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Chapter 23, 24, 26Lecture Outline
Human Microflora, Nonspecific and Specific Host Defenses, and Immunizations
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Human Microbiota Humans colonized by many microbes
Bacteria, archaea, fungi, protzoa, and viruses
Normal flora “Commensal” (mutualistic) organisms Resident Transient
Microbe populations change constantly Vary with type of tissue, condition
pH, moisture, other microbes present Intestinal flora varies with nutrient uptake
Can cause disease if reach abnormal location or if epithelial defense is impaired
Microbiology: An Evolving Science © 2009 W. W. Norton & Company, Inc. 3
Distribution of Microbiota
Gram+
Gram-Gram+
Gram-
Gram- Gram+
Microbiology: An Evolving Science © 2009 W. W. Norton & Company, Inc. 4
Body Site Lead Bacteria
Skin Staphylococcus spec.
Nose/pharynx Neisseria, viridans streptococci
Stomach Sparsely populated
Small intestine Bifidobacterium spec., Clostridium spec.
Large intestine Bacteroides spec., E. coli
Vagina Lactobacillus spec.
Urethra Mycobacterium spec.
Microbiology: An Evolving Science © 2009 W. W. Norton & Company, Inc. 5
Human Microbiota: Skin Skin is difficult to colonize
Dry, salty, acidic, protective oils Gram+ tolerate salt and dry environment well
1012 microbes in moist areas Scalp, ears, armpits, genital and anal areas
Disease involvement: Propionibacterium acnes degrades skin oil
Free fatty acid induce inflammation Inflamed sebaceous glands Causes acne
Microbiology: An Evolving Science © 2009 W. W. Norton & Company, Inc. 6
Human Microflora: Nose, Mouth Nasopharynx and Oropharynx
Many Gram+ Staphylococcus species Streptococcus species
Also Gram- Neisseria spec. Fusobacterium spec.
Disease involvement: Viridans streptococci
can enter bloodstream and cause endocarditis Streptococcus mutans
Can form biofilm around teeth Plaque Cause of gum disease
Microbiology: An Evolving Science © 2009 W. W. Norton & Company, Inc. 7
S. mutans
Viridans Streptococci
Microbiology: An Evolving Science © 2009 W. W. Norton & Company, Inc. 8
Human Microbiota: Stomach Very high acidity
Few microbes survive
Disease involvement Helicobacter pylori
Survive at pH 1 Burrow into protective mucous Cause of ulcers, cancer
Loss of acidity = achlorhydria Caused by malnourishment Allows pathogen growth Example: Vibrio cholerae survive
Pass through stomach
Microbiology: An Evolving Science © 2009 W. W. Norton & Company, Inc. 9
Human Microbiota: Intestine Vast majority of human microbiota
109-11 cells/ cm3
Feces consists primarily of bacteria
Disease development Urinary tract infection Sepsis
Microbiology: An Evolving Science © 2009 W. W. Norton & Company, Inc. 10
Human Genitourinary Microbiota
Kidney and bladder are sterile Urethra and vagina are populated Vagina
Acidic secretions prevent pathogens Lactobacillus acidophilus in vagina
Composition is influenced by hormonal cycle
Microbiology: An Evolving Science © 2009 W. W. Norton & Company, Inc. 11
Important Contributions of Human Microbiota to Human Health Production of antimicrobials hampers
colonization by pathogenic microbes Degradation of nutrients Vitamin production Modulation of immune system
Microbiology: An Evolving Science © 2009 W. W. Norton & Company, Inc. 12
Probiotics Oral uptake of microbes to the
benefit of human health Gram-positive bacteria Must be able to survive stomach
and small intestine Lactobacillus Bifidobacterium
Microbiology: An Evolving Science © 2009 W. W. Norton & Company, Inc. 13
Risks of Microbiota Opportunistic pathogens
Surface breach allows bacterial entry Immunocompromised hosts
E.g., Bacteroides fragilis E.g., Clostridium difficile
Gas gangrene caused by Bacteroides after intestinal surgery
Microbiology: An Evolving Science © 2009 W. W. Norton & Company, Inc. 14
Host Defenses
General mechanism Innate Immunity Adaptive immunity
Microbiology: An Evolving Science © 2009 W. W. Norton & Company, Inc. 15
General Host Defenses Physical barriers to infection
Skin Keratin Dead skin cells, washing, remove
attached cells Mucous
Trap, destroy pathogens Mucous layers slough off, removed Cilia remove microbes from lungs
Chemical barriers to infection Acidic pH: stomach, skin, vagina
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Overview of the Immune System Innate immunity
Widely present in natureNatural immunityDefense system
functional at birthPreformed or available
within hours after infection
Pattern recognition
Adaptive immunity In higher vertebratesAcquiredAvailable within daysSpecificityMemory
Proliferation and clonal expansion
Microbiology: An Evolving Science © 2009 W. W. Norton & Company, Inc. 17
Key Molecules of Our Immune System Antimicrobial peptides and polypeptides
Natural peptide antibiotics Make pores in microbial membranes
Lysozyme Peptidoglycan hydrolase Can make membrane pores too
Complement Makes pores in microbial membranes Enhances phagocytosis Alerts the host
Antibodies Neutralize Block Enhance phagocytosis
Innate Immunity
Adaptive Immunity
Microbiology: An Evolving Science © 2009 W. W. Norton & Company, Inc. 18
Key Cells of Our Immune System
Epithelial cells Leukocytes
White blood cells
Microbiology: An Evolving Science © 2009 W. W. Norton & Company, Inc. 19
Epithelial Cells
Innate immune system Line all body surfaces Equipped with receptors that recognize microbial
products (Toll-like receptors, TLRs) LPS Peptidoglycan
Produce antimicrobial peptides Produce cytokines that alert the host
Epithelial Cell Defense
TLR
Microbial Products(LPS, PG, etc)
Antimicrobial Peptides
Cytokines
TLR: Toll-like receptor (pattern recognition)LPS: lipopolysaccharidePG: peptidoglycan
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Leukocytes Neutrophils and monocytes
Engulf and destroy bacteria and fungi Monocytes are immature cells that eventually
differentiate into macrophages and dendritic cells
Basophils and eosinophils Release toxins to poison parasites
Natural killer cells Eliminate virus infected cells
Lymphocytes T cells: modulate specific immune response (T
helper cells) and kill infected host cells (cytotoxic T cells)
B cells: produce antibodies to bind foreign antigens
granules with toxin
InnateImmunity
AdaptiveImmunity
Microbiology: An Evolving Science © 2009 W. W. Norton & Company, Inc. 22
Main Steps of Phagocytosis Adhesion Engulfment (ingestion) Phagosome formation Phagolysosome
formation Killing Digestion
Microbiology: An Evolving Science © 2009 W. W. Norton & Company, Inc. 23
Microbiology: An Evolving Science © 2009 W. W. Norton & Company, Inc. 24
Acute Inflammatory Response
Initial lesionMicrobial specific structures activate epithelial cells and attract nearby phagocytes
Cytokines from epithelial cells and local phagoctes make capillaries permeable and attract neutrophils
Phagocytes engulf microbes.
Microbes are killed, wound heals, and return to normal.
Microbiology: An Evolving Science © 2009 W. W. Norton & Company, Inc. 25
Fever Pyrogens induce temperature rise
Exogenous pyrogens LPS Cause release of endogenous pyrogens
Endogenous pyrogens Cytokines Signal brain to raise temperature
High temperature stresses invading microbes
Microbiology: An Evolving Science © 2009 W. W. Norton & Company, Inc. 26
Innate Defense by Interferon Type 1 interferons produced by infected
host cellsCells with viral or bacterial pathogensSecrete small interferon proteinsNearby cells respond to interferons
Causes recipient cells to resist virusSynthesizes ds RNA endonucleaseMakes proteins to prevent protein translation
from viral RNA
Microbiology: An Evolving Science © 2009 W. W. Norton & Company, Inc. 27
Adaptive Immunity Humoral immunity
Mediated by antibodies Involves B cells that respond to specific antigens and
produce specific antibodies
Cellular immunity Involves T cells Special subtypes
T helper cells control antibody production, activate innate immune cells
Cytotoxic T cells (killer cells) directly kill infected host cells
Immunological Memory Mediated by Lymphocytes
Microbiology: An Evolving Science © 2009 W. W. Norton & Company, Inc. 28
+
Specific antigen recognition
Clonal proliferationm
Memory
mm
mm
mm
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Basic Structure of Antibodies (Immunoglobulins) Made by B lymphocytes
2 light chains 2 heavy chains Connected by disulfide
bridges Antigen binding region
Amino acids in this region are highly variable
Each B cell makes a unique antibody
Effector region Interact with host cells Amino acids in this region
are highly constant 5 different classes (M, G,
A,E,D) B cell can switch Ig
classes
Microbiology: An Evolving Science © 2009 W. W. Norton & Company, Inc. 30
Antibody Isotypes have Different Functions
IgM—First antibody in immune response Forms pentamer, agglutinates
IgG—Primary circulating antibody in blood Coats antigen, eases engulfment by phagocytes (opsonization)
IgA—Secreted across mucosa IgE—bound by mast cells
and basophils and plays role in allergic responses IgD—on surface of B cells and maturation marker
Microbiology: An Evolving Science © 2009 W. W. Norton & Company, Inc. 31
Antibody Response Primary antigen exposure
Disease or vaccinationAntibodies appear in serum after several days
B cells that bind antigen make antibodies IgM, then switch to IgG—Isotype switching
B cells change to memory cells
Secondary exposure to antigenPathogen or booster dose
Antibodies appear in blood within hours Mostly IgG antibodies Some new IgM are also formed
Microbiology: An Evolving Science © 2009 W. W. Norton & Company, Inc. 32
Natural and Artificial Immunity
Natural Course of natural
infection Antigen is in its natural
form Toxin (active) Microbe (replicative)
Artificial Vaccination and immunizations Antigen is modified
Inactivated Ex: Toxoid
Attenuated Live vaccine but unable to
cause the disease Never give to pregnant and
immunocompromised individuals
Ex: BCG vaccine
Microbiology: An Evolving Science © 2009 W. W. Norton & Company, Inc. 33
Active and Passive Immunizations
Active Antigen (active, inactivated
or attenuated) is introduced into host
Natural infection Vaccination
Host mounts immune response
Antibodies T cell mediated immunity
Long-term protection Host must be
immunocompetent
Passive Functional specific immune
mediators are introduced into the host
Antibodies Ex: maternal antibody
transfer in utero Host does not mount an
immune response No long-term protection For immediate protection Host can be
immunocompromised
Microbiology: An Evolving Science © 2009 W. W. Norton & Company, Inc. 34
Vaccines Most vaccines administered in childhood
Most administered as multiple booster dosesExcept influenza—new vaccine every year
Herd immunityProtects from person-to-person transmission If 70% of community is immune
Vaccinated or recovered from disease
Remaining individuals protected