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Basic Chemistry. Biochemistry: Essentials for Life. Inorganic Compounds Do not contain carbon Exceptions: CO, CO 2 Tend to be smaller , simpler compounds Example: H 2 O (water), NH 3 (ammonia) Organic Compounds Contain carbon Relatively larger molecules - PowerPoint PPT Presentation
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PowerPoint® Lecture Slide Presentation by Patty Bostwick-Taylor, Florence-Darlington Technical College
Copyright © 2009 Pearson Education, Inc., publishing as Benjamin Cummings
PART B2
Basic Chemistry
Copyright © 2009 Pearson Education, Inc., publishing as Benjamin Cummings
Biochemistry: Essentials for Life
Inorganic Compounds Do not contain carbon Exceptions: CO, CO2
Tend to be smaller, simpler compounds Example: H2O (water), NH3 (ammonia)
Organic Compounds Contain carbon Relatively larger molecules Covalently bonded, so are easier to break down Example: C6H12O6 (glucose), Fats, Lipids,
Proteins, DNA
Copyright © 2009 Pearson Education, Inc., publishing as Benjamin Cummings
Important Inorganic Compounds
Water
Most abundant inorganic compound
Vital Properties of Water High heat capacity – absorbs & releases heat before its
temperature changes appreciably; helps prevent sudden changes in body temperature
Polarity/solvent properties – universal solvent; dissolves salts, acids & bases, transports gases & wastes, lubricates joints
Chemical reactivity - hydrolysis: breakdown nutrients with water
Cushioning – Major component of cerebrospinal fluid (CSF) & amniotic fluid
Copyright © 2009 Pearson Education, Inc., publishing as Benjamin Cummings
Important Inorganic Compounds
Salts Ionic compounds made of cations & anions other than H+
or OH-
Polarity of water allows salts to dissociate into ions
Vital to many body functions – Na+ & K+ for nerve impulses, carriers across cell
membranes Ca+2 & P-3 in bones and teeth Fe+2 and Fe+3 for hemoglobin of rbcs Include electrolytes (charged particles) which
conduct electrical currents
Copyright © 2009 Pearson Education, Inc., publishing as Benjamin Cummings
Important Inorganic Compounds
Acids
Release hydrogen ions (H+)
Are “proton donors”
Sour taste
Example: HCl → H+ + Cl-
Bases
Release hydroxyl ions (OH–)
Are “proton acceptors”
Bitter taste, slippery
Example: NaOH → Na+ + OH-
Copyright © 2009 Pearson Education, Inc., publishing as Benjamin Cummings
Combining Acids + Bases…
Neutralization Reaction
Acids and bases always react to form water and a salt
NaOH + HCl →
H2O + NaCl
Copyright © 2009 Pearson Education, Inc., publishing as Benjamin Cummings
Figure 2.12
pH: Acid-Base Concentrations
Measures relative concentration of hydrogen ions in moles/Liter
pH 7 = neutral pH below 7 = acidic pH above 7 = basic
Buffers—weak acids & bases that absorb excess H + or OH- to maintain blood pH of 7.4
TPS: Checkpoint ?s
Copyright © 2009 Pearson Education, Inc., publishing as Benjamin Cummings
Organic Compounds
Large carbon based molecules containing small, reactive areas known as functional groups
Often are polymers (poly = many)…long chains of repeating units called monomers (mono = one)
Monomers connect by dehydration synthesis (de-hydra-tion = remove-water-having to do with) (synthesis = to put together)
Copyright © 2009 Pearson Education, Inc., publishing as Benjamin Cummings
Important Organic Compounds
Carbohydrates Contain carbon, hydrogen, and oxygen Include sugars and starches CHO ratio of approximately 1:2:1 Classified according to size
Monosaccharides—simple, individual sugar units
Glucose, fructose, galactose, ribose, deoxyribose
Copyright © 2009 Pearson Education, Inc., publishing as Benjamin Cummings
Carbohydrates
Disaccharides—two simple sugars joined by dehydration synthesis
Sucrose (glucose + fructose) Lactose (glucose + galactose) Maltose (glucose + glucose)
Copyright © 2009 Pearson Education, Inc., publishing as Benjamin Cummings
Carbohydrates
Polysaccharides—long, branching chains of linked simple sugars
Starch
Glycogen
Carbohydrates – source of food energy; produced through photosynthesis
C6H12O6 + 6 O2 → 6 CO2 + 6 H2O + ATP
Copyright © 2009 Pearson Education, Inc., publishing as Benjamin Cummings
Important Organic Compounds
Lipids
Also contain carbon, hydrogen, and oxygen Carbon and hydrogen outnumber oxygen
Insoluble in water Obtained from fats in diet -
Marbled meats, egg yolks, oils Solids – animal fat, saturated, C-C,
“bad fats” --clog arteries over time Liquid – plant oils, unsaturated, C=C, “healthier fats”
Copyright © 2009 Pearson Education, Inc., publishing as Benjamin Cummings
LipidsPLAY
Lipids
Common Lipids in the Human Body…
Neutral fats (triglycerides)
Found in fat deposits
Composed of fatty acids and glycerol
Source of stored energy in the body
Copyright © 2009 Pearson Education, Inc., publishing as Benjamin Cummings
Lipids
Figure 2.15a
Reaction type?
Copyright © 2009 Pearson Education, Inc., publishing as Benjamin Cummings
Lipids
Common lipids in the human body …
Phospholipids Form cell membranes
Steroids Include cholesterol, bile salts, vitamin D, and
some hormones Cholesterol found in:
Cell membranes Brain Used for vitamin D synthesis Used for synthesis of sex hormones
Copyright © 2009 Pearson Education, Inc., publishing as Benjamin Cummings
Lipids
Figure 2.15b
Saturated or unsaturated?
Copyright © 2009 Pearson Education, Inc., publishing as Benjamin Cummings
Figure 2.15c
Lipids
Cholesterol
The basis for all steroids made in the body
TPS: Checkpoint ?Double bond
glucose
ribose
Carbon atom
Copyright © 2009 Pearson Education, Inc., publishing as Benjamin Cummings
Important Organic Compounds
Proteins
Made of amino acids
Contain carbon, oxygen, hydrogen, nitrogen, and sometimes sulfur
Figure 2.16
Copyright © 2009 Pearson Education, Inc., publishing as Benjamin Cummings
Proteins
General amino acid structure
Contain an amino group (NH2)
Contain an acid group (C=O-OH)
Vary only by R groups, which are made of various carbon chains
Copyright © 2009 Pearson Education, Inc., publishing as Benjamin Cummings
Proteins
Classification of proteins…
Polypeptides: < 50 amino acids
Proteins: > 50 amino acids
Various combinations of the 20 different amino acids form all proteins
Account for over half of the body’s organic matter
Provide for construction materials for body tissues
Play a vital role in cell function
Act as enzymes, hormones, and antibodies
Copyright © 2009 Pearson Education, Inc., publishing as Benjamin Cummings
Figure 2.17a
Protein Types
Fibrous proteins
Also known as structural proteins
Appear in body structures…ear, nose, etc.
Examples: collagen (bones, cartilage, tendons) & keratin (hair, nails, skin)
Extremely stable—difficult to break down chemically
Copyright © 2009 Pearson Education, Inc., publishing as Benjamin Cummings
Figure 2.17b
Protein Types
Globular proteins
Also known as functional proteins
Function as antibodies, hormones or enzymes
Examples: Insulin, Hemoglobin
Can be denatured—broken down by changes in temp, pH, chemicals., etc.
Copyright © 2009 Pearson Education, Inc., publishing as Benjamin Cummings
Figure 2.18a
Enzymes
Act as biological catalysts Increase the rate of chemical reactions Don’t change, are reusable and are very specific Names end in suffix -ase
Copyright © 2009 Pearson Education, Inc., publishing as Benjamin Cummings
Important Organic Compounds Nucleic Acids
Made of C, H, O, N & P
Provide blueprint of life
Made of Nucleotides
Nitrogen base
5-carbon sugar
Phosphate
Figure 2.19a
Copyright © 2009 Pearson Education, Inc., publishing as Benjamin Cummings
Nitrogen Bases:
A = Adenine
G = Guanine
C = Cytosine
T = Thymine
U = Uracil
(only found in RNA)
Nucleotides combine to make DNA and RNA
Copyright © 2009 Pearson Education, Inc., publishing as Benjamin Cummings
Nucleic Acids
Deoxyribonucleic Acid (DNA)
Organized by complimentary bases to form double helix
Replicates before cell division
Provides instructions for every protein in the body
Figure 2.19c
Copyright © 2009 Pearson Education, Inc., publishing as Benjamin Cummings
DNA
Double-stranded
Nitrogen bases = A,T,C,G
Sugar = Deoxyribose
RNA
Single-stranded
Nitrogen bases = A,U,C,G
Sugar = ribose
Copyright © 2009 Pearson Education, Inc., publishing as Benjamin Cummings
Important Organic Compounds
Adenosine triphosphate (ATP)
Chemical energy used by all cells
Energy is released by breaking high energy phosphate bond
ATP is replenished by oxidation of food fuels
ATP nucleotide components:
Adenine
Ribose
3 phosphate groups
Copyright © 2009 Pearson Education, Inc., publishing as Benjamin Cummings
Release of ATP Energy
Note that Hydrolysis is the opposite of Dehydration Synthesis
Copyright © 2009 Pearson Education, Inc., publishing as Benjamin Cummings
Uses of ATP Energy
Copyright © 2009 Pearson Education, Inc., publishing as Benjamin Cummings
Uses of ATP Energy
Copyright © 2009 Pearson Education, Inc., publishing as Benjamin Cummings
Uses of ATP Energy
Copyright © 2009 Pearson Education, Inc., publishing as Benjamin Cummings
Figure 2.21
Uses of ATP …
ChemicalTransportMechanical
Energy released duringcellular oxidation of food is then used to regenerate ATP from ADP + P…