Raton.

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68. Hu, J., P.J. Tranel, C.N. Stewart, Jr., and J.S. Yuan. 2009. Molecular and genomic mechanisms of non-target site herbicide resistance. Pp149-161 In: Stewart, C.N., Jr. (Ed.) Genomics of Weedy and Invasive Plants, Blackwell Scientific Publishing, Ames Iowa. 69. Richards, H.A., L.C. Hudson, M.D. Halfhill, C.N. Stewart, Jr. 2009. Genetically modified controversy: sensational headlines versus pragmatic research. In: Plant Development & Biotechnology (Second Edition). Trigiano, RN and Gray, DJ (Eds). CRC Press, LLC, Boca Raton, FL. 70. Stewart, C.N., Jr. 2009. Biotechnology tools for switchgrass improvement. Proceedings of China-US Workshop: Bioenergy Consequences for Global Environmental Change. Beijing, October 15-18. University of Tennessee Institute for a Secure and Sustainable Environment; pp. 67-69. 71. Joyce, B., H. Al-Ahmad, F. Chen., C. Basu., and C. N. Stewart, Jr. 2010. Diesel tree: Copaifera. In: Chittaranjan Kole, Chandrasekhar P. Joshi and David R. Shonnard (Eds). Bioenergy Crops: Volume 3, Emerging Bioenergy Crops. Springer Verlag, Heidelberg. 72. Millwood R.J., H.S. Moon, C. N. Stewart, Jr. 2010. Applications of fluorescent proteins in whole plants. In Chris D. Geddes (Ed.). Topics in Fluorescence Spectroscopy Volume 14, Springer. 73. Kausch A.P., J. Hague, M. Oliver, Y. Li, H. Daniell, P.Mascia, C.N. Stewart, Jr. 2010. Genetic modification in dedicated bioenergy crops and strategies for gene confinement. Pp. 299-315. In: Widholm, J. and T. Nagata (Eds) Biotechnology in Agriculture and Forestry; P.N Maschia, J. Scheffran, and J. Widholm (Eds), 66. Plant Biotechnology for Sustainable Production of Energy and Co-products. Springer Verlag, Heidelberg. 74. Kausch, A.P., J. Hague, M. Oliver, L.S. Watrud, C. Mallory-Smith, V. Meier, A. Snow, and C. N. Stewart, Jr. 2010. Gene flow in genetically engineered perennial grasses: lessons for modification of dedicated bioenergy crops. Pp. 285-298, In: Widholm, J. and T. Nagata (Eds) Biotechnology in Agriculture and Forestry; P.N Maschia, J. Scheffran, and J. Widholm (Eds), 66. Plant Biotechnology for Sustainable Production of Energy and Co-products. Springer Verlag, Heidelberg. 75. Stewart, C. N., Jr., Y. Peng, L. G. Abercrombie, M. D. Halfhill, M. R. Rao, P. Ranjan, J. Hu, R. D. Sammons, G. R. Heck, P. J. Tranel, J. S. Yuan 2010. Genomics of glyphosate resistance. Pp 149-164 in V. Nandula (ed). Glyphosate Resistance in Crops and Weeds. Wiley-Blackwell. 76. Mann, D.G.J, P.R. LaFayette, L.G Abercrombie, W.A. Parrott, C.N. Stewart, Jr. 2011. pANIC: A versatile set of Gateway-compatible vectors for gene overexpression and RNAi-mediated down-regulation in monocots. Pp. 161-168 In: Stewart, C.N., Jr., A. Touraev, V. Citovsky, T. Tzfira (Eds). Plant Transformation Technologies. Wiley-Blackwell Scientific Publishing, Ames Iowa.

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77. Moon, H.S. and C.N Stewart, Jr. 2011. An overview of male sterility strategies for transgene biocontainment. Pp. 58-62 in The Science of Gene Flow in Agriculture and its Role in Co-existence Proceedings. Washington, DC, September 7-8, 2011. 78. Stewart, C.N., Jr. 2011. Biotic and abiotic stress tolerance in transgenic plants: greater gene flow and fitness? ISB News Report, November, 2011, pp. 6-8. 79. Anonymous 2011. Chapter 16. Developments in plant sciences [unattributed contribution by C.N Stewart, Jr. and C. Basu], pp. 464-471 in B. Babbit, L. Sorochan, R. Pittenger (eds). Master Gardener Handbook, UT Extension Publication 1578. 80. Joyce, B.L. H. Al-Ahmad, F. Chen.and C.N. Stewart, Jr. 2011.Chapter 24. Diesel trees. Pp. 615-625 in C. Kole, C.P. Joshi, D.R. Shonnard, R. Tressider (eds); Handbook of Bioenergy Crop Plants, Taylor and Francis. 81. Van Deynze, A., K.J. Bradford, J. DiTomaso, R. Van Acker, N. Kalaitzandonakes C. Mallory Smith, C.N. Stewart, Jr, H. Daniell, S.H. Strauss 2011. The Science of Gene Flow in Agriculture and its Role in Co-existence, Meeting Report for Conference Sept 7-8th, 2011, Washington, DC. http://www.nifa.usda.gov/nea/plants/pdfs/gene_flow_ag_report.pdf 82. Li, Y., S. Lenaghan, J. Burris, C.N. Stewart, Jr., L. Parker, and M. Zhang. 2011. Detecting the environmental impact of nanoparticles using plant-based biosensors. Nanotechnology (IEEE Nano) Proceedings pp 48-52. 83. Cardoza, V. and C.N. Stewart, Jr. 2012 Biotechnology. Pp. 93-104 in S.K. Gupta (Ed). Technological Innovations in Major World Oil Crops Volume 2: Perspectives. Springer, Heidelberg. 84. Wei, W. R.J. Millwood, H.S. Moon, C. Kwit and C.N. Stewart, Jr. 2012. Assessment and detection of transgene flow; pp 27-40 in: M. Oliver and Y. Li (Eds) Plant Gene Containment. Wiley-Blackwell, Ames, Iowa. 85. Nageswara-Rao, M., C. K. Kwit, C. N. Stewart, Jr. 2012. Grass to solve global petrol security problem. BioSpectrum Aug 30 2012. http://www.biospectrumasia.com/biospectrum/opinion/3439/grass-solve-global-petrol-scarcity#.UEXqttZlR-2 86. Syrenne, R.D., W. Shi, C.N. Stewart, J.S. Yuan. 2012 Omics platforms: importance of twenty-first century genome-enabled technologies in seed developmental research for improved seed quality and crop yield, pp 43-60, in: G.K Agarwal and R. Rakwal (eds). Seed Development: OMICS Technologies Toward Improvement of Seed Quality and Crop Yield. Springer, Dordrecht, 580 pp. 87. Holopainen, J.K., S.J. Himanen, J.S. Yuan, F. Chen, and C.N. Stewart, Jr. 2013. Ecological

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functions of terpenoids and climate changes. Pp 2913-2940. Handbook of Natural Products.

88. Mitchell, J., M. Halter, C.N. Stewart, Jr. 2013. Biotechnological improvement of switchgrass for higher biomass yield under cool growing conditions. 2012 Sungrant National Conference Proceedings. http://sungrant.tennessee.edu/NR/rdonlyres/40B6A4BE-C9A0-4A32-BBD0-8D5A2CF0D436/3692/18Nilsen_Erik.pdf

89. Baxter, H.L. M. Mazarei, N. Labbe, L.M. Kline, M. T. Windham, D.G.J Mann, C. Fu, J.N. Grant, C.R. Poovaiah, H. Shen, W. A. Wuddineh, A. Ziebell, M. F. Davis, F. Chen, T. J. Tschaplinski, J. R. Mielenz, Z-Y Wang, R. A. Dixon, C. N. Stewart, Jr. 2013 Field-based experiments on low-lignin switchgrass as a feedstock for lignocellulosic biofuel production. 2012 Sungrant National Conference Proceedings. http://sungrant.tennessee.edu/NR/rdonlyres/40B6A4BE-C9A0-4A32-BBD0-8D5A2CF0D436/3691/17Stewart_Neal.pdf 90. Brown, E.R., W. Zhang, L.K. Viveros, E.A Mendoza, Y. Kuznetsova, S.R.J. Brueck, K.P. Burris, R.J. Millwood, C.N. Stewart. 2014. High-resolution THz spectroscopy of biomolecules and bioparticles: concentration methods. Pp. 7-12 in: Terahertz and Mid Infrared Radiation: Detection of Explosives and CBRN (Using Terahertz); NATO Science for Peace and Security Series B: Physics and Biophysics 2014, pp 7-18 91. Kwit, C.K., M. Nageswara-Rao, C. N. Stewart, Jr. 2014. Switchgrass as a bioenergy crop: advantages, concerns, and future prospects. Pp. 403-420 in: Hong Luo, Yanqi Wu, Chittaranjan Kole (Eds) Compendium of Bioenergy Plants: Switchgrass. CRC Press. 92. Hahne, G., J.R. Liu., and N. Stewart. 2014 Special issue: “Plant science and biotechnology in China”: part two. Plant Cell Reports 33: 539. 93. Hahne, G., J.R. Liu., and N. Stewart. 2014 Special issue: “Plant science and biotechnology in China.” Plant Cell Reports 33: 681. 94. Stewart, C.N., Jr. 2014. The future role of biotechnology to enable next-generation biofuel production. Plant Biotechnology Journal 12: 1153. 95. Suh, M.C., G. Hahne, J.R. Liu, C.N. Stewart., Jr. 2015 Plant lipid biology and biotechnology. Plant Cell Reports 34: 517-518. 96. Daniell, H., C.N. Stewart, Jr., B. Zhang 2015 Editorial (RNA Focus Issue). Plant Biotechnology Journal 13: 281. 97. Stewart, C.N., Jr. 2015. Songwriting and science. Science 349: 446. 98. Liu, W., C.N. Stewart, Jr. 2016. Plant systems biology. Pp. 155-180 in: Stewart, C.N., Jr.

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(Ed.) 2016 Plant Biotechnology and Genetics: Principles, Techniques and Applications, Second Edition, John Wiley & Sons, Hoboken, New Jersey: 406 pp. 99. Liu, W., B. Miki, C.N. Stewart, Jr. 2016. Promoters and marker genes. Pp. 233-261 in: Stewart, C.N., Jr. (Ed.) 2016 Plant Biotechnology and Genetics: Principles, Techniques and Applications, Second Edition, John Wiley & Sons, Hoboken, New Jersey: 406 pp. 100. Stewart, C.N., Jr. 2016. Analysis of transgenic plants. Pp. 293-310 in: Stewart, C.N., Jr. (Ed.) 2016 Plant Biotechnology and Genetics: Principles, Techniques and Applications, Second Edition, John Wiley & Sons, Hoboken, New Jersey: 406 pp. 101. Liu, W., C.N. Stewart, Jr. 2016. The future: advanced plant biotechnology, genome editing, and synthetic biology. Pp. 383-401 in: Stewart, C.N., Jr. (Ed.) 2016 Plant Biotechnology and Genetics: Principles, Techniques and Applications, Second Edition, John Wiley & Sons, Hoboken, New Jersey: 406 pp. 102. Stewart, C.N., Jr., C.N. Hatcher, M. Mazarei. 2016. Switchgrass genetics. Pp. 35-42 in Auburn Speaks. 103. Van Deynze, A., K.J. Bradford, H. Daniell, J.M. DiTomaso, N. Kalaitzandonakes, C.N. Stewart, Jr., S.H. Strauss, R. Van Acker. The science of gene flow in agriculture and its role in co-existence. Pp 1-12 in: Kalaitzandonakes, N., P. Philips, S. Smyth and J. Wesseler (eds.) The Coexistence of Genetically Modified, Organic and Conventional Foods: Government Policies and Market Practices, Springer, New York, 2016. 104. Stewart, C.N., Jr. 2016. Two sides of the research integrity coin. UTIA Office of Sponsored Programs Newsletter, October, p. 5. Abstracts 1. Stewart, C.N., Jr. 1990. Significance of insectivory upon sundew nutrition and growth. American Journal of Botany 77:1120. 2. Stewart, C.N., Jr. 1991. Vegetation analysis of five Appalachian peat bogs. Virginia Journal of Science 42:189. 3. Via, L.E., C.N. Stewart, Jr., and J.O. Falkinham, III. 1992. Utility of rapid amplified polymorphic DNA analysis in Mycobacterium avium epidemiology. Frontiers in Mycobacteriology: M. avium: The Modern Epidemic. 4. Stewart, C.N., Jr. 1993. Phylogeny of cranberry (Vaccinium macrocarpon) populations from random amplified polymorphic DNA (RAPD) data. Bulletin of the Association of Southeastern Biologists 40:149.

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5. Stewart, C.N., Jr. 1993. Measuring population molecular genetic variation using RAPD. Ecology 74:540. 6. Stewart, C.N., Jr. 1993. Cranberry clones in space and time. American Journal of Botany Suppl. 80:63-64. 7. Stewart, C.N., Jr., G. Rosson, B.W. Shirley and D.M. Porter. 1994. RAPD variation in rare and endangered Iliamna in Virginia, USA. American Journal of Botany Suppl. 81:63. 8. Stewart, C.N., Jr., M.J. Adang, J.N. All, H.R. Boerma, and W.A. Parrott. 1994. Characterization of Transgenic Soybean for Synthetic Bacillus thuringiensis CryIA(c). Proceedings of the Molecular and Cellular Biology of the Soybean 5th Biennial Conference. 9. Stewart, C.N., Jr., D.W. Wilde, Z.V. Magbanua, R.C. Davis, and W.A. Parrott. 1994. Optimization of a helium outflow gun for plant transformation. Proceedings of the Molecular and Cellular Biology of the Soybean 5th Biennial Conference. 10. Tucker, D., B. Seibt, M.A. Bailey, C.N. Stewart, Jr., H.R. Boerma, and W.A. Parrott. 1994. Proliferating embryo cultures on solid medium as an aid for suspension culture establishment, culture maintenance, and selection of transgenic cultures. Proceedings of the Molecular and Cellular Biology of the Soybean 5th Biennial Conference. 11. Stewart, C.N., Jr. M.J. Adang, J.N. All, H.R. Boerma, D. Tucker, W.A. Parrott. 1995. Transgenic insecticidal soybean. Proceedings of the International Symposium on Engineering Plants for Commercial Products and Applications, p. 45. 12. Parrott, W.A., C.N. Stewart, Jr., M.J. Adang, J.N. All, and H.R. Boerma. 1995. Insect resistance in transgenic soybean. Agron. Abstr. 95: 178. 13. Parrott, W.A., C.N. Stewart, Jr., and M. Anis. 1995. Embryogenesis for soybean transformation and possible factors affecting conversion and fertility. In Vitro Cellular and Developmental Biology-Animal. 31:29A. 14. Stewart, C.N., Jr., M.J. Adang, J.N. All, H.R. Boerma, and W.A. Parrott. 1995. Transgenic Soybean for Synthetic Bacillus thuringiensis CryIA(c). Plant Physiology Suppl. 108:22. 15. Raymer, P.L., C.N. Stewart, Jr., J.N. All, and S. Ramachandran, M.J. Adang, and W.A. Parrott. 1996. Transformation of canola with a synthetic Bacillus thuringiensis cryIAc insecticidal gene. Agronomy Abstracts, ASA, CSSA and SSSA 1996 Annual Meeting p.163. 16. O’Brien, A.D., M. Wachtel, M. McKee, B. Bodsworth, C.N. Stewart, Jr., and E. Dean-Nystrom.1996. Initmin: Candidate for an Escherichia coli O157:H7 anti-transmission vaccine,

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Cholera Conference, Nagasaki, Japan. 17. Stewart, C.N., Jr., D.R. Walker, M.J. Adang, J.N. All, H.R. Boerma, and W.A. Parrott. 1996. Evaluation and use of insect resistance in transgenic soybean. Proceedings of the Molecular and Cellular Biology of the Soybean 6th Biennial Conference. 18. Leffel, S.M., S.A. Mabon, and C.N. Stewart, Jr. 1996. Monitoring transgene escape using GFP. Conference Program: Eighth Annual Biotechnology Risk Assessment Conference, Ottawa, Canada. 19. Stewart, C.N., Jr., J.N. All, S. Ramachandran, and P.L. Raymer. 1996. Population dynamics of canola harboring an insecticidal transgene: the first generation. Conference Program: Eighth Annual Biotechnology Risk Assessment Conference, Ottawa, Canada. 20. Hiatt, J.A. L.J. Bruneau, and C.N. Stewart, Jr. 1997. Gene gun parameters for soybean transformation. Journal of the Elisha Mitchell Scientific Society 113:69. 21. Leffel, S.M., S.R. Branch, S.A. Mabon, and C.N. Stewart, Jr.1997. Using green fluorescent protein as an in vivo marker to track transgenic plants. Journal of the Elisha Mitchell Scientific Society 113:72. 22. Pulliam, D.A., M. Joari, and C.N. Stewart, Jr. 1997. Transgenic insecticidal tobacco. Journal of the Elisha Mitchell Scientific Society 113:73. 23. Stewart, C.N., Jr., S.M. Leffel, and S.A. Mabon. 1997. Whole plant fluorescence using green fluorescent protein. In Vitro Cellular and Developmental Biology-Animal 33:54A. 24. Warrick, W.B. S.A. Mabon, A. O’Brien, and C.N. Stewart, Jr. 1997. Edible vaccine for enterohemorrhagic O157:H7: a first step. Journal of the Elisha Mitchell Scientific Society 113:69. 25. Stewart, C.N. Jr., M.R Wachtel, S.A. Mabon, W.B. Warrick, and A.D. O’Brien. 1997. Expression of enterohemorrhagic Escherichia coli intimin in transgenic plants: an edible anti-EHEC O157:H7 vaccine candidate. Third International Symposium and Workshop on Shiga Toxin (Vercytotoxin)-Producing Escherichia coli Infections, p.119. 26. Stewart, C.N., Jr., S.M. Leffel, and S.A. Mabon. 1997. You light up my leaf (GFP in whole plants: visualization, measurement, and costs). Abstracts of the International Symposium on GFP, New Brunswick, NJ, p. 23. 27. Stewart, C.N., Jr. and D. Frere. 1997. Development of a field instrument to measure in plant green fluorescent protein (GFP). Abstracts of the International Symposium on GFP, New Brunswick, NJ, p. 36.

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28. Stewart, C.N., Jr.1998. Transgenic insecticidal crops: making them and making them behave. Symposium program: International Plant Molecular Biology, Lucknow, India p 12. 29. Ramachandran, S., G.D. Buntin, J.N. All, P.L. Raymer, and C. N. Stewart, Jr. 1998. Insect resistance and intraspecific competition of a transgenic canola in seed mixtures. 13th Biennial International Plant Resistance to Insects Workshop Proceedings in press. 30. Ramachandran, S., G.D. Buntin, J.N. All, P.L. Raymer, and C.N. Stewart, Jr. 1998. Resistance of transgenic canola to lepidopterous pests: an ecological perspective. Meeting Program: Southeastern Branch of the Entomological Society of America annual meeting, Chattanooga, TN in press. 31. O’Brien, A.D, L. Gansheroff, M. Wachtel H. Moon, B. Bodsworth, C. N. Stewart, Jr., and E. Dean-Nystrom. 1998. Intimin:Candidate Vaccine to Prevent Colonization of Cattle by Escherichia coli O157:H7. USUHS Canadian Society of Microbiologists program in press. 32. Stewart, C.N., Jr. 1998. Risks of insecticidal Bt transgenic oilseed rape (Brassica napus): hybridization, transgene persistence, and monitoring. VII International Congress of Ecology Proceedings (A. Farina, J. Kennedy, and V. Bossu (eds.) p. 406. 33. Halfhill, M.D., S.A. Mabon, H. Richards, B.K. Harper, and C.N. Stewart, Jr. 1999. GFP is a useful monitor for a second transgene in plants. Abstracts of the Second International Symposium on GFP, San Diego, CA. 34. Chamberlain, D., and C.N. Stewart, Jr. 1999. Mutagenized Aequorea GFP for high fluorescence in plants. Abstracts of the Second International Symposium on GFP, San Diego, CA. 35. Stewart, C.N., Jr. 1999. Applications of GFP in agbiotech. Abstracts of the Second International Symposium on GFP, San Diego, CA. 36. Tomlin, E.S. S.R. Branch, L. Hudson, C.N. Stewart, Jr. H. Gabe, S.V. Evola, and M.S. Wright. 1999. Screening of soybean cultivars for somatic embryo induction and regeneration capability from immature cotyledons. 1999 Congress on In Vitro Biology Addendum Booklet p. 14. 37. Halfhill, MD, Richards, HA, Millwood, RJ, Vallee, N, and Stewart, CN Jr. 2000. Introgression and persistence of an insecticidal transgene can be monitored by GFP. New Frontiers in Plant Science and Plant Biotechnology, Mar 5-9 Toulouse, France p. 45. 38. Vallee, N and Stewart, CN Jr. 2000 Development of a GMO soybean for deep rooting in acidic soils. New Frontiers in Plant Science and Plant Biotechnology, Mar 5-9 Toulouse, France

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p. 45. 39. Richards, Harold A., Matthew D. Halfhill, C. Neal Stewart, Jr. 2000. GFP Does not appear to pose a significant food allergen risk. World Congress on In Vitro Biology. San Diego, June 15, 2000. 40. Braun, Lorraine, Anne Légère, Peter Mason, Neal Stewart Jr., and Suzanne Warwick. 2000. Ecological risk of transgenic insect resistance under Canadian field conditions. Abstracts. Society for Invertebrate Pathology annual meeting, and Vth International Conference on Bacillus thuringiensis. August 2000, Guanajuato, Mexico 41. Stewart, C. Neal Jr., Matthew D. Halfhill, Harold A. Richards. 2000. GFP in plant biotechnology and agriculture. Eleventh International Symposium of Bioluminescence and Chemiluminescence abstract book p. 77, Asilomar, CA. 42. C. Neal Stewart, Jr. 2000. Consequences of gene flow from Bt canola. 2000. The Environmental Implications of Genetically Modified Plants with Insect Resistance Genes. Berne, Switzerland, Sept 29-30, 2000. 43. Warwick, Suzanne, Peter Mason, Lorraine Braun, Anne Légère, and Neal Stewart Jr. 2000. Ecological risk of transgenic insect resistance under Canadian field conditions. Abstracts. (Poster). Expert Committee on Weeds. Nov. 26 - 30. Banff, AB, Canada. 44. Mason, Peter, Lorraine Braun, Anne Légère, Neal Stewart, Suzanne Warwick. 2000. Ecological risk of transgenic insect resistance. Abstracts. (Poster) Joint Annual Meeting of the Entomological Society of Canada and the Entomological Society of America. December 2000, Montreal, Canada. 45. Mentewab Ayalew, Vinitha Cardoza, Brenda Kivela, and C. Neal Stewart, Jr. 2001. Self reporting space crops: edible biosensors. Bioastronautics Investigators’ Workshop January 17-19, 2001, Galveston, Texas, p. 362. 46. Stewart,C.N. Jr., Mentewab Ayalew, Kevin Kyle, and John DiBenedetto. 2001. Engineered plants as biosensors: plant and human pathogen detection. Abstract book, Defense Advanced Research Projects Agency, Biological Warfare Defense, Unconventional Pathogen Countermeasures, Principal Investigator Conference, San Diego, CA, pp. 20-21. 47. Halfhill, MD, Raymer, PL, Warwick, S, Gratton, W, Zhu, B, and Stewart, N. 2001. Tracking gene flow using GFP from canola (Brassica napus) to Brassica rapa and wild radish (Raphanus raphanistrum. Weed Science Society of America Abstracts 41:22. 48. Halfhill, MD and Stewart, N. 2001. Competition with transgenic weeds. Weed Science Society of America Abstracts 41:22.

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49. Stewart, C.N., Jr. 2001. Transgreenix. Connectivity Expo. p. 16. 50. Richards, H and C.N. Stewart, Jr. 2001. Edible vaccine against E. coli 0157:H7 produced in plants. Connectivity Expo. p. 72. 51. Markham, K.R., D. LaJeunesse and C.N. Stewart, Jr. 2001. Insect resistance encoding genes in ferns. Connectivity Expo. pp. 72-73. 52. Halfhill, MD and CN Stewart, Jr. 2001. Impact of an insecticidal Bt gene on transgenic canola and wild relatives. Meeting of a Working Group on Interspecific Gene Flow from Oilseed Rape to Weedy Species, Rennes, France 11-13 June 2001 p. 26. 53. Halfhill, M.D., Weissinger, A.K., Rufty, T.W., Stewart, C.N. 2001. Transgene expression and differential response to nitrate in transgenic canola and interspecific hybrids with Brassica rapa. Plant Biology 2001 (ASPB) Final Program pp.151-152. 54. Phuntumart, V., M. Ayalew, M. Kooshki, N. Stewart. 2001. Engineered plants as biosensors: plant pathogen detection using the PR1 promoter. NCBC Fifteenth Annual Plant Molecular Biology Retreat p. 8. 55. Kooshki, M. M. Ayalew, N. Stewart. 2001. Engineered plants as biosensors. NCBC Fifteenth Annual Plant Molecular Biology Retreat p. 8. 56. Hudson, L., C. N. Stewart, Jr. 2001. GFP-tagged pollen: a system to monitor pollen flow of transgenic plants. NCBC Fifteenth Annual Plant Molecular Biology Retreat p. 8. 57. Richards, H., N. Stewart. 2001. GFP does not pose a significant food safety risk. NCBC Fifteenth Annual Plant Molecular Biology Retreat p. 9. 58. Ayalew, M. Y. Ator, N. Stewart. 2001. GFP fusions with Bt genes as a method of monitoring gene expression. NCBC Fifteenth Annual Plant Molecular Biology Retreat p. 9. 59. Vallee, N., C.N. Stewart, Jr. 2001. Overexpression of citrate in plants for aluminum tolerance. NCBC Fifteenth Annual Plant Molecular Biology Retreat p. 9. 60. Halfhill, M.D., R.J. Millwood, A.Weissinger, C.N. Stewart, Jr. 2001. The effect of zygosity on GFP fluorescence in transgenic canola and hybrids with Brassica rapa. NCBC Fifteenth Annual Plant Molecular Biology Retreat p. 10. 61. Chalk, T.C., C.N. Stewart, Jr. 2001. The role of cyclin D in cell cycle progression of soybean somatic embryos. NCBC Fifteenth Annual Plant Molecular Biology Retreat p. 11.

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62. Mather, E., J. Goldburg, P. Jonmaire, C.N. Stewart, Jr., P. Elzer, and D.L. Huxsoll. 2002. Enhancing agricultural security. International Association for Food Protection Program and Abstract Book p. 143. 63. Cardoza, V., C. N. Stewart, Jr. 2003. Self reporting space crops: edible biosensors. Bioastronautics Investigator’s Workshop Abstract Volume p 33. Jan 13-15, 2003, Galveston, Texas. 64. Hudson, L., C.N. Stewart, Jr. 2003. GFP-transgenic pollen as a gene flow monitor. Introgression from Genetically Modified Plants into Wild Relatives and its Consequences. Programme & Abstract Book, Universiteit van Amsterdam, The Netherlands. Addendum. 65. Halfhill, M.D., C.N. Stewart, Jr. 2003. Gene flow and competition of transgenic hybrids under field conditions. Introgression from Genetically Modified Plants into Wild Relatives and its Consequences. Programme & Abstract Book, Universiteit van Amsterdam, The Netherlands. P. 138. 66. Stewart, C.N. Jr., M. Halfhill, P. Raymer, and S. Warwick. 2003. Transgene introgression and consequences in Brassica. Introgression from Genetically Modified Plants into Wild Relatives and its Consequences. Programme & Abstract Book, Universiteit van Amsterdam, The Netherlands. P. 59. 67. Patel, N, V. Cardoza and C. Neal Stewart Jr. 2003. Differential gene expression of Chlamydomonas reinhardtii in response to 2,4,6-trinitrotoluene (TNT) using microarray analysis. UT/ORNL Bioinformatics Summit 2003.

68. Ayalew, M., V. Cardoza, and C. N. Stewart, Jr. 2003 Genomic analysis of the response of Arabidopsis to trinitrotoluene as revelaed by microarrays. UT/ORNL Bioinformatics Summit 2003.

69. Patel, N. and C. Stewart Jr. 2003. Screening Arabidopsis thaliana and Chlamydomonas reinhardtii for their phenotypic responses to 2,4,6-trinitrotoluene (TNT). In Vitro Cellular and Developmental Biology 39:38-A.

70. Cardoza, V. and C. Stewart Jr. 2003. Increased transformation and rooting efficiencies in canola (Brassica napus L.) In Vitro Cellular and Developmental Biology 39:46-A.

71. Stewart, C.N., Jr. Halfhill, M.D., T.W. Rufty, A.Weissinger, P. L. Raymer, and S. I. Warwick. Competition, growth, and nitrogen use efficiency of transgenic weedy Brassica rapa. 2003. Plant Biology Final Program p. 196. ABSTRACT.

72. Halfhill, M. and N. Stewart. 2003. Introgressed canola x weed hybrid competition with crops: the case for genetic load. Biodiversity Implications of Genetically Modified Plants, Monte Verita, Ascona, Switzerland Abstract Book. P. 45.

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73. Mentewab, A, V. Cardoza, and C.N. Stewart, Jr. 2003. Promoter analysis of Arabidopsis genes differentially expressed upon exposure to trinitrotoluene. Abstract 49. Plant Genetics 2003 Abstract Book, Snowbird, Utah October 22-26, 2003. 74. Stewart, C.N., Jr. 2004. Phytosensors of detection of low vapor pressure chemicals. P 72 in: DHS HSARPA Strategies for the Detection of Low Vapor Pressure Chemicals Workshop April 6-7, 2004 Arlington. 75. Halfhill, M.D., J. Sutherland, G. Poppy, S.I. Warwick, A.K. Weissinger, T.W. Rufty, and C.N. Stewart, Jr. 2004. Not so super after all: introgressed insect resistance transgene in a canola weed tagged with genetic load. In Vitro Cellular and Developmental Biology 40:51-A. 76. Ayalew, M., and C.N. Stewart. 2004. Role of ABC transporter AtWBC19 in response to xenobiotics. Plant Biology 2004 Final Program. Pp. 72-73. 77. Poynton, C.Y. M.P. Elless, N. Vallee, M. Ayalew, and C.N. Stewart, Jr. 2004. Enhanced lead accumulation through transgenic expression of citrate synthase. Plant Biology 2004 Final Program. P. 54.

78. Richards, H.A., J. Stevens, C.N. Stewart, Jr. and F.A. Draughon. 2004. DNA-based microarray detection of Escherichia coli O157:H7. International Association for Food Protection Program and Abstract Book P.94.

79. Stewart, C.N., Jr. 2004. Applications of GFP-transformed plants. Calcium-Regulated Photoproteins and Green Fluorescent Proteins, August 29-September 3 2004 Program and Abstracts.

80. Halfhill, M.D., J.P Sutherland, G.M Poppy, S.I Warwick, T.W. Rufty, A.K. Weissinger, P.L. Raymer, and C.N. Stewart, Jr. 2004. Growth, fitness, and competitiveness of introgressed weedy Brassica rapa hybrids with a Bt transgene. ABIC Poster Abstracts, Cologne, Germany, p. 9.

81. Basu, C., M.D. Halfhill, J.N. Burris, B.M. Leckie, T.C. Mueller, J.N. Halfhill, and C.N. Stewart, Jr. 2005. Towards understanding the molecular mechanisms of glyphosate resistance in horseweed (Conyza canadensis), Weed Science Society of America Abstracts 45: 68-69.

82. Halfhill, M.D., H.-S. Moon, J.P Sutherland, G.M Poppy, S.I Warwick, T.W. Rufty, A.K. Weissinger, P.L. Raymer, and C.N. Stewart, Jr. 2005. Growth, fitness, and competitiveness of introgressed weedy Brassica rapa hybrids with a Bt transgene, Weed Science Society of America Abstracts 45: 67.

83. Basu, C., M.D. Halfhill, T.C. Mueller, and C.N. Stewart, Jr. 2005. Weed genomics: new weapons to defeat old enemies, Weed Science Society of America Abstracts 45: 68-69.

84. Abercrombie, J.M., M.R. Rao, M.D. Halfhill, L. Good, and C. Neal Stewart, Jr. 2005. Development of phytosensors for contaminant monitoring: utility of Arabidopsis thaliana

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microarrays to elucidate genetic responses to royal demolition explosive (RDX) and arsenic. Tennessee EPSCoR Environmental Summit Abstracts 2005.

85. Yuan, J., F. Chen, and C.N. Stewart, Jr. 2005. Weedy red rice and cultivated rice comparative genomics and proteomics. CPBR Annual Meeting abstracts. Washington, D.C. 86. Mentewab, A, B. Nelson, B. Mullin, Z.-M. Cheng and C.N. Stewart, Jr. 2005. Metallohistins for phytoremediation. Twenty-Second Annual Missouri Symposium 'Genomics and Beyond: Frontiers in Plant Biology'. April 27-30, 2005, Columbia, Missouri. 87. Stewart, C.N., Jr. 2005. Fluorescent proteins for transgenic plants. In Vitro Cellular and Developmental Biology 41:23-A. 88. Mentewab, A, and C.N. Stewart, Jr. 2005. A plant ABC transporter confers kanamycin resistance in transgenic plants. Plant Biology 2005 Final Program. P. 138.

89. Halfhill, M.D., H.S. Moon, J.P Sutherland, G.M Poppy, S.I Warwick, T.W. Rufty, A.K. Weissinger, P.L. Raymer, and C.N. Stewart, Jr. 2005. Growth, productivity, and competitiveness of introgressed weedy Brassica rapa hybrids selected for the presence of Bt cry1Ac and gfp transgenes. Proceedings of the USDA and EPA Biotechnology Risk Assessment Meeting Nov 30 2005.

90. Moon. H.S., L. Hudson, M.D. Halfhill, and C.N. Stewart, Jr. 2005 Expression of the green fluorescent protein (GFP) in pollen of canola (Brassica napus L.) and patterns of dispersion. Proceedings of the USDA and EPA Biotechnology Risk Assessment Meeting Nov 30 2005.

91. Mentewab, A, and C.N. Stewart, Jr. 2005. A plant ABC transporter confers kanamycin resistance in transgenic plants. Proceedings of the USDA and EPA Biotechnology Risk Assessment Meeting Nov 30 2005.

92. Luo, K., H. Duan, D. Zhao, X. Zheng, W. Deng, Y. Chen, C.N. Stewart, Jr., Y. Wu, X. Jiang, A.He, R. McAvoy, Y. Pei, and Y. Li. 2005 “GM-gene-deletor”: fused loxP-FRT recognition sequences dramatically improves efficiency of FLP or Cre recombinase on transgene excision from pollen and seed of tobacco plants. Proceedings of the USDA and EPA Biotechnology Risk Assessment Meeting Nov 30 2005.

93. Stewart, C.N., Jr. 2005. Introduction to gene flow and introgression biology. North Central Weed Meeting Symposium: Crop Gene Flow and the Occurrence and Consequence of Gene Introgression between Crops and Their Sexually Compatible Relatives, Dec 13 2005 (Abstract 75). 94. Stewart, C.N., Jr. and P.J. Tranel. 2006. Why genomics of weedy and invasive plants? Plant and Animal Genome XIV p. 95. 95. Yuan, J.S., D.R. Gealy, T. Stoming, C.N. Stewart, Jr. 2006 Identification of genes involved

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in cold resistance during seed germination and postgermination using comparative proteomics and genomics. Plant and Animal Genome XIV p.310. 96. Himanen S.J., A. Nissinen, A.-M Nerg, G.M. Poppy, C.N. Stewart Jr., and J.K. Holopainen. 2006. Inducible defence of Bt oilseed rape and global climate change. Abstract Book. Joint workshop of the IOBC / WPRS working groups: Induced Resistance in Plants against Insects and Diseases and Breeding for Resistance to Pests and Diseases. P35. 97. Yuan, J.S. and C. N. Stewart, Jr. 2006. Statistical modeling and analysis of low quality real-time PCR data. UT-ORNL-KBRIN Bioinformatics Summit 2006. 98. Himanen S., Nissinen A., Nerg A.-M., Poppy G.M., Stewart C.N. Jr & Holopainen J.K. Inducible defence of Bt oilseed rape and global climate change. IOBC conference "Breeding for inducible resistance against pests and diseases", April 27-29 2006, Heraklion, Crete, Greece. 99. Stewart, C.N. Jr., R.J. Millwood, J.S. Davis, K.P. Burris, A. Mentewab, J.N. Burris. 2006. Plant transformation and horizontal gene flow of a plant ABC transporter gene. In Vitro Cellular and Developmental Biology 42:22-A. 100. Yuan, J.S., D.R. Gealy, T. Stoming, and C. N. Stewart Jr. 2006. Identification of genes involved in cold resistance during seed germination and postgermination of rice using comparative proteomics and genomics. Plant Biology 2006 Final Program P. 147. 101. Rao, M.K.R, M. Halfhill, L. Good, N.Stewart. 2006. Transcriptional responses to RDX (Royal Demolition Explosive) as revealed by Arabidopsis microarrays. Plant Biology 2006 Final Program P. 129. 102. Himanen S., Nissinen A., Auriola S., Poppy G.M., Stewart C.N. Jr, Holopainen J.K. & Nerg, A.-M. 2006. Herbivore defence of genetically modified Brassica napus in future climate: effects of Bt transformation, elevated CO2, ozone and herbivory on leaf glucosinolates. The First International Conference on Glucosinolates, September 10-14 2006, Jena, Germany. 103. Yuan J.S., Wang, D., Chen, F. and Stewart, C.N. Jr. 2006. Statistical methods for efficiency adjusted real-time PCR quantification. Cambridge Healthcare Institute: Quantitative PCR, Microarrays, and Biological Validation Conference, Oct 23-24 2006, Cambridge, MA. 104. Cutulle, M, J.S. McElroy, and N Stewart. 2006. Identification of prodiamine-resistant annual bluegrass in Tennessee. ASA-CSSA-SSSA International Annual Meetings, November 12-16, 2006, Abstract 172-1. 105. Panthee, D.R.., J. Yuan, D.L. Wright, J.J. Marois, D. Mailhot and C.N. Stewart. 2006 Global gene expression analysis in soybean in response to the causal agent of Asian soybean rust (Phakopsora pachyrhizi Sydow). ASA-CSSA-SSSA International Annual Meetings, November 12-16, 2006, Abstract 1735a.

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106. Stewart, C.N. Jr., L.L. Good, M.D. Halfhill, M.R. Rao.2006. Potential molecular mechanisms of glyphosate resistance in Conyza canadensis. North Central Weed Meeting Symposium: Glyphosate Resistance in Weeds. 107. Yuan, J.S., P.J. Tranel, and C.N. Stewart, Jr. 2007. Gene families involved in non-target herbicide resistance. Plant and Animal Genome XV p.96. 108. Stewart, C.N. Jr., L.L. Good, M.D. Halfhill, M.R. Rao. 2007. Non-target glyphosate resistance gene candidates in Conyza canadensis. Plant and Animal Genome XV p.97. 109. Yuan, J.S., D.R. Gealy, T. Stoming, C.N. Stewart, Jr. 2007. Comparative genomics and proteomics studies of genes involved in low temperature germinability. Plant and Animal Genome XV p.163. 110. Rao, M.R., M.D. Halfhill, L. Good, N. Stewart. 2007. Transcriptional profiling of Arabidopsis in response to explosives. Plant and Animal Genome XV p.278. 111. Cutulle, M, J.S. McElroy, and N. Stewart. 2007. Identification of prodiamine-resistant annual bluegrass in Tennessee. Southern Weed Science Society Abstract Book, Nashville, TN, January 2007. 112. Stewart, C.N., Jr. M.D. Halfhill and S.I. Warwick. 2007. Transgene introgression from genetically modified crops to their wild relatives. Abstract Book, International Conference on Plant Transformation Technologies, Vienna, Austria, February 4-7 2007, p.28.

113. Li, Y., K. Luo, H. Duan, D. Zhao, Y. Pei, W. Deng, C.N. Stewart, Jr., R. McAvoy, and X. Jiang. 2007 “GM-gene-deletor”: fused loxP-FRT recognition sequences dramatically improve efficiency of FLP or Cre recombinase on transgene excision from pollen and seed of tobacco plants. Abstract Book, International Conference on Plant Transformation Technologies, Vienna, Austria, February 4-7 2007, p. 42.

114. Weems, C., L. Good, and C.N. Stewart, Jr. 2007. Encephalomyocardis viral (ECMV) internal ribosomal entry site mediated expression of multiple transgenes in tobacco and Arabidopsis thaliana. Abstract Book, International Conference on Plant Transformation Technologies, Vienna, Austria, February 4-7 2007, p. 68.

115. Good, L., M. Rudis, M.V. Matz, and C. N. Stewart, Jr. 2007. Gbr15, a novel fluorescent protein for plant transformation studies. Abstract Book, International Conference on Plant Transformation Technologies, Vienna, Austria, February 4-7 2007, p. 81.

116. Yuan, J.S., L. Good, N. R. Stewart, C. N. Stewart, Jr. 2007. Statistical tools for transgene copy number estimation based on real-time PCR. Abstract Book, International Conference on Plant Transformation Technologies, Vienna, Austria, February 2007, p. 89.

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117. Yuan, J.S., D. Wang, and C.N. Stewart, Jr. 2007. Statistical analysis of real-time PCR data II: efficiency adjusted real-time PCR quantification. Proceedings of the Fourth Annual Conference of the MidSouth Computational Biology and Bioinformatics Society, New Orleans, Louisiana, February 1st - 3rd, 2007 118. Yuan, J.S., N.R. Stewart, J. Burris, L. Good and C.N. Stewart, Jr. 2007 Statistical tools for transgene copy number estimation based on real-time PCR. Proceedings of the Fourth Annual Conference of the MidSouth Computational Biology and Bioinformatics Society, New Orleans, Louisiana, February 1st - 3rd, 2007

119. Yuan, J.S., C. Qian, R. Yuan, and C.N. Stewart, Jr. 2007. Microarray data transformation by dye concentration curve improves the ratio estimation. Proceedings of the Fourth Annual Conference of the MidSouth Computational Biology and Bioinformatics Society, New Orleans, Louisiana, February 1st - 3rd, 2007. 120. Abercrombie, J.M., L.L. Good, M.D. Halfhill, J. Yuan, M. R. Rao, A. Saxton, C. N. Stewart, Jr. 2007. Genomic analysis of arsenic in Arabidopsis thaliana. Southern Section American Society of Plant Biologists. March, 2007, Mobile, Alabama.

121. Yuan, J.S., D.R. Gealy, M. Campbell, N.R. Stewart, and C.N. Stewart, Jr.2007. Comparative functional genomics study of genes involved in low temperature germinability. Cold Spring Harbor Symposium on Plant Genomics p.70.

122. Joyce, B.L., M. Ayalew, B. Nelson, J. Abercrombie, E. Essington, B. Mullin, M.Z.M. Cheng and C. Neal Stewart, Jr. 2007 Metal-binding in plant overexpressing a metallohistin gene. Abstract P-3003. In Vitro Biology Meeting, Indianapolis, June 2007

123. Stewart, C.N. Jr., Good, L., M. Rudis, M.V. Matz., 2007. A new red fluorescent protein is effective for plant transformation studies. Abstract P-1006. In Vitro Biology Meeting, Indianapolis, June 2007.

124. Al-Ahmad, H, Kania, S.A., Trent, D.J. , Stewart Jr., C. N. 2007. Determination of plant nuclear DNA content by flow cytometry. Abstract 2723. Plant Biology and Botany Joint Congress 2007, Chicago.

125. Panthee, D., Yuan, J. S., Wright, D., Marois, J., Stewart Jr., C. N. 2007.Differential expression of genes in soybean in response to Asian soybean rust (Phakopsora pachyrhizi Sydow) is specific to the soybean growth stage. Abstract 2668. Plant Biology and Botany Joint Congress 2007, Chicago. 126. Millwood, R.J., T. Globus, T. Khromova, C. N. Stewart, Jr. 2007. Terahertz frequency spectroscopic measurements of Escherichia coli strains and plasmids. Abstract book of the Nanoelectric Devices for Defense and Security Conference, Arlington, VA.

Stewart, CV 75

127. Yuan, J.S., D.R. Gealy, N.R. Stewart, M. Campbell, C.N. Stewart, Jr. 2007. Comparative functional genomics study of genes involved in low temperature germinability. Rice Functional Genomics Conference, Tsukuba, Japan. 128. Yuan, J.S., N.R. Stewart, D.G. Hayes, C.N. Stewart, Jr. 2007. Rice as a model species for gene function study in biofuels and bioenergy research. Rice Functional Genomics Meeting, Tokyo. 129. Cutulle, M., J.S. McElroy, J.C. Sorochan, and C.N. Stewart. 2007. Comparison of four bioassay methods for evaluation of potential mitotic-inhibiting herbicide resistant Poa annua. ASA-CSSA-SSSA International Annual Meetings, November 4-8, 2007, Abstract 72-6.

130. Cutulle, M., J.S. McElroy, C. N. Stewart1, and J. S. Yuan. 2007. Identification of mutations in Poa annua alpha-tubulin conferring resistance to dinitroanilines. ASA-CSSA-SSSA International Annual Meetings, November 4-8, 2007, Abstract 170-5. 131. Panthee, D., Yuan, J. S., Wright, D., Marois, J., Stewart Jr., C. N. 2007. Growth stage specificity for differential gene expression in soybean in response to Phakopsora pachyrhizi Sydow. Third International Plant Pathology Conference; Nov 19-21, Lahore, Pakistan. 132. Millwood, R.J., CW. Rose, and C. N. Stewart, Jr. 2007 Measuring the effects of crop genetic load on productivity and fitness in weedy Brassica rapa (wild turnip) × Brassica napus (oilseed rape) hybrid populations. NCWSS Gene Flow Symposium abstract (71). 133. Moon, H.S. , J.N. Burris, R.J. Millwood, C.W. Rose, and C. N Stewart, Jr., 2007. Strategies to reduce transgene movement and persistence. NCWSS Gene Flow Symposium abstract (72). 134. Nasim G., Auge RM., Stewart NC., Toler HD., Rudis MS., Good L, Morton JB. 2007. Response of transgenic tobacco to Glomus intraradices under green house conditions. The Third International Conference on Plant Pathology, 19-21 November 2007, Organized by Pakistan Phytopathological Society at the Department of Mycology and Plant Pathology. 135 Nasim G., Stewart NC., Auge RM., Toler HD., Rudis MS., Good L, Morton JB. 2007. Root deformation induced by Glomus intraradices in some fluorescent tobacco lines, The Third International Conference on Plant Pathology, 19-21 November 2007, Organized by Pakistan Phytopathological Society at the Department of Mycology and Plant Pathology. (Poster presentation) 136. Al-Ahmad, H., S.A. Kania, D.J. Trent, C. N. Stewart, Jr. 2008. Determination of bioenergy plant DNA content by flow cytometry. Plant and Animal Genome XVI Abstracts P902. 137. Stewart, C.N., Jr., L. L. Good, J. S. Yuan, P.J. Tranel. 2008. Non-target glyphosate resistance: how does Conyza canadensis do it? WSSA abstracts.

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138. Stewart, N. R., S. Burris, C. N. Stewart, Jr, D Hayes, J.S. Yuan. 2008. Comparative genomics-based cloning of lignin biosynthesis genes for bioenergy. Exhibition of Undergraduate Research and Creative Achievement, University of Tennessee, April 2, 2008. 139. Yuan, J.S., N.R. Stewart, L. Kline, S.Y. Dai, R.L. Hettich, D.G. Hayes, C.N. Stewart, Jr. 2008 Genomic, transcriptomic, proteomic and functional analysis of candidate genes for bioenergy feedstock improvement. Thirtieth Symposium on Biotechnology for Fuels and Chemical, New Orleans, May 2008. Oral presentation 1-01, p. 44. 140. Good, LL, M Rudis, MV Matz, CN Stewart, Jr. 2008 A new red fluorescent protein for plant transformation studies from Porites porites: Gbr15. Abstract Book, Plants and People--Mutual Dependence in the 21st Century: PhD Symposium of the Zürich-Basel Plant Science Center-- ETH Zurich June 6 2008; p. 28. 141. Rao, MR, MD. Halfhill, L Good, CN Stewart, Jr. 2008. Plant transcriptional responses to RDX (Royal Demolition Explosive). Abstract Book, Plants and People--Mutual Dependence in the 21st Century: PhD Symposium of the Zürich-Basel Plant Science Center-- ETH Zurich June 6 2008; p. 39. 142 Moon HS, T Tzfira, Y Li, CN Stewart, Jr. 2008. Fail-safe biocontainment strategy in switchgrass by transgene excision from pollen using restriction enzymes and recombinase systems. Abstract Book, Plants and People--Mutual Dependence in the 21st Century: PhD Symposium of the Zürich-Basel Plant Science Center-- ETH Zurich June 6 2008; p. 35. 143. Millwood, RJ, CW. Rose, CN Stewart, Jr. 2008. Measuring the effects of crop genetic load on productivity and fitness in weedy Brassica rapa (wild turnip) × Brassica napus (oilseed rape) hybrid populations. Abstract Book, Plants and People--Mutual Dependence in the 21st Century: PhD Symposium of the Zürich-Basel Plant Science Center-- ETH Zurich June 6 2008; pp. 34-35. 144. Mazarei, M, H Al-Ahmad, MR Rudis, CN Stewart, Jr. 2008. Protoplast isolation and transient gene expression in switchgrass, Panicum virgatum L. Abstract Book, Plants and People--Mutual Dependence in the 21st Century: PhD Symposium of the Zürich-Basel Plant Science Center-- ETH Zurich June 6 2008; pp. 33-34.

145. Mazarei, M, I Teplova, MR Hajimorad, CN Stewart, Jr. 2008. Pathogen phytosensing: plants to report plant pathogens. Abstract Book, Plants and People--Mutual Dependence in the 21st Century: PhD Symposium of the Zürich-Basel Plant Science Center-- ETH Zurich June 6 2008; p. 19. 146. O’Neill, M., M. Bar-Peled, J. Bennetzen, R. Dixon, M. Hahn, U. Kalluri, D. Mohnen, R. Nelson, N. Stewart, Y. Tang, T. Tschaplinski, G. Tuskan, M. Udvardi, E. Uberbacher, W. York, Y. Xu, A. Darvill. 2008. Cell wall biosynthesis and the development of a sustainable biofuels industry: Overview of the BioEnergy Science Center (BESC) research program. 3rd Annual Plant

Stewart, CV 77

Cell Wall Biosynthesis Meeting, June 8-11, 2008, Asilomar Conference Center. 147. Mazarei, M, I Teplova, MR Hajimorad, CN Stewart, Jr. 2008. Pathogen phytosensing: plants to report plant pathogens. Nanotech conference. 148. Stewart, C.N., Jr. 2008. Regulating Transgenic Plants for Academic Research. Abstract P-18. In Vitro Biology World Congress, Tucson, June 2008. In Vitro and Developmental Biology 44:S24.

149. Joyce, B.L., C.N. Stewart, Jr. 2008. Promoter screening using Pteris vitatta protoplasts. AbstractP-3008. In Vitro Biology World Congress, Tucson, June 2008. Late submission abstracts p.8.

150. Nasim, G., R. Bajwa, R.M. Auge, N.C. Stewart, H.D. Toler, M. Rudis, L. Good, J. B. Morton, Why do arbuscular mycorrhizal fungi form hyphal platoons? International Conference of Plant Scientists, 21st -24th April 2008, University of Agriculture, Faisalabad. (Poster Presentation).

151. Yuan, J.S., N.R. Stewart, L. Kline, S.Y. Dai, R.L. Hettich, D.G. Hayes, C.N. Stewart, Jr. 2008 Genomic, transcriptomic, proteomic and functional analysis of candidate genes for bioenergy feedstock improvement. ASPB 2008, Merida, Mexico. 152. Stewart, C.N., Jr., M. Mazarei, D.A. Mann, M.R. Rudis, J. Burris, L.L.G. Abercrombie, H. Al-Ahmad. 2008. Swichgrass biotechnology: tools for switchgrass improvement. China-US Workshop: Bioenergy Consequences for Global Environmental Change. Beijing, October 15-18. program book p 28. 153. Mazarei, M., Al-Ahmad, H., Rudis, M.R., Stewart, Jr., C.N. 2008. Switchgrass protoplasts: isolation and transient gene expression. Bioenergy Science Center Annual Review, ORNL. Oct 14, 2008. 154. Mann, D.G.J., LaFayette, P.R., Abercrombie, L.L., Stewart, Jr., C.N. 2008. The pANIC vector set for switchgrass (Panicum virgatum L). Bioenergy Science Center Annual Review, ORNL. ORNL. Oct 14, 2008. 155. Moon, H.S., Tzfira, T., Li, Y., Stewart, Jr., C.N. 2008. Fail-safe biocontainment strategy in switchgrass by transgene excision from pollen using restriction enzymes and recombinase. Bioenergy Science Center Retreat, Chattanooga, TN Dec 1-3, 2008. 156. Mazarei, M., Al-Ahmad, H., Rudis, M.R., Stewart, Jr., C.N. 2008. Protoplast isolation and transient gene expression in switchgrass, Panicum virgatum L. Bioenergy Science Center Retreat, Chattanooga, TN Dec 1-3, 2008. 157. Mann, D.G.J., LaFayette, P.R., Abercrombie, L.L., Parrott, W.A., Stewart, Jr., C.N. 2008. The pANIC vector set for overexpression of transgenes and RNAi-mediated knockdown of

Stewart, CV 78

native genes in switchgrass (Panicum virgatum L). Bioenergy Science Center Retreat, Chattanooga, TN Dec 1-3, 2008. 158. Stewart, CN., Jr. WA Parrott, Z-Y Wang, J Zale. 2008. Biotechnology tools for switchgrass improvement. Bioenergy Science Center Retreat, Chattanooga, TN Dec 1-3, 2008. 159. Yuan, J.S., Y. Cao, G.R. Heck, T.J. Larosa, L Abercrombie, R.D Sammons, P.J. Tranel, C. N. Stewart, Jr. 2009. Dissecting the mechanisms of herbicide resistance with high-throughput cross-platform sequence analysis. Plant and Animal Genome Conference XVII Abstract W510

160. Stewart, C. N., Jr., Y. Peng, X. Wang, L. G. Abercrombie, M. D. Halfhill, M. R. Rao, D. H. Johnson, P. A. Wadl, D. R. Panthee, B. E. Scheffler, T. A. Rinehart, N. R. Stewart, J. S. Yuan, J. Hu, R. N. Trigiano, P. J. Tranel, R. D. Sammons, Y. Cao, T. J. Larosa, G. R. Heck. 2009 Molecular targets for glyphosate resistance in horseweed and phylogeography of spread. Weed Science Society of America Annual Meeting Orlando, February 2009. Abstract 252.

161. Stewart, C. N., Jr., C. W. Rose, R. J. Millwood, H. S. Moon, M. R. Rao, M. D. Halfhill, P. L. Raymer, S. I. Warwick, H. Al-Ahmad, J. Gressel. 2009. Genetic load and competition effects resulting from transgene flow from canola to field mustard: event specific introgression and transgenic mitigation. Weed Science Society of America Annual Meeting Orlando, February 2009. Abstract 199.

162. Stewart, C. N., Jr. 2009. Panel discussion: research ethics. Weed Science Society of America Annual Meeting Orlando, February 2009. 163. Zhou, X., C. N. Stewart Jr., P.J. Tranel, D. R. Sammons, J. S. Yuan 2009. Cross-platform sequence analysis package for next generation sequencing data, MidSouth Bioinformatics Conference, Starkville, MS, February, 2009.

164. Xu, Z, J. Hu, D. Zhang*, X. Ye, K. Reichel, N.R. Stewart, D. Mann, C. Doeppke, R. Sykes, M. Davis, M.Z.-M Cheng, N. Labbé, J. Bozell, C.N. Stewart, Jr., J.S. Yuan. 2009. Novel approaches for bioenergy feedstock improvement. MidSouth Bioinformatics Conference, Starkville, MS, February, 2009 165. Mann, D.G.J., P.R. LaFayette, L.L.G. Abercrombie, W. A. Parrott, C.N. Stewart, Jr. 2009. Development of a Gateway-compatible vector set for overexpression of transgenes and RNAi-mediated knockdown of native genes in switchgrass (Panicum virgatum. L). DOE-GTL Confab, Washington, DC, Feb 2009. 166. Burris, K.P and C. N. Stewart, Jr. 2009 Mega-nano structure for detecting foodborne pathogens. ARO PIs project meeting, Raleigh NC, March 20 2009. 167. Stewart, C.N., Jr., L.G. Abercrombie, H. Baxter, J. Burris, F. Chen, R.A. Dixon, R. Equi, III, M. Halter, H. Hisano, S. Hisano, Z. King, P. LaFayette, D.G.J. Mann, M. Mazarei, R. Nandakumer, R.S. Nelson, W.A. Parrott, C. Poovaiah, H. Ramanna, M. Rudis, Z.-Y. Wang, J.

Stewart, CV 79

Zale, J.S. Hawkins, R. Percifield, J.L. Bennetzen 2009. Switchgrass (Panicum virgatum) transformation for altered cell wall biosynthesis in the DOE Bioenergy Science Center. SIVB Annual Meeting, Orlando, FL June 2009. Abstract book PS-16, p S6. 168. Xu, Z, J. Hu, D. Zhang*, X. Ye, K. Reichel, N.R. Stewart, D. Mann, C. Doeppke, R. Sykes, M. Davis, M.Z.-M Cheng, N. Labbé, J. Bozell, C.N. Stewart, Jr., J.S. Yuan. 2009. Comparative and functional genomics analysis of lignin biosynthesis genes. Sun Grant Annual Conference Proceedings. 169. Mann DGJ, RJ Percifield, JS Hawkins, PR LaFayette, JN Burris, BL Joyce, WA Parrott, JL Bennetzen, CN Stewart, Jr. 2009. Isolation and expression of a switchgrass polyubiquitin promoter (PvUbi1) for overexpression in monocot and dicot transformation systems. Third BESC Science Retreat, Asheville, NC June 22-24. Poster 113. 170. Mann DGJ, PR LaFayette, LL Abercrombie, WA Parrott, and CN Stewart, Jr. 2009. UTK The pANIC vector set for overexpression of transgenes and RNAi-mediated knockdown of native genes in switchgrass (Panicum virgatum L). Third BESC Science Retreat, Asheville, NC June 22-24. Poster 114. 171. Mann DGJ, JN Burris, IM Swamidoss, K Reichel, R Sykes, N Labbe, M Davis, CN Stewart, Jr. 2009. Baseline biomass characterization and comparison of switchgrass (Panicum virgatum L) grown under various conditions. Third BESC Science Retreat, Asheville, NC June 22-24. Poster 115. 172. Burris JN and CN Stewart, Jr. 2009. An improved tissue culture system for switchgrass (Panicum virgatum L). Third BESC Science Retreat, Asheville, NC June 22-24. Poster 116. 173. Poovaiah CR, JN Burris, DGJ Mann, CN Stewart, Jr. 2009. Agrobacterium-mediated tranformation of switchgrass (Panicum virgatum L) and visual screening of transgenic callus using a novel red fluorescent protein. Third BESC Science Retreat, Asheville, NC June 22-24. Poster 117. 174. Gelineo-Albersheim I, Ajaya Biswal, Sivakumar Pattathil, Micahel G. Hahn, Jacquelyn Horner, Carolyn Moore, Mitra Mazaeri, Mary Rudis, Neil Stewart, Kristen Reichel, Mark Davis, and Debra Mohnen. 2009. Xylogenic suspension cultures as a means to study recalcitrance and secondary cell wall formation. Third BESC Science Retreat, Asheville, NC June 22-24. Poster 123. 175. Stewart, C.N., Jr. Environmental and regulatory sustainability of genetically engineered bioenergy feedstocks. Biofuels: Science & Innovation for Sustainable Development, San Francisco June 28-29, 2009

Stewart, CV 80

176. Stewart, C.N., Jr. J.N Burris, G.W.S. Wong, 1KP Consortium. 2009. 1KP: Sequencing one thousand plant transcriptomes American Society of Plant Biologists Abstract # P18011, July 18-22 2009, Honolulu. 177. Mazarei, M., H. Al-Ahmad, W. Liu, P.R. Arelli, V.R. Pantalone, C. N. Stewart, Jr. 2009. Gene expression profiling of a resistant and a susceptible soybean challenged with soybean cyst nematode, World Soybean Research Conference VIII, August 10-15, 2009, Beijing, China. 178. Vasudev, M, T.-C. Wu, M. Dutta, M.A. Stroscio,S. Guthrie, M. Reed, K. Burris, and C.N Stewart, Jr. 2009 Optoelectric signatures of DNA based hybrid nanostructures. Nanoelectronic Devices for Defense & Security Conference, Sept 28-Oct 2 2009, Fort Lauderdale.

179. Burris K, M. Stroscio, M. Vasudev, D. Wu, and C. N. Stewart, Jr. 2009. In vivo mega-nano detection of foodborne pathogens and transgenes using molecular beacon technology. Nanoelectronic Devices for Defense & Security Conference, Sept 28-Oct 2 2009, Fort Lauderdale.

180. Burris, J.N., C.N. Stewart, Jr. 2009. An improved tissue culture system for embyrogenic callus production and plant regeneration in switchgrass (Panicum virgatum L.). BESC External Review Poster Presentation, October 14-15, ORNL. 181. Peng, Y, L.L.G. Abercrombie, J.S. Yuan, R. D. Sammons, P.J. Tranel, C. N. Stewart, Jr. 2009. Characterization of de novo transcriptome for a non-model plant, Conyza canadensis (horseweed), using 454 pyrosequencing. International Conferences in Bioinformatics 2009, Atlanta, Georgia, November 12-14, 2009. 182. Mann, D and C. Stewart, Jr. 2009. Switchgrass biotechnology in the Bioenergy Science Center China-US Workshop on Bioenergy Plants, November 16-17 2009, Knoxville, Abstract Book p. 7. 183. Joyce, B., F. Chen., B. Bunting, J.M. Storey, N Zhao, T Kollner, J Degenhardt, H. Al-Ahmad, and C. N. Stewart, Jr. 2009. Introducing the ‘diesel trees’ (Copaifera spp.) as an alternative source of novel chemicals for biofuel. China-US Workshop on Bioenergy Plants, November 16-17 2009, Knoxville, Abstract Book p. 15. 184. Mazarei, M., H. Al-Ahmad, M.R. Rudis, B.L. Joyce, and C.N Stewart, Jr. 2009 Switchgrass cell suspension cultures: establishment, characterization, and application. China-US Workshop on Bioenergy Plants, November 16-17 2009, Knoxville, Abstract Book p. 17. 185. Moon, H.S. W. Wei, Y. Li, and C.N. Stewart, Jr. 2009. Biocontainment using pollen-active recombination systems. China-US Workshop on Bioenergy Plants, November 16-17 2009, Knoxville, Abstract Book p. 18. 186. Poovaiah, C. J. Burris, D. Mann, and C.N. Stewart, Jr. 2009. Monitoring switchgrass transformation with fluorescent proteins. China-US Workshop on Bioenergy Plants, November

Stewart, CV 81

16-17 2009, Knoxville, Abstract Book p. 19. 187. Stewart, C.N., Jr. Y. Peng, J.N Burris, G.W.S. Wong, 1KP Consortium. 2010. One Thousand Plant Transcriptome (1KP) project: a first look at extremophyte and weedy plant transcriptomes. Plant and Animal Genome Conference XVIII Abstract P007.

188. Tranel, P.J., C.W. Riggins, R.M. Lee, K.A. Thinglum,Y. Peng, C. N Stewart Jr. 2010. DNA pyrosequencing of the waterhemp (Amaranthus tuberculatus) genome and transcriptome. Weed Science Society of America Annual Conference, Denver Colorado.

189. Mann, D.J.G. et al (about 30 authors) 2010. Technology and transgenics for unparalleled improvements in switchgrass biomass quality. Annual GTL Conference, Crystal City, VA.

190. Mann, D.J.G. et al (about 30 authors) 2010. Technology and transgenics for unparalleled improvements in switchgrass biomass quality. Fifteenth Symposium on Biotechnology for Fuels and Chemical, 2010. 191. Lin, Jingyu, Mitra Mazarei, Prakash R. Arelli, Vincent R. Pantalone, C. Neal Stewart, Jr., Feng Chen. 2010. Identification and Characterization of Soybean Cyst Nematode-Induced Genes in Soybean. Southern Section American Society of Plant Biology Annual Meeting April 10-12, 2010, p. 11. 192. Balasubramaniam, Muthukumar, Blake L. Joyce, C. Neal Stewart Jr. 2010. Towards development of arsenic sensor ferns: Isolation of 5’UTRs from arsenic/metal transporter genes and current efforts on transformation of Pteris vittata. Southern Section American Society of Plant Biology Annual Meeting April 10-12, 2010, p. 20. 193. Burris, Kellie, P. M. Davidson, C.N. Stewart, Jr., F. Harte. 2010. Antimicrobial activity of Yerba Mate (Ilex paraguariensis) against plant pathogens. Southern Section American Society of Plant Biology Annual Meeting April 10-12, 2010, p. 21. 194. Liu, Wusheng, Murali R. Rao, Mitra Mazarei, C. Neal Stewart, Jr. 2010. De novo motif discovery from soybean cyst nematode-induced genes in soybean. Southern Section American Society of Plant Biology Annual Meeting April 10-12, 2010, p.22 195. Liu, Wusheng Mary R. Rudis, Virginia R. Sykes, Mitra Mazarei, C. Neal Stewart, Jr. 2010. In vivo analysis of synthetic promoters by agroinfiltration of tobacco leaves for pathogen phytosensing. Southern Section American Society of Plant Biology Annual Meeting April 10-12, 2010. p. 22. 196. Peng, Yanhui, Laura L.G. Abercrombie, Joshua S. Yuan, R. Douglas Sammons, Patrick J. Tranel, C. Neal Stewart, Jr. 2010. Characterization of de novo transcriptome for a non-model plant, horseweed (Conyza canadensis),using GS-FLX 454 pyrosequencing. Southern Section American Society of Plant Biology Annual Meeting April 10-12, 2010, p. 22.

Stewart, CV 82

197. Rao, Murali R., Hong S. Moon, C. Neal Stewart Jr., Mitra Mazarei. 2010. FLP/FRT recombination from yeast in transgenic plants for enhancing sensitivity of reporter genes in a phytosensing system. Southern Section American Society of Plant Biology Annual Meeting April 10-12, 2010, p. 23. 198. Joyce, B.L., B.G. Bunting, S. Lewis, J.S. Choi, J. Storey, F. Chen, C.N. Stewart, Jr. 2010. Fuel properties of a novel plant-based biofuel from Copaifera reticulata. 101st AOCS Annual Meeting & Expo. P. 82. 199. Cardinali, VCB, ACR Dias, TC Mueller, CN Stewart, Jr. PJ Christoffoteti. 2010 Shikimate accumulation in susceptible and resistant biotypes of hairy fleabane to determine the glyphosate response. Brazilian Weed Science Society Meeting. 200. Tatiana Globus, Boris Gelmont, C. Neal Stewart, Reginald J. Millwood

, Michael L.

Norton, Tatyana Khromova. 2010 Terahertz spectroscopic signature from short artificial DNA molecules with well controlled structure. ISSSR 2010, Sprngfield, MO.

201 Kellie Burris, Michael Stroscio, Donna Wu, Milana Vasudev, Reginald Millwood, and C. Neal Stewart, Jr. 2010. Real-time mega-nano detection of foodborne pathogens and transgenes using molecular beacon technology. ISSSR 2010, Sprngfield, MO. The 2010 International Symposium for Spectral Sensing Research (ISSSR). Abstract 210 202. King, Z, P. LaFayette, D. Mann, C.N. Stewart, Jr. W. Parrott. 2010 Construction and validation of the novel pANIC vector set by stable and transient expression using in vitro cultures of switchgrass (Panicum virgatum L.) and rice (Oryza japonica L.). 12th IAPB Congress, St. Louis, Abstract P090. 203. Burris, J, and CN Stewart, Jr. 2010. Improving switchgrass transformation using a novel media, LP9. 12th IAPB Congress, St. Louis, Abstract P024. 204. C. N. Stewart, Jr. and about 25 authors. 2010. Switchgrass biotechnology in the Bioenergy Science Center. 12th IAPB Congress, St. Louis, Abstract P241. 205 Stewart, C.N., Jr. M. Mazarei, W. Liu, M. Rao, M. Rudis, L. Abercrombie, D. Mann, V. Sykes. 2010. Phytosensors: plants to report plant pathogens and environmental contaminants. 12th IAPB Congress, St. Louis, Abstract S332. 206. Shen, Hui, Xian Zhi He, Charleson Poovaiah, Huanzhong Wang, Lisa Jackson, Neal Stewart, Fang Chen and Richard Dixon. 2010. cDNA cloning and functional characterization of a phenylpropanoid biosynthesis repressor- PvMYB1 in switchgrass (Panicum virgatum). Fourth BESC Science Retreat, Asheville, June 20-23 2010, poster 102. 207. Mann, DLG., PR LaFayette, LG Abercrombie, Z King, RJ Percifield, JS Hawkins, JN Burris, BL Joyce, JL Bennetzen, WA Parrott, and CN Stewart, Jr. 2010. Current status of the

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pANIC vector set for overexpression of transgenes and RNAi-mediated knockdown of native genes in switchgrass (Panicum virgatum, L). Fourth BESC Science Retreat, Asheville, June 20-23 2010, poster 111. 208. Burris, JN, DJG Mann, and CN Stewart, Jr. 2010 Factors affecting transformation of switchgrass. Fourth BESC Science Retreat, Asheville, June 20-23 2010, poster 112. 209. Poovaiah, C, DJG Mann, and CN Stewart, Jr. 2010. Isolation of PvSUS1, a membrane bound form of sucrose synthase for improvement of switchgrass as a biofuel feedstock. Fourth BESC Science Retreat, Asheville, June 20-23 2010, poster 113. 210. Mazarei M. H Al-Ahmad, MR Rudis, BL Joyce, and CN Stewart, Jr. 2010. Switchgrass cell suspension culture: establishment, characterization and application. Fourth BESC Science Retreat, Asheville, June 20-23 2010, poster 114. 211. Hisano, H. C. Fu, X Xiao, R Nandukumar, F Hardin, Y Ga, DGJ Mann, CN Stewart, Jr., F Chen, RA Dixon, Z-Y Wang. 2010. Genetic modification of C3H, F5H, and CCoAOMT genes in switchgrass. Fourth BESC Science Retreat, Asheville, June 20-23 2010, poster 117. 212. King, ZR, P. LaFayette, D. Mann, CN Stewart, Jr. and W Parrott. 2010 Construction and validation of the novel pANIC vector set by stable and transient expression using in vitro cultures of switchgrass (Panicum virgatum, L) and rice (Oryza japonica L.). Fourth BESC Science Retreat, Asheville, June 20-23 2010, poster 121. 213. Gelineo-Albersheim, I, et al. 2010. Arabidopsis and switchgrass xylogenic suspension cultures as a means to study recalcitrance and secondary cell wall formation. Fourth BESC Science Retreat, Asheville, June 20-23 2010, poster 126. 214. Gelineo-Albersheim, I, et al. 2010. Plant recalcitrance gene identification pipeline update. Fourth BESC Science Retreat, Asheville, June 20-23 2010, poster 127. 215. Hardin, X Xaio, DGJ Mann, N Stewart, Jr. F. Chen, RA Dixon, and Z-Y Wang. 2010. Down-regulation of hydroxycinnamoyl CoA: shikimate hydroxycinnamoyl transferase in switchgrass (Panicum virgatum). Fourth BESC Science Retreat, Asheville, June 20-23 2010, poster 135. 216. Globus, T, B. Gelmont, CN Stewart, Jr., RJ Millwood, M Norton, and T Khromova. 2010. THz spectroscopic signatures from short artificial DNA molecules, Oral presentation. ISSSR 2010, Sprngfield, MO. The 2010 International Symposium for Spectral Sensing Research (ISSSR). Abstract 101. 217. Stewart, C. N., Jr. 2010. Building the perfect bioenergy feedstock. IBS 2010 14th International Biotechnology Symposium and Exhibition (Abstract B.31.)

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218. Burris, K.P., Davidson, P.M., Stewart, Jr., C.N. and Harte, F. 2010. Antimicrobial activity of Yerba Mate (Ilex paraguariensis) against foodborne pathogens. 2010 Institute of Food Technologists Annual Meeting (July 17-20, 2010), Chicago, IL. 219. Mann DGJ, Abercrombie LL, Baxter H, Burris JN, Chen F, Chen X, Fu C, Halter M, Han J, Hardin F, Hawkins JS, Hernandez T, Hisano S, Hisano H, King Z, LaFayette PR, Lee Y,Mazarei M, Mielenz JR, Percifield RJ, Poovaiah CR, Ramanna H, Rudis M, Shen H, Torres-Jerez I, Xiao X, Zhang J, Bennetzen JL, Dixon RA, Nelson R, Parrott WA, Udvardi MK, Wang Z-Y, Zale J, Stewart, Jr. CN, Keller M. 2010. Technology and transgenics for unparalleled improvement in switchgrass biomass quality. 2010 Frontiers in Biorefining: Biobased Products from Renewal Carbon. St. Simons Island, GA. October 2010. 220. Bishaw K., II, K. Pitz, R. Manshardt, C. N. Stewart, Jr. 2010. Characterizing transgene flow in GE Carica papaya using the GUS marker. American Society of Horticultural Science Annual Meeting, Honolulu 221. Burris, K.P., P.M. Davidson, C. Neal Stewart, Jr., and F. Harte. 2010. Antimicrobial activity of Yerba Mate (Ilex paraguariensis) against plant pathogens. 2010 Southern Section of American Plant Biologists (April 10-12, 2010), Knoxville, TN. 222. Burris, K.P., M. Stroscio, T.-C. Wu, M. Vasudev, R.J. Millwood and C. Neal Stewart, Jr. 2010. Real-time mega-nano detection of foodborne pathogens and transgenes using molecular beacon technology. International Symposium on Spectral Sensing Research (June 21-24 2010), Springfield, MO. 223. Burris, K.P., P.M. Davidson, C. Neal Stewart, Jr., and F. Harte. 2010. Antimicrobial activity of Yerba Mate (Ilex paraguariensis) against foodborne pathogens. 2010 Institute of Food Technologists Annual Meeting (July 17-20, 2010), Chicago, IL. 224. Balasubramaniam, M. B. Joyce, D. Lee, M. Elless, C. N. Stewart, Jr. 2011. Arsenic sensor ferns: isolation of putative arsenic promoters and current transformation efforts of Pteris vittata. Plant and Animal Genome XIX. P758. 225. Stewart, C.N. Jr, M. Mazarei, W. Liu, M.R. Rao, M.R. Rudis, L.G. Abercrombie, D.G.J. Mann, Y. Peng, M. Balasubramaniam 2011. Phytosensors: Plants To Report Pathogens And Environmental Contaminants. Plant and Animal Genome XIX. W.296. 226. Balasubramaniam, M. B. Joyce, D. Lee, M. Elless, C. N. Stewart, Jr. 2011. Fern functional genomics. Plant and Animal Genome XIX. W383. 227. Moon, H.S., L.L. Abercrombie, S. Eda, R. Blanvillain, J.G. Thomson, D. Ow, C.N. Stewart, Jr. 2011. CinH-RS2 site-specific recombination system pollen-specific transgene excision in

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tobacco. Plant and Animal Genome XIX. P690. 228. Riggins, C.W., Y. Peng, C. N. Stewart, Jr., and P. J. Tranel. 2011. De novo transcriptome sequencing of waterhemp (Amaranthus tuberculatus) and its application for studies of herbicide target-site genes. Cambridge Healthtech X-Gen Expo and Conference, San Diego. 229. Li, Y., S. Lenaghan, J. Burris, C.N. Stewart, Jr., L. Parker, and M. Zhang. 2011. Plant-based Biosensors for Detecting Nanoparticle Effect to the Environment. IEEE Nano 2011 April, Portland, Oregon 230. Darmency H., Y. Liu, C. N. Stewart Jr., W, Wei, Z. Tang, K. Ma. 2011. Comparison of simulated and transgenic insect resistance in introgressed wild Brassica populations. Resistance 2011, Rothamsted. 231. Sykes, V.R., F.L. Allen, J.R. Mielenz, C. N. Stewart, Jr., M.T. Windham. 2011. Effect of Puccinia emaculata infection on ethanol production potential in Panicum virgatum. APS 2011 232. Bishaw K., II, K. Pitz, R. Manshardt, C. N. Stewart, Jr. 2010. Characterizing transgene flow in GE Carica papaya using the GUS marker. American Society of Horticultural Science Annual Meeting, Honolulu 233. Joyce, B., M. Balasubramaniam, D. Lee, M. Elless, C.N. Stewart, Jr. 2011. Agrobacterium-mediated and Biolistiv Bombardment Transformaiton of Pteris vittata: Tools for Functional Genomic and the Creation of Phytosensors. VIPCA International conference Plant Transformation Technologies II, Vienna, Austria. 234. Mann, D.G.J., P.R. LaFayette, Z. King, L.L. Abercrombie, W.A. Parrott, C.N. Stewart, Jr. 2011. The pANIC Vector Set for Overexpression of Transgenes and RNAi-Mediated Knockdown of Native Genes in Switchgrass (Panicum virgatum. L). VIPCA International conference Plant Transformation Technologies II, Vienna, Austria. 235. Moon, H.S., L.L. Abercrombie, S. Eda, R. Blanvillain, J.G. Thomson, D.W. Ow, C.N. Stewart, Jr. 2011. Trangene Excision in Pollen using a Codon Optimized Serine Resolvase CinH-RS2 Site-Specific Recombination System. VIPCA International conference Plant Transformation Technologies II, Vienna, Austria. 236. Stewart, Jr., C.N., D. Mann, and BESC Investigators (USA). 2011. Plants to Power: Bioenergy to Fuel the Future. VIPCA International conference Plant Transformation Technologies II, Vienna, Austria. 237. Stewart, Jr., C.N., Y. Peng. 2011. Transcriptome Sequencing to Understand the Molecular Basis of Weediness. VIPCA International conference Plant Gene Discoveries Technologies, Vienna, Austria.

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238. Joyce, B., M. Bunce, V. Jeliazkov, S. Lewis, B. Bunting, C.N. Stewart, Jr. 2011. Novel Plant-derived Biodiesel Chemicals: Using a Rapid Screening Process and Transcriptomics to Identify Biochemical Pathways of Interest. VIPCA International conference Plant Gene Discoveries Technologies, Vienna, Austria. 239. Hardin, F., H. Hisano, X. Xaio, D. Mann, C.N. Stewart, Jr. Z. Wang. 2011. Down-regulation of hydroxycinnamoyl CoA: shikimate hydroxycinnamoyl transferase in switchgrass (Panicum virgatum). Number 104. 5th BESC Science Retreat, Chattanooga, TN. 240. Mann, D., Z. King, W. Liu, B. Joyce, R. Percifield, J. Hawkins, P. LaFayette, B. Artelt, J. Burris, M. Mazarei, J. Bennetzen, W. Parrott. C. N. Stewart, Jr. 2011. Switchgrass (Panicum virgatum L.) polyubiquitin gene (PvUbi1 and PvUbi2) promoters for use in plant transformation. Number 108. 5th BESC Science Retreat, Chattanooga, TN. 241. Mazarei, M., D. Mann, M. Halter, M. Rudis, C.N. Stewart, Jr. 2011. Switchgrass biomass measurement for use in the BESC biomass characterization workflow activities. Number 114. 5th BESC Science Retreat, Chattanooga, TN. 239. Wuddineh, W., D. Mann, C.N. Stewart, Jr. 2011. Genetic transformation of switchgrass mediated by Agrobacterium tumefaciens and optimization of the regenerability of non-regenerable callus. Number 122. 5th BESC Science Retreat, Chattanooga, TN. 240. Baxter, H., D. Mann, M. Mazarei, N. Labbe, C. Fu, Z. Wang, and C.N. Stewart, Jr. 2011. Filed evaluation of transgenic switchgrass (Panicum virgatum L.) with reduced lignin content for biomass productivity, biochemical composition, saccharification efficiency, and ethanol fermentation. Number 127. 5th BESC Science Retreat, Chattanooga, TN. 241. Poovaiah, C., A. Biswal, D. Mann, J. Willis, H. Baxter, D. Mohnen, C.N. Stewart, Jr. 2011. Molecular characterization of switchgrass overexpressing foxtail millet pectin acetylesterase 2. Number 129. 5th BESC Science Retreat, Chattanooga, TN. 242. Gelineo-Albersheim, I., H. Shen, F. Chen, J. Horner, A. Biswal, K. Hunt, S. Pattathil, Z Hao, M. Hahn, M. Mazarei, M. Rudis, U. Avci, C.N.Stewart, Jr. C. Doeppke, A. Ziebell, R. Sykes. M. Davis, R. Dixon, D. Mohnen. 2011. Switchgrass Xylogenic Suspension Cultures as a Means to Study Recalcitrance and Secondary Cell Wall Formation. Number 133. 5th BESC Science Retreat, Chattanooga, TN. 243. Willis, J., M. Halter, D. Mann, C. Poovaiah, H. Baxter. W. Wuddineh, J. Burris, L. Abercrombie, F. Chen. C. Fu, F. Hardin, J. Hawkins, T. Hernandez, S. Hisano, H. Hisano, Z. King, P. LaFayette, Y. Lee, M. Mazarei, R. Percifield, H. Ramanna, M. Rudis, H. Shen, I. Torees-Jerez, X. Xiao, J. Zhang, J. Bennetzen. R. Dixon, R. Nelson, W. Parrot. M. Udvardi, Z. Wang, C.N. Stewart, Jr. 2011. Current status of the BESC switchgrass transformation pipeline.

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Number 135. 5th BESC Science Retreat, Chattanooga, TN. 244. Burris, J., C.N. Stewart, Jr. 2011. Production of liquid cultures Panicum virgatum through recurrent selection for regeneration and transformation. Number 141. 5th BESC Science Retreat, Chattanooga, TN. 245. Rice, J.H., R. Mundell, R. Millwood, O. Chambers, H. Davies, C.N. Stewart, Jr. 2011. Towards Development of a Sterile Tobacco Hybrid for Pharmaceutical Production. Number P-3004. In Vitro Cellular and Developmental Biology. Volume 47. pp 540. 246. C.N. Stewart, Jr., M. Mazarei, W. Liu, M. Rao, M. Rudis, L. Abercrombie, D. Mann, Y. Peng, M. Balasubramaniam. 2011. Phytosensors: Plants to report pathogens and environmental contaminants. Plant and Animal Genomes XIX Conference. San Diego, CA. 247. Moon HS, L. Abercrombie,S. Eda, R. Blanvillain, J. Thomson, D. Ow, C.N. Stewart, Jr. 2011. Transgene excision in pollen using a codon optimized serine resolvase CinH-RS2 site-specific recombination system. Plant Transformation Technology II, Vienna, Austria. 248. Higginbotham, K., K.P. Burris and C. Neal Stewart, Jr. 2011. Natural botanical extracts of antimicrobial agents against foodborne- and plant-pathogens. 15th Annual Exhibition of Undergraduate Research and Creative Achievement (March 31, 2011), Knoxville, TN. 249. Burris, K.P., P.M. Davidson, C. Neal Stewart Jr., and F. Harte. 2011. Aqueous extracts of yerba mate (Ilex paraguariensis) as a natural antimicrobial agent against Escherichia coli O157:H7 in apple juice. 2011 Institute of Food Technologists Annual Meeting (June 11-14, 2011), New Orleans, LA. 250. Burris, K.P., R. Millwood, and C. Neal Stewart, Jr.. 2011. Biomolecular architectures molecular biology: Molecules for THz spectroscopy and molecular beacon technology. ARO-DTRA PIs project review meeting, Washington, DC, July 13-14, 2011. 251. Orlando CHAMBERS, J. Hollis Rice, Richard Mundell, Reginald J. Millwood, C. Neal Stewart and H. Maelor Davies, "Field Evaluation of an Interspecific Hybrid as a Containment Strategy for Plant-Made Pharmaceutical Applications in Tobacco". Presentation at the 65th Tobacco Science Research Conference, September 18-21, 2011, Lexington, KY. 252. Fu, C., R. Sunkar, C. Zhou, H. Shen, J. Zhang, J. Matts, J. Wolf, D.G.J. Mann, C.N. Stewart Jr., Y. Tang, and Z.-Y. Wang. 2012. Overexpression of miR156 for switchgrass improvement. In Vitro Cellular and Developmental Biology. Society for In Vitro Biology Meeting; Bellevue, Washington. 48:26 253. Poovaiah, C.R., H. Shen, W.A. Wuddineh, J. Mielenz, T.J. Tschaplinski, C. Neal Stewart,

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Jr., F. Chen, and R.A. Dixon. 2012. Overexpression of PvMYB4 in Switchgrass Leads to a Three-fold Increase in Ethanol Production without Pretreatment. In Vitro Cellular and Developmental Biology. Society for In Vitro Biology Meeting; Bellevue, Washington. 48:60-61 254. Halter, M.C., J. Mitchell, D.G.J. Mann, M. Balasubramaniam, E.T. Nilsen, and C.N. Stewart. 2012. Improvement of Switchgrass C4 Photosynthetic Efficiency for Increased Biomass Production. In Vitro Cellular and Developmental Biology. Society for In Vitro Biology Meeting; Bellevue, Washington. 48:64 255. Stewart, Jr., C.N., H.S. Moon, J.M. Abercrombie, L.L. Abercrombie, R.J. Millwood, C.R. Poovaiah, and S. Eda. 2012. Restriction Enzyme Mediated Pollen Ablation Promises to be an Effective Species-independent Male Sterility and Bioconfinement Tool. In Vitro Cellular and Developmental Biology. Society for In Vitro Biology Meeting; Bellevue, Washington. 48:68 256. Lenaghan, S.C., J.N. Burris, L. Xia, C. Neal Stewart, Jr. 2012. Identification of a Novel Protein-based Nanoparticle Secreted from English Ivy. Biomedical Engineering Society. Atlanta, Georgia 257. Peng,Y., L.G. Abercrombie, P. Lee, S. Agarwal, G. Schoene, M.N. Rao, C. Neal Stewart, Jr. 2012. Rapid evolution of herbicide resistance in the weed Conyza canadensis (horseweed). The International Conference Molecular Ecology. The International Conference Molecular Ecology. Vienna, Austria. 258. Y. Peng, C. Neal Stewart, Jr. 2012. Using Genomic Approaches to Study an Economic Important Weedy Plant Conyza canadesis. Plant and Animal Genome XX; San Diego, CA. P0043. 259. Joyce, B.L., S. Liu, H. Al-Ahmad, P. Ranjan, X. Chen, X. Sun, J.C. John, G.K-S. Wong, F. Chen, J.S. Yuan, C. Neal Stewart, Jr. 2012. Investigating the novel sesquiterpene biosynthesis pathway in Copaifera officinalis, ‘the diesel tree’, through next-generation de novo transcriptome sequencing and functional genomics. Plant and Animal Genome XX. San Diego, CA. P0822. 260. Liu, W., M. Mazarei, M. Fethe, J. Lin, P. Arelli, V. Pantalone, C. Neal Stewart, Jr. 2012. From Bioinformatics to Experimental Biology: Looking for de novo Inducible Motifs in Soybean Genome during a Compatible Interaction between Soybean and Soybean Cyst Nematode. Plant and Animal Genome XX. San Diego, CA. P0437. 261. Balasubramaniam, M., B.L. Joyce, C. Neal Stewart, Jr., M. Elless. 2012. Stable transformation, a strategic tool for fern functional genomics. Plant and Animal Genome XX. San Diego, CA. W464. 262. Higginbotham, K., K.P. Burris, C. Neal Stewart, Jr. 2012. Antimicrobial activity of Hibiscus sabdariffa aqueous extracts against Escherichia coli O157: H7 in microbiological medium and

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ultra high temperature milk. Institute of Food Technologies. Las Vegas, NV. 035-28. 263. Willis, J.D., J-L. Jurat Fuentes, C. Neal Stewart, Jr. 2012. Overexpression of an insect cellulase in switchgrass for improved sugar release. American Society of Plant Biologists. Austin, TX. P04021. 264. Willis, J.D., A.G. Collins, J-L. Jurat Fuentes, C. Neal Stewart, Jr. 2012. Overexpression of an insect cellulase in switchgrass for improved sugar release. Entomological Society of America. Knoxville, TN. 265. Grant, J., J.D. Willis, C. Neal Stewart, Jr. 2012. Functional analysis of a putative membrane-bound switchgrass endo-β-1,4-glucanase in Escherichia coli. UTK EUReCA. Knoxville, TN. 267. Liu, W., M. Mazarei, M.H. Fethe, J. Lin, P.R. Arelli, V.R. Pantalone, C. Neal Stewart, Jr. (2012). From Bioinformatics to Experimental Biology: Looking for de novo Inducible Motifs in Soybean Genome during a Compatible Interaction between Soybean and Soybean Cyst Nematode. Plant and animal genome, San Diego, CA, USA.

268. Baxter, H.L., M. Mazarei, N. Labbe, L.M. Kline, M.T. Windham, D.G.J. Mann, C. Fu, J.N. Grant, C.R. Poovaiah, H. Shen, W.A. Wuddineh, A. Ziebell, M.F. Davis, F. Chen, T.J. Tschaplinski, J.R. Mielenz, Z-Y. Wang, R.A. Dixon, C. Neal Stewart, Jr. (2012). Field-based experiments on low-lignin switchgrass as a feedstock for lignocellulosic biofuel production. SunGrant National Conference, Science for Biomass Feedstock Production and Utilization, New Orleans, LA, USA, (Proceedings paper).

269. Baxter, H.L., M. Mazarei, N. Labbe, L.M. Kline, M.T. Windham, D.G.J. Mann, C. Fu, A. Ziebell, R. Sykes, C. Doeppke, G. Turner, S. Decker, M. Tucker, M. Rodriguez, M.F. Davis, J.R. Mielenz, Z-Y. Wang, C. Neal Stewart, Jr. (2012). First year field results of altered lignin COMT-knockdown switchgrass. SunGrant National Conference, Science for Biomass Feedstock Production and Utilization, New Orleans, LA, USA.

270. Baxter, H.L., M. Mazarei, N. Labbe, L.M. Kline, M.T. Windham, D.G.J. Mann, C. Fu, A. Ziebell, R. Sykes, C. Doeppke, G. Turner, S. Decker, M. Tucker, M. Rodriguez, M.F. Davis, J.R. Mielenz, Z-Y. Wang, C. Neal Stewart, Jr. (2012). First year field results of altered lignin COMT-knockdown switchgrass. Bioenergy Science Center (BESC) Retreat, Chattanooga, TN, USA.

271. Willis, J.D., J. Smith, R. Percifeld, J-Y. Zhang, S. Nagachinta, C.R. Poovaiah, H.L. Baxter, E. Haynes, D.G.J. Mann, M. Mazarei, J.L. Bennetzen, M. Udvardi, M. Bar-Peled, C. Neal Stewart, Jr.(2012). Alteration of switchgrass UAM1 via over-expression, knockdown, and over-expression of non-active catalytic domain for improved sugar release. Bioenergy Science Center (BESC) Retreat, Chattanooga, TN, USA.

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272. Willis, J.D., A.G. Collins, J.N. Grant, D.G.J. Mann, M. Mazarei, C. Neal Stewart, Jr. (2012). Cloning and overexpression of two plant glycosyl hydrolases involved in cell wall synthesis for reduced recalcitrance in switchgrass. Bioenergy Science Center (BESC) Retreat, Chattanooga, TN, USA.

273. Wuddineh, W.A., M. Mazarei, J-Y. Zhang, M. Udvardi, C. Neal Stewart, Jr. (2012). Identification and overexpression of three putative transcription factors namely SHINE, bHLH and KN1 in switchgrass for improvement of biomass characteristics for biofuel. Bioenergy Science Center (BESC) Retreat, Chattanooga, TN, USA.

274. Poovaiah, C.R., H. Shen, W.A. Wuddineh, M. Mazarei, M. Rodriguez, C. Hamilton, J.R. Mielenz, T.J. Tschaplinski, F. Chen, R.A. Dixon, C. Neal Stewart, Jr. (2012). Untreated PvMYB4 overexpressing switchgrass yields ethanol as much as hot water pretreated control. Bioenergy Science Center (BESC) Retreat, Chattanooga, TN, USA. 275. Burris, K.P., P.M. Davidson, C. Neal Stewart, Jr., and F. Harte. 2012. Novel botanical extracts as bactericidal agents against methicillin-resistant Staphylococcus aureus and Staphylococcus pseudintermedius. Institute of Food Technologists Annual Meeting (June 25-28, 2012), Las Vegas, NV. 276. Higginbotham, K., K.P. Burris and C. Neal Stewart, Jr. 2012. Antimicrobial activity of Hibiscus sabdariffa aqueous extracts against Escherichia coli O157: H7 in microbiological medium and UHT milk. 16th Annual Exhibition of Undergraduate Research and Creative Achievement (March 28, 2012), Knoxville, TN. 277. Roach, A., K.P. Burris and C. Neal Stewart, Jr. 2012. Efficacy of yerba mate washes against Escherichia coli in sprouts. 16th Annual Exhibition of Undergraduate Research and Creative Achievement (March 28, 2012), Knoxville, TN. 278. Jones, C.M., K.P. Burris and C. Neal Stewart, Jr. 2012. Antimicrobial activity of yerba mate extracts in milk. 16th Annual Exhibition of Undergraduate Research and Creative Achievement (March 28, 2012), Knoxville, TN. 279. Burris, J.N., C. Gorman, and C. Neal Stewart, Jr. 2012. Selection of switchgrass (Panicum virgatum L.) “Performer” clones for use in tissue culture and transformation. Bioenergy Science Center (BESC) Retreat, Chattanooga, TN, USA. 280. Burris, J.N., S. Lenaghan, M. Zhang, and C. Neal Stewart, Jr. 2012. Biofabrication for nanoparticle production using English ivy (Hedera helix). American Society of Plant Biologists annual meeting. Austin, TX. P02042 281. Stewart, C.N., Jr. et al. 2013 Field performance of transgenic switchgrass for cell wall

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traits. XXI International Plant and Animal Genome Conference (January 12-16). San Diego, CA. W536. 282. Stewart, C.N., Jr. 2013. Enhancing plant transgene expression with TAL effectors. XXI International Plant and Animal Genome Conference (January 12-16). San Diego, CA. 283. Peng. Y., Z. Lai, T. Lane, M. Okada, M. Jasieniuk, L. Rieseberg, C. Neal Stewart, Jr. 2013. De novo genome assembly for the economically important weed Conyza canadensis from multiple integrated next-generation sequencing data. XXI International Plant and Animal Genome Conference (January 12-16). San Diego, CA. W786. 284. Johnson, C. R., M. Nageswara-Rao, Y. Peng, C. Neal Stewart, Jr. 2013. Molecular characterization of herbicide resistance in horseweed (Conyza canadensis L.). In: Exhibition of Undergraduate Research and Creative Achievement (EURēCA), (March 18-19). Knoxville, TN. (College of Agricultural Sciences and Natural Resources-Best poster award winner). 285. Hanson, M., M. Nageswara-Rao, S. Agarwal, C. Kwit, C. Neal Stewart, Jr. 2013. Diversity and genetic structure of switchgrass populations. In: Exhibition of Undergraduate Research and Creative Achievement (EURēCA) (March 18-19). Knoxville, TN. (Building Research Interest and Developing Global Engagement (BRIDGE) Grant award winner). 286. Willis, J.D., A. G. Collins, J-L. Jurat-Fuentes, and C. Neal Stewart, Jr. 2013. Overexpression of TcEG1, an insect Endoglucanase, in switchgrass for improved sugar release. Annual meeting of Society for In-Vitro Biology (SIVB) (June 15-19). Providence, RI. 287. Collins, A. G., J. D. Willis, and C. Neal Stewart, Jr. 2013. Effects of carbohydrate sources and chelating agents on the growth of switchgrass suspensions cultures. Annual meeting of Society for In-Vitro Biology (SIVB) (June 15-19). Providence, RI. 288. Grant, J. N., J. D. Willis, C. Rempe, C. Neal Stewart, Jr. 2013. Comparison of Switchgrass Cell Wall Components with an Overexpressed Putative Switchgrass Endoglucanase. Annual meeting of Society for In-Vitro Biology (SIVB) (June 15-19). Providence, RI. 289. Higginbotham, K. L., K. P. Burris, C. Neal Stewart, Jr. 2013. Antimicrobial activity of Hibiscus sabdariffa extracts against Escherichia coli O157:H7 and Salmonella in apple cider. International Food Technologists (IFT) meeting (July 13-16). Chicago, IL. PN 204-25.

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290. Junming Wang, Rongjian Ye, David Miller, C. Neal Stewart, and Ted Sammis Online tool for GR horseweed (Conyza canadensis) gene flow. Annual ASABE conference abstract 1594252.

291. Willis, J. D., J. Smith, S. Nagachinta, C. Doepke, R. Sykes, R. Percifeld, J. Zhang, C. R. Poovaiah, H. Baxter, E. Haynes, D. G .J. Mann, M. Mazarei, A. Ziebell, E. Gjersing, J. Bennetzen, M. Udvardi, M. Bar-Peled, C. Neal Stewart, Jr. 2013. Alteration of UAM1 by knockdown, over-expression, and over-expression of non-catalytic domain in switchgrass affect lignin and sugar release. Bioenergy Science Center (BESC) Retreat (July 20-23). Chattanooga, TN. 292. Willis, J. D., L Kline, S. M. Allen, P. Bhattacharya, A. G. Collins, J. N. Grant, N. Labbe, and C. Neal Stewart, Jr. 2013. Development of switchgrass (Panicum virgatum L.) transformable cell suspension culture and a screening system for rapid assessment of cell wall genes for improved biomass for biofuels. ARPA-E PETRO Industrial meeting (September 12-13). St. Louis, MO. 293. Wang, J., R. Ye, Y. Peng, C. Neal Stewart, Jr. D. R. Miller, T. W. Sammis. 2013. Online tool for GR horseweed (Conyza canadansis) gene flow. ASABE Annual International Meeting (July 21-24). Kansas City, Missouri. PN 131594252 294. Peng, Y., S. Allen, C. Neal Stewart, Jr. 2013. Comparative transcriptome analysis for glyphosate resistant mechanisms in horseweed (Conyza canadensis) biotypes. The International Conference on Intelligent Biology and Medicine (August 11-13). Nashville, TN. 295. Nageswara-Rao, M., M. Hanson, S. Agarwal, C. Neal Stewart, Jr., C. Kwit. 2013. Population genetics and diversity analysis of natural and agronomic switchgrass populations. In: Switchgrass II Conference (September 18-19). Madison, WI. 296. Stewart, C.N., Jr. 2013 Synthetic plant biotechnology tools for precise transgene expression. EuroBiotech 2013, Fifth Central European Congress of Life Sciences, Krakow, Poland, 8-11 October 2013 Abstract Book, PL1. 297. Alexander, L., Mazarei, M., Baxter, HL., Haynes, E., Dixon, RA., Wang, Z-Y., Stewart, Jr., CN. 2013. Hybridization of downregulated-COMT transgenic switchgrass lines and field selected switchgrass for improved biomass traits. Switchgrass II conference (September 10-12). Madison, WI. 298. Alexander, L., Mazarei, M., Baxter, HL., Haynes, E., Dixon, RA., Wang, Z-Y., Stewart, Jr., CN. 2013. Development of hybrid switchgrass for biofuel production. IBSS annual meeting (September 25-27). Raleigh, NC.

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299. Baxter, HL., Mazarei, M., Labbe, N., Kline, LM., Hamilton, C., Windham, MT., Cheng, Q., Mann, DGJ., Fu, C., Ziebell, A., Sykes, R., Doeppke, C., Turner, G., Decker, S., Tucker, M., Rodriguez, M., Davis, MF., Mielenz, JR., Wang, Z-Y., Stewart, Jr., CN. 2013. Two-year field evaluation of altered lignin COMT-knockdown switchgrass. Bioenergy Science Center (BESC) Retreat (July 22-25). Chattanooga, TN.

300. Wuddineh, WA., Mazarei, M., Zhang, J-Y., Ziebell, A., Gjersing, E., Sykes, R., Doeppke, C., Turner, G., Decker, S., Tucker, M., Davis, MF., Udvardi, M., Stewart, Jr., CN. 2013. Identification and overexpression of three putative transcription factors SHINE, bHLH and KN1 in switchgrass for improvement of biomass characteristics for biofuel. Bioenergy Science Center (BESC) Retreat (July 22-25). Chattanooga, TN.

301. Wuddineh, WA., Mazarei, M., Zhang, J-Y., Poovaiah, C., Mann, DGJ., Ziebell, A., Gjersing, E., Sykes, R., Doeppke, C., Turner, G., Decker, S., Tucker, M., Davis, MF., Udvardi, M., Stewart, Jr., CN. 2013. Overexpression of GA2-oxidase (GA2ox) in switchgrass for improved plant architecture and reduced recalcitrance. Bioenergy Science Center (BESC) Retreat (July 22-25). Chattanooga, TN.

302. Poovaiah, CR., Yee, KL., Rodriguez, M., Shen, H., Mazarei, M., Baxter, HL., Ziebell, A., Gjersing, E., Sykes, R., Doeppke, C., Turner, G., Decker, S., Tucker, M., Davis, MF., Mielenz, JR., Dixon, RA., Stewart, Jr., CN. 2013. First year field results of PvMYB4-overexpressing transgenic switchgrass. Bioenergy Science Center (BESC) Retreat (July 22-25). Chattanooga, TN. 303. Poovaiah, CR., Abercrombie, L., Mazarei, M., Stewart, Jr., CN. 2013. GATEWAY compatible binary vector set for testing promoters in monocots. Bioenergy Science Center (BESC) Retreat (July 22-25). Chattanooga, TN.

304. Halter, MC., Biswal, AK., Mazarei, M., Baxter, HL., Millwood, RJ., Wolfe, B., Mohanty, SS., King, Z., Ziebell, A., Gjersing, E., Sykes, R., Doeppke, C., Turner, G., Decker, S., Tucker, M., Yee, KL., Rodriguez, M., Parrott, WA., Davis, MF., Mielenz, JR., Mohnen, D., Stewart, Jr., CN. 2013. Field evaluation of GAUT4-knockdown switchgrass for improved biofuel traits. Bioenergy Science Center (BESC) Retreat (July 22-25). Chattanooga, TN.

305. Halter, MC., Fu, C., Mazarei, M., Baxter, HL., Millwood, RJ., Wolfe, B., Ziebell, A., Gjersing, E., Sykes, R., Doeppke, C., Turner, G., Decker, S., Tucker, M., Yee, KL., Rodriguez, M., Davis, MF., Mielenz, JR., Wang, Z-Y., Stewart, Jr., CN. 2013. Field evaluation of miRNA156-overexpressing switchgrass for improved biofuel traits. Bioenergy Science Center (BESC) Retreat (July 22-25). Chattanooga, TN. 306. Burris, J., Fu, C., King, Z., Alexander, L., Mazarei, M., Wang, Z-Y., Parrott, WA., Stewart, Jr., CN. 2013. Field evaluation of switchgrass clones used in tissue culture and transformation systems. Bioenergy Science Center (BESC) Retreat (July 22-25). Chattanooga, TN..

Stewart, CV 94

307. Burris, J., Gorman, C., Stewart, Jr., CN. 2013. Selection of elite switchgrass Performer clones for higher transformation efficiency. Bioenergy Science Center (BESC) Retreat (July 22-25). Chattanooga, TN.

308. Yee, KL., Rodriguez, M., Thompson, OA., Poovaiah, CR., Biswal, AK., Shen, H., Baxter, HL., Mazarei, M., Dixon, RA., Stewart, Jr., CN., Mohnen, D., Mielenz, JR. 2013. Comparative evaluation of the bioconversion potential of three different transgenic switchgrasses. Bioenergy Science Center (BESC) Retreat (July 22-25). Chattanooga, TN. 309. Baxter, H., Mazarei, M., Fu, C., Cheng, Q., Ziebell, A., Gjersing, E., Sykes, R., Windham, M., Davis, M., Dixon, R., Wang, Z-Y, and Stewart, Jr., CN. 2014. Field experiments of seven switchgrass TOP Lines. Year 7 Annual DOE/BRC Review, Oak Ridge National Laboratory, Tennessee. 310. Baxter, H., Mazarei, M., Poovaiah, C., Shen, H, Fu, C., Biswal, A., Yee, K., Rodriguez, M., Thompson, O., Ziebell, A., Gjersing, E., Sykes, R., Davis, M., Mielenz, J., Davison, B., Mohnen, D., Dixon, R., Wang, Z-Y, and Stewart, Jr., CN. 2014. Transgenic switchgrass field experiments of TOP Lines. BioEnergy Science Center (BESC) Science Retreat, Chattanooga, Tennessee. 311. Baxter, H., Mazarei, M., Fu, C., Cheng, Q., Ziebell, A., Gjersing, E., Sykes, R., Windham, M., Dixon, R., Wang, Z-Y, and Stewart, Jr, CN. 2014. Monthly time-course field analysis of COMT-knockdown switchgrass: gene expression, lignification, recalcitrance, and rust susceptibility. BioEnergy Science Center (BESC) Science Retreat, Chattanooga, Tennessee. 312. Burris, K.P., S. C. Lenaghan, and C. Neal Stewart, Jr. 2014. High throughput transformable liquid plant cell culture system. ARPA-E PETRO Program Industry Meeting, Research Triangle Park, NC. 313. Rempe, C.S., B. Goodrich, H.L. Woo, D.K. Gosnell, K.P. Burris, T.J. Tschaplinski, C.N. Stewart. 2014. Computational ranking of plant compounds based on antimicrobial class against methicillin-resistant Staphylococcus aureus. Conference on Small Molecule Science, Williamsburg, VA. 314. Collins, A.G., Pigna, G, Lenaghan, S.C., and Stewart Jr., C.N. 2014. Somatic embryogenesis of single-cell switchgrass suspension cultures. ARPA-E PETRO Industry Meeting, Raleigh, NC. Poster. 315. Lin J, Mazarei M, Zhao N, Rudis M, Pantalone VR, Arelli PR, Chen F, Stewart CN Jr. 2014. Overexpression of a soybean salicylic acid methyltransferase gene confers resistance to soybean cyst nematode. Oral presented at 2014 World Forum on Biology - Joint Meeting of the Society for In Vitro Biology and the Society for Cryobiology, Savannah, GA.

Stewart, CV 95

316. Liu, W., Schmidt, D.A., Millwood, R.J., Rudis, M.R., Mazarei, M., Chesnut, J.D., Potter, C.J., Stewart, C.N., Jr. 2014. Synthetic promoters and transcription factors for precise gene expression in plants. Synthetic Biology Congress, London, UK. 317. Liu, W., Schmidt, D.A., Millwood, R.J., Rudis, M.R., Mazarei, M., Chesnut, J.D., Potter, C.J., Stewart, C.N., Jr. 2014. Synthetic promoters for targeted transgene activation in plants. 2014 World Forum on Biology – Joint Meeting of the Society of In Vitro Biology and the Society of Cryobiology, Savannah, Georgia. 318. Liu, W., Willis, J., Peng, Y., Millwood, R.J., Sang, Y., Mazarei, M., Stewart, C.N., Jr. 2104. Plant synthetic biology tools to transform bioenergy feedstocks. The 36th Symposium on Biotechnology for Fuels and Chemicals. Clearwater Beach, FL 319. Wuddineh, W.A., Mazarei, M., Zhang, J.-Y., Poovaiah, C., Mann, D., Ziebell, A., Gjersing, E., Sykes, R., Davis, M, Udvardi, M., Stewart, Jr., CN. Jr. 2014. Overexpression of gibberellic acid 2-oxidase (PvGA 2ox) in switchgrass for improved plant architecture and reduced biomass recalcitrance. Bioenergy Science Center (BESC) Retreat, Chattanooga, TN, USA. 320. Wuddineh, W.A., Mazarei, M., Zhang, J.-Y., Poovaiah, C., Mann, D., Ziebell, A., Gjersing, E., Sykes, R., Davis, M, Udvardi, M., Stewart, Jr., CN. Jr. 2014.Identification and overexpression of two putative transcription factors (PvSHINE and PvKN1) in switchgrass for improved biomass characteristics for biofuel. Bioenergy Science Center (BESC) Retreat, Chattanooga, TN, USA. 321. Mason, A., Mazarei, M., Escamilla-Trevino, L., Biswal, A., Li, G., Holladay, S., Mohnen, D., Tang, Y., Dixon, R., Wang, Z-Y., Stewart, Jr., CN., Gjersing, E., Chen, J., Nelson, R. 2014. TOP Line identification, growth and analysis: Using initial BESC findings for advanced basic and applied studies. Year 7 Annual DOE/BRC Review, Oak Ridge National Laboratory, TN, USA. 322. Poovaiah, C., Yee, K., Rodriguez, M., Shen, H., Mazarei, M., Baxter, H., Ziebell, A., Gjersing, E., Sykes, R., Doeppke, C., Turner, G., Decker, S., Tucker, M., Davis, D., Mielenz, J., Dixon, R., Stewart, Jr., CN., Gilna, P. 2014. First Year Field Results of PvMYB4-overexpressing Transgenic Switchgrass and Other Multiple Lines. DOE Contractors-Grantees Annual PI Meeting, Arlington, VA, USA. 323. Hatcher, C., Alexander, A., Mazarei, M., Haynes, E., Baxter, H., Hamilton, C., Labbe, N., Dixon, RA., Wang, Z-Y., Stewart, Jr., CN. 2014. Development of hybrid switchgrass for improved biomass traits and field assessment. IBSS Annual Meeting, University of Tennessee, Knoxville, TN. 324. Wuddineh, WA., Mazarei, M., Zhang, J-Y., Poovaiah, CR., Mann, DGJ., Ziebell, A., Turner, GB., Sykes, RW., Decker, SR., Davis, MF., Udvardi, MK., Stewart, Jr., CN. 2015.

Stewart, CV 96

Identification and overexpression of gibberellic acid 2-oxidase (GA2ox) in switchgrass (Panicum virgatum L.) for improved plant architecture and reduced biomass recalcitrance. SunGrant National Conference, Auburn, AL. 325. Rambani, A., Rice, JH., Maze, M., Mazarei, M., Staton, ME., Pantalone, VR., Stewart, Jr., CN., Hewezi, T. 2014. Genome-wide DNA methylation of the compatible interaction between soybean and soybean cyst nematode, Heterodera glycines. Annual Scientific Meeting of the American Society of Plant Biologists (ASPB), Portland, Oregon, USA. 326. Yee, K., Rodriguez Jr, M., Thompson, OA., Muchero, W., Chen, J., Gunter, LE., Jawdy, S., Poovaiah, C., Shen; H., Mazarei, M., Engle, NL., Ziebell, A., Sykes, R., Gjersing, E., Fu, C., Wang, Z-Y., Davis, MF., Tschaplinski, T., Stewart, Jr., CN., Dixon, RA., Tuskan, G., Mielenz, JR., Davison, BH. 2014. Fermentation performance of field-grown natural variant and transgenic feedstocks. Symposium on Biotechnology for Fuels and Chemicals, Clearwater Beach, FL, USA. 327. Rempe, CS., Burris, KP., Stewart, Jr. CN. 2014. SERMACS: Predicting antimicrobial mechanism of a compound using mass spectra. Nashville, TN. 328. Ye, RJ., Peng, YH, Wang, JM., Millwood, RJ., Stewart, Jr.CN. 2014. Development of fluorescence protein marked horseweed (Conyza canadensis). World Forum on Biology-Joint Meeting of the Society for In Vitro Biology and the Society for Cryobiology, Savannah, Georgia. 329. Huang, HY., Wang, JM., Ye, RJ., Peng, YH., Stewart, Jr. CN., Dubois, D. 2014. Measurements and modeling of atmospheric gene flow in horseweed. JGI meeting. Marriott Hotel, Walnut Creek, California. 330. Burris, K.P., S. C. Lenaghan, and C. Neal Stewart, Jr. 2015. High throughput transformation for switchgrass cell cultures. Plant and Animal Genome XXIII Conference (January 10-14, 2015), San Diego, CA. 331. Wuddineh, W., Mazarei, M., Turner, GB., Sykes, RW., Decker, SR., Davis, MF., Stewart, Jr., CN. 2015. Identification and molecular characterization of switchgrass AP2/ERF transcription factor superfamily, and overexpression of PvERF001 for improvement of biomass characteristics for biofuel. Switchgrass III: Prairie and Native Grass International Conference. Knoxville, TN. 332. Grant, JN., Burris, JN., Willis, JD. Lenaghan, SC., Juenger, TE., Stewart, Jr., CN. 2015. Tissue and Suspension Culture of Panicum hallii. Switchgrass III: Prairie and Native Grass International Conference. Knoxville, TN. 333. Collins, AC., Burris, KP., Dlugosz, EM., Burris, JN., Lenaghan, SC., Stewart, Jr. CN. 2015. Comparison of two Panicum mesophyll protoplast isolation and transformation systems. Switchgrass III: Prairie and Native Grass International Conference. Knoxville, TN.

Stewart, CV 97

334. Pigna, G., Dlugosz, EM., Lenaghan, SC., and Stewart, Jr. CN. 2015. Cryopreservation of switchgrass (Panicum virgatum) protoplasts. Switchgrass III: Prairie and Native Grass International Conference. Knoxville, TN. 335. Millwood, RJ., Ye, R., Nageswara-Rao, M., Burris, JN., Johnson, CR., Hanson, M., Kwit, C., Stewart, Jr. CN. 2015. Pollen-mediated gene flow in switchgrass (Panicum virgatum L.). Switchgrass III: Prairie and Native Grass International Conference. Knoxville, TN. 336. Hatcher, C., Alexander, L., Mazarei, M., Haynes, E., Baxter, H., Hamilton, C., Labbe, N., Dixon, RA., Wang, Z-Y., Stewart, Jr. CN. 2015. Development of hybrid switchgrass for improved biomass traits and field assessment. Switchgrass III: Prairie and Native Grass International Conference. Knoxville, TN. 337. Baxter, H., Mazarei, M., Fu, C., Cheng, Q., Windham, MT., Davis, MF., Dixon, RA., Wang, Z-Y., and Stewart, Jr. CN. 2015. Monthly time course field analysis of COMT-knockdown switchgrass: gene expression, lignification, recalcitrance, and rust susceptibility. Switchgrass III: Prairie and Native Grass International Conference. Knoxville, TN. 338. Johnson, CR., Millwood, RJ., Sang, Y., Wang, Z-Y., and Stewart, Jr CN. 2015. Reproduction and bioconfinement of miR156 transgenic switchgrass. Switchgrass III: Prairie and Native Grass International Conference. Knoxville, TN. 339. Stewart, Jr. CN. 2015. Grassroots: the history of switchgrass biotechnology in Tennessee. Switchgrass III: Prairie and Native Grass International Conference. Knoxville, TN. 340. Pigna, P., Allen, SM., Rudis, MR., Willis, JD., Lenaghan, SC., King, Z., Parrott, WA., and Stewart, Jr. CN. 2015. Development of an Efficient Cell Suspension Culture System for Protoplast Production, Rapid Cell Wall Biosynthesis, and Shoot Regeneration in Switchgrass (Panicum virgatum L.). Switchgrass III: Prairie and Native Grass International Conference. Knoxville, TN. 341. Willis, JD., Mazarei, M., Grant, JN., Collins, AG., Kline, L., Turner, G., Decker, S., Sykes, R., Davis, M., Labbe, N., Jurat-Fuentes, J-L., and Stewart, Jr., CN. 2015. Heterologous expression of TcEG1 beetle cellulase in switchgrass improves sugar release efficiency with no affect to biomass yield. Switchgrass III: Prairie and Native Grass International Conference. Knoxville, TN.