1
SEM Image Outline in AutoCAD Build Model In Comsol Solve Model Our ecosystem is dependent upon the ability of photosynthetic plants to convert solar energy into a form of energy useable to biological organisms. Even so, much remains to become understood about how plants function. With such expansive bodies, how do trees cycle water and nutrients throughout their bodies? Two fluidic transport systems exist in a vascularized tree: Xylem: water/minerals Composed primarily of dead tissue Phloem: products of photosynthesis (sugars) Composed of live cells called sieve tube elements Sieve tubes are lined up end-to-end to create a pipe with a boundary called a sieve plate between each cell Phloem function is particularly elusive Sensitive to manipulation Difficult to collect data without artifacts from sample preparation Researchers hypothesize that flow through the phloem happens via a process called osmotic gradient pressure flow (Fig. 1) The source tissue loads the sugar into the flow stream Water diffuses into the phloem, increasing the turgor pressure The high pressure pushes the solution toward areas of lower pressure Sink tissues unload the sugar, decreasing the concentration, allowing water to diffuse back into the xylem However, due to limitations in methods, mathematical predictions of flow are not in line with experimental data In order to develop an understanding of the flow process and how it is affected by the structures found in those sieve cells, we need quantitative data based on the true structure of the phloem. Recent advancements in computational methods give researchers a new tool that can overcome the limitations of current experimental methods. We have built models of sieve cells with a sieve plate obstruction from high resolution electron microscope images of sieve plates in order to evaluate: Is flow through these pipe described by classical fluid flow equations? How does the flow overcome the resistance effects from cellular structures which obstruct flow? Background & Objectives Methods Results Postion along cell (z- coordinate, μm) 0 5 10 15 20 25 30 Pressure (Pa) 0 10 20 30 40 50 Pressure Change Along Cell Sieve Plate Area μm 2 0.10 0.15 0.20 0.25 0.30 0.35 0.40 Modeled/Predicted 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0 Agreement of Numerical vs Analytical* Solutions of Flow Rate as a Function of Pore Area and Shape Less Circular More Circular *Analytical (predicted) solutions are considering a circular pore of equal area Resistance Effects: Resistance to flow is related to the pressure gradient that is driving the flow along the cell. In our cell models, the pressure changes drastically at the sieve plate. Our calculations show that the majority of resistance is attributed to the sieve plate, with 83% of the resistance due to sieve plates on average in these models. Evaluation of Mathematical models of fluid flow in cellular context Resistance through the phloem is largely due to sieve plates Current mathematical models treating the sieve pores as perfectly circular cannot approximate the actual real-world pore shape well enough to yield accurate predictions. Thanks to recent advancements in computing power, numerical methods offer an improved method of prediction and functional analysis. Next steps will be to continue analyzing structural contributions to flow resistance effects including: The angle of the sieve plate to the cell wall. The cellular components partially obstructing flow. After gaining quantitative data about resistance effects from the structure of the phloem, we will go on to model flow regulation systems through the phloem. Implications Future Directions H 2 0 Sugars Sugars H 2 O to/from xylem Sink Cell Source Cell Sieve Tube Companion Cells Flow Behavior through Pores: Velocity of flow appears to be fastest through pores with larger area, regardless of position on plate. The more a pore deviates from circular, the less likely the velocity of flow through that pore will agree with the mathematical solution for a circular pore of equal area. 1 2 3 4 Fluid Flow Principles: ( ) u p F u u t u 2 η ρ ρ + = + 0 = u Where: u= velocity ρ=density η=viscosity p= fluid pressure F=external force (gravity) Navier-Stokes Equation Mass Conservation Acceleration Force terms terms Fig. 1 Entrance Effects Exit Effects Velocity Magnitude (m/s)

Background & Objectives Methods

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Page 1: Background & Objectives Methods

SEM Image

Outlinein

AutoCAD

Build Model

InComsol

SolveModel

Our ecosystem is dependent upon the ability of photosynthetic plants to convertsolar energy into a form of energy useable to biological organisms. Even so, muchremains to become understood about how plants function. With such expansivebodies, how do trees cycle water and nutrients throughout their bodies?

Two fluidic transport systems exist in a vascularized tree: Xylem: water/minerals

Composed primarily of dead tissue Phloem: products of photosynthesis (sugars)

Composed of live cells called sieve tube elements Sieve tubes are lined up end-to-end to

create a pipe with a boundary called a sieve plate between each cell

Phloem function is particularly elusiveSensitive to manipulationDifficult to collect data without artifacts from

sample preparationResearchers hypothesize that flow through the phloem

happens via a process called osmotic gradient pressure flow (Fig. 1) The source tissue loads the sugar into the flow streamWater diffuses into the phloem, increasing the turgor

pressure The high pressure pushes the solution toward areas of

lower pressure Sink tissues unload the sugar, decreasing the

concentration, allowing water to diffuse back into the xylem

However, due to limitations in methods, mathematical predictions of flow are not in line with experimental data

In order to develop an understanding of the flow process and how it is affected by the structures found in those sieve cells, we need quantitative data based on the true structure of the phloem.

Recent advancements in computational methods give researchers a new tool that can overcome the limitations of current experimental methods.

We have built models of sieve cells with a sieve plate obstruction from high resolution electron microscope images of sieve plates in order to evaluate: Is flow through these pipe described by classical fluid

flow equations? How does the flow overcome the resistance effects from

cellular structures which obstruct flow?

Background & Objectives Methods

Results

Postion along cell (z- coordinate, µm)0 5 10 15 20 25 30

Pres

sure

(Pa)

0

10

20

30

40

50 Pressure Change Along Cell

Sieve Plate

Area µm20.10 0.15 0.20 0.25 0.30 0.35 0.40

Mod

eled

/Pre

dict

ed

0.3

0.4

0.5

0.6

0.7

0.8

0.9

1.0

Agreement of Numerical vs Analytical* Solutions of Flow Rateas a Function of Pore Area and Shape

Less Circular

More Circular

*Analytical (predicted) solutions are considering a circular pore of equal area

Resistance Effects: Resistance to flow is related to the pressure

gradient that is driving the flow along the cell. In our cell models, the pressure changes

drastically at the sieve plate.

Our calculations show that the majority of resistance is attributed to the sieve plate, with 83% of the resistance due to sieve plates on

average in these models.

Evaluation of Mathematical models of fluid flow in cellular context

Resistance through the phloem is largely due to sieve platesCurrent mathematical models treating the sieve pores as perfectly

circular cannot approximate the actual real-world pore shape well enough to yield accurate predictions.

Thanks to recent advancements in computing power, numerical methods offer an improved method of prediction and functional analysis.

Next steps will be to continue analyzing structural contributions to flow resistance effects including: The angle of the sieve plate to the cell wall. The cellular components partially obstructing flow.

After gaining quantitative data about resistance effects from the structure of the phloem, we will go on to model flow regulation systems through the phloem.

Implications Future Directions

H20Sugars

Sugars

H2O

to/

from

xyl

em

Sink Cell

Source Cell

Sieve Tube

Com panion Cells

Flow Behavior through Pores:

Velocity of flow appears to be fastest through pores with larger area, regardless

of position on plate.

The more a pore deviates from circular, the less likely the velocity of flow through that

pore will agree with the mathematical solution for a circular pore of equal area.

1

2

3

4

Fluid Flow Principles:

( ) upFuutu 2ηρρ ∇+∇−=∇⋅+∂∂

0=∇uWhere:

u= velocityρ=densityη=viscosityp= fluid pressureF=external force (gravity)

Navier-Stokes Equation

Mass Conservation

Acceleration Forceterms terms

Fig. 1

Entrance Effects

Exit Effects

Velocity Magnitude (m/s)