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Chapter 20: Single-nucleotide Polymorphism Profiling
Variations in the human genomeSingle-base pair change originating
from spontaneous mutationsMajority of human DNA
polymorphisms1.4 million identifiedMost are bi-allelic
Forensic Biology by Richard Li 2
Advantages: SNPs are abundant and can be used as
markers SNP amplicon sizes are smaller than STR▪ 50-100 bp in length
Low mutation rates▪ Good for paternity
Many methods available ▪ Multiplex systems
Forensic Biology by Richard Li 3
Disadvantages: SNPs are not as polymorphic Difficult to resolve mixed profiles Majority of DNA databases contain STR
profiles instead of SNP
Forensic Biology by Richard Li 4
First use was with sequence polymorphisms at the HLA-DQA1 locus
Commercial kits: DQα AmpliType Kit AmpliType PM PCR amplification and
Typing kit
Forensic Biology by Richard Li 5
Allele-specific oligonucleotide hybridization assays Analyzes single nucleotide variations at
a given locus ASO probes hybridize to its
complementary DNA sequences in question to distinguish known polymorphic alleles
PCR based
Forensic Biology by Richard Li 6
Forensic identification Paternity Ethnic origin
Phenotyping Nonsynonymous SNPs Can reveal physical characteristics (e.g.
eye color)
Forensic Biology by Richard Li 7
Victim identification & Sexual assault cases
Amelogenin (AMEL) marker usedAMELX & AMELYAMELY null mutations
Forensic Biology by Richard Li 8