BioPSE Examples

NCRRNCRR

BioPSE Examples: Networks, Datasets, Tutorials, and

PowerApps

BioPSE Examples: Networks, Datasets, Tutorials, and

PowerApps

BioPSE Examples

NCRRNCRR

Example Networks (Nets)Example Networks (Nets)

Located in SCIRun/src/{PKG}/nets/

Major nets (applications)

Minor nets (module demos)

BioPSE Examples

NCRRNCRR

build-fem-elem-leadfield.netbuild-fem-elem-leadfield.net

BioPSE Examples

NCRRNCRR

dipole-localization-leadfield-vis.netdipole-localization-leadfield-vis.net

BioPSE Examples

NCRRNCRR

build-misfit-and-localize.netbuild-misfit-and-localize.net

BioPSE Examples

NCRRNCRR

Example Networks (Nets)Example Networks (Nets)

Located in SCIRun/src/{PKG}/nets/

Major nets (applications)

Minor nets (module demos)

BioPSE Examples

NCRRNCRR

showmatrix.netshowmatrix.net

BioPSE Examples

NCRRNCRR

show-text.netshow-text.net

BioPSE Examples

NCRRNCRR

Example DatasetsExample Datasets

QuickTime™ and aTIFF (Uncompressed) decompressor

are needed to see this picture.

QuickTime™ and aTIFF (Uncompressed) decompressor

are needed to see this picture.

QuickTime™ and aTIFF (Uncompressed) decompressor

are needed to see this picture.QuickTime™ and a

TIFF (Uncompressed) decompressorare needed to see this picture.

QuickTime™ and aTIFF (Uncompressed) decompressor

are needed to see this picture.

QuickTime™ and aTIFF (Uncompressed) decompressorare needed to see this picture.

QuickTime™ and aTIFF (Uncompressed) decompressor

are needed to see this picture.

QuickTime™ and aTIFF (Uncompressed) decompressor

are needed to see this picture.

QuickTime™ and aTIFF (Uncompressed) decompressor

are needed to see this picture.QuickTime™ and a

TIFF (Uncompressed) decompressorare needed to see this picture.QuickTime™ and a

TIFF (Uncompressed) decompressorare needed to see this picture.

BioPSE Examples

NCRRNCRR

SCIRun/BioPSE TutorialSCIRun/BioPSE Tutorial

Introduction to SCIRun/BioPSE for new users

•Dataflow Programming

•SCIRun Architecture

•Common Modules

•Datatypes

Introduction to SCIRun/BioPSE for new users

•Dataflow Programming

•SCIRun Architecture

•Common Modules

•Datatypes

BioPSE Examples

NCRRNCRR

SCIRun/BioPSE TutorialSCIRun/BioPSE Tutorial

Introduction to SCIRun/BioPSE for new users

•Dataflow Programming

•SCIRun Architecture

•Common Modules

•Datatypes

Introduction to SCIRun/BioPSE for new users

•Dataflow Programming

•SCIRun Architecture

•Common Modules

•Datatypes

Get the user comfortable in the SCIRun/BioPSE

environment

Get the user comfortable in the SCIRun/BioPSE

environment

BioPSE Examples

NCRRNCRR

SCIRun/BioPSE TutorialSCIRun/BioPSE Tutorial

Illustrates practical application of SCIRun/BioPSE

• Solve the bioelectric finite

element forward problem

• Allow the user to visualize

the electric field

Illustrates practical application of SCIRun/BioPSE

• Solve the bioelectric finite

element forward problem

• Allow the user to visualize

the electric field

BioPSE Package forward-fem.net

BioPSE Package forward-fem.net

BioPSE Examples

NCRRNCRR

Power AppsPower Apps

Problem specific applications

•Hide the complexities of dataflow

•Provide a simplified graphical

user interface

•Focus on a specific

Problem specific applications

•Hide the complexities of dataflow

•Provide a simplified graphical

user interface

•Focus on a specifictasktask

BioPSE Examples

NCRRNCRR

Power AppsPower Apps

Guide the user through specific processing stepsGuide the user through specific processing steps

Processing PaneProcessing Pane

BioPSE Examples

NCRRNCRR

Power AppsPower Apps

Provide different visualization optionsProvide different visualization options

Visualization PaneVisualization Pane

BioPSE Examples

NCRRNCRR

BioFEM BioFEM

Encapsulation of the forward-fem network Encapsulation of the forward-fem network

http://software.sci.utah.edu/doc/User/Tutorials/BioFEM/BioFEM.htmlhttp://software.sci.utah.edu/doc/User/Tutorials/BioFEM/BioFEM.html

• Change datasets

• Streamlines

• Isosurfaces

• Electrodes

• Change datasets

• Streamlines

• Isosurfaces

• Electrodes

BioPSE Examples

NCRRNCRR

BioTensorBioTensor

Diffusion Tensor Imaging Processing Steps

•Data Acquisition

•Registration

•Building Tensors

Visualization Options

Diffusion Tensor Imaging Processing Steps

•Data Acquisition

•Registration

•Building Tensors

Visualization Options•Planes

•Isosurfaces

•Planes

•Isosurfaces

•Glyphs

•Fibers

•Glyphs

•Fibers

BioPSE Examples

NCRRNCRR

BioTensorBioTensor

Diffusion Tensor Imaging Processing Steps

•Data Acquisition

•Registration

•Building Tensors

Visualization Options

Diffusion Tensor Imaging Processing Steps

•Data Acquisition

•Registration

•Building Tensors

Visualization Options•Planes

•Isosurfaces

•Planes

•Isosurfaces

•Glyphs

•Fibers

•Glyphs

•Fibers

BioPSE Examples

NCRRNCRR

BioTensorBioTensor

Diffusion Tensor Imaging Processing Steps

•Data Acquisition

•Registration

•Building Tensors

Visualization Options

Diffusion Tensor Imaging Processing Steps

•Data Acquisition

•Registration

•Building Tensors

Visualization Options•Planes

•Isosurfaces

•Planes

•Isosurfaces

•Glyphs

•Fibers

•Glyphs

•Fibers

http://software.sci.utah.edu/doc/User/Tutorials/BioTensor/BioTensor.htmlhttp://software.sci.utah.edu/doc/User/Tutorials/BioTensor/BioTensor.html

BioPSE Examples

NCRRNCRR

Power App BenefitsPower App Benefits

Hides a large networkHides a large network

BioPSE Examples

NCRRNCRR

Power App BenefitsPower App Benefits

Simplifies the GUISimplifies the GUI