18
Supporting Information for Informatics Analysis of Capillary Electropherograms of Autologously Doped and Undoped Blood Shiladitya Chatterjee 1 , Sean C. Chapman 1 , George H. Major, 1 Denis L. Eggett 1 , Barry M. Lunt 1 , Christopher R. Harrison 2 , Matthew R. Linford 1 1 Brigham Young University, Provo, Utah 84602, USA 2 San Diego State University, San Diego, CA 92182-1030, USA Electronic Supplementary Material (ESI) for Analytical Methods. This journal is © The Royal Society of Chemistry 2019

Autologously Doped and Undoped Blood Supporting ...Supporting Information for Informatics Analysis of Capillary Electropherograms of Autologously Doped and Undoped Blood Shiladitya

  • Upload
    others

  • View
    2

  • Download
    0

Embed Size (px)

Citation preview

Page 1: Autologously Doped and Undoped Blood Supporting ...Supporting Information for Informatics Analysis of Capillary Electropherograms of Autologously Doped and Undoped Blood Shiladitya

Supporting Information for

Informatics Analysis of Capillary Electropherograms of Autologously Doped and Undoped Blood

Shiladitya Chatterjee1, Sean C. Chapman1, George H. Major, 1 Denis L. Eggett1, Barry M. Lunt1, Christopher R. Harrison2, Matthew R. Linford1

1 Brigham Young University, Provo, Utah 84602, USA2San Diego State University, San Diego, CA 92182-1030, USA

Electronic Supplementary Material (ESI) for Analytical Methods.This journal is © The Royal Society of Chemistry 2019

Page 2: Autologously Doped and Undoped Blood Supporting ...Supporting Information for Informatics Analysis of Capillary Electropherograms of Autologously Doped and Undoped Blood Shiladitya

Supporting Information Figure 1. Dendrogram from a cluster analysis of the 0, 5, and 10 %

electropherograms under consideration in this study. The data were pre-processed using range-

selection followed by normalization (1-norm). ‘Clean’, ‘D5%’, and ‘D10%’ represent the 0, 5,

and 10 % samples, and ‘A’, ‘B’, and ‘C’ represent the three subjects. The numbers after ‘A’, ‘B’,

or ‘C’ represent replica runs.

Page 3: Autologously Doped and Undoped Blood Supporting ...Supporting Information for Informatics Analysis of Capillary Electropherograms of Autologously Doped and Undoped Blood Shiladitya

Supporting Information Figure 2. Dendrogram from a cluster analysis of the 0 %, 5 %, and 10 %

electropherograms under consideration in this study. ‘Clean’, ‘D5%’, and ‘D10%’ represent the

0 %, 5 %, and 10% samples, and ‘A’, ‘B’, and ‘C’ represent the three subjects. The numbers

after ‘A’, ‘B’, or ‘C’ represent replica runs. The data was pre-processed using range-selection

followed by autoscaling.

Page 4: Autologously Doped and Undoped Blood Supporting ...Supporting Information for Informatics Analysis of Capillary Electropherograms of Autologously Doped and Undoped Blood Shiladitya

Supporting Information Figure 3. RMSEC (orange) and RMSECV (blue) plots from PCA calculations of the electropherograms from Subjects A, B and C for doped (5 % and 10 %) and undoped samples.

Page 5: Autologously Doped and Undoped Blood Supporting ...Supporting Information for Informatics Analysis of Capillary Electropherograms of Autologously Doped and Undoped Blood Shiladitya

Supporting Information Figure 4. Scores on PC1 from replicate runs of Subjects A, B and C for doped (5 % and 10 %) and undoped samples for a 1-Component PCA Model. Note: The undoped samples are labeled as ‘Clean’ and the replicate runs are labeled with the subject name and run number, i.e., A2 represents the second replicate run of Subject A.

Page 6: Autologously Doped and Undoped Blood Supporting ...Supporting Information for Informatics Analysis of Capillary Electropherograms of Autologously Doped and Undoped Blood Shiladitya

Supporting Information Figure 5. Scores on PC1 from replicate runs of Subjects A, B and C for doped (5 % and 10 %) and undoped samples for a 9-Component PCA Model. Note: The undoped samples are labeled as ‘Clean’ and the replicate runs are labeled with the subject name and run number, i.e., A2 represents the second replicate run of Subject A.

Page 7: Autologously Doped and Undoped Blood Supporting ...Supporting Information for Informatics Analysis of Capillary Electropherograms of Autologously Doped and Undoped Blood Shiladitya

Supporting Information Figure 6. Scores on PC2 from replicate runs of Subjects A, B and C for doped (5 % and 10 %) and undoped samples for a 9-Component PCA Model. Note: The undoped samples are labeled as ‘Clean’ and the replicate runs are labeled with the subject name and run number, i.e., A2 represents the second replicate run of Subject A.

Page 8: Autologously Doped and Undoped Blood Supporting ...Supporting Information for Informatics Analysis of Capillary Electropherograms of Autologously Doped and Undoped Blood Shiladitya

Supporting Information Figure 7. Scores on PC3 from replicate runs of Subjects A, B and C for doped (5 % and 10 %) and undoped samples for a 9-Component PCA Model. Note: The undoped samples are labeled as ‘Clean’ and the replicate runs are labeled with the subject name and run number, i.e., A2 represents the second replicate run of Subject A.

Page 9: Autologously Doped and Undoped Blood Supporting ...Supporting Information for Informatics Analysis of Capillary Electropherograms of Autologously Doped and Undoped Blood Shiladitya

Supporting Information Figure 8. Scores on PC4 from replicate runs of Subjects A, B and C for doped (5 % and 10 %) and undoped samples for a 9-Component PCA Model. Note: The undoped samples are labeled as ‘Clean’ and the replicate runs are labeled with the subject name and run number, i.e., A2 represents the second replicate run of Subject A.

Page 10: Autologously Doped and Undoped Blood Supporting ...Supporting Information for Informatics Analysis of Capillary Electropherograms of Autologously Doped and Undoped Blood Shiladitya

Supporting Information Figure 9. Scores on PC5 from replicate runs of Subjects A, B and C for doped (5 % and 10 %) and undoped samples for a 9-Component PCA Model. Note: The undoped samples are labeled as ‘Clean’ and the replicate runs are labeled with the subject name and run number, i.e., A2 represents the second replicate run of Subject A.

Page 11: Autologously Doped and Undoped Blood Supporting ...Supporting Information for Informatics Analysis of Capillary Electropherograms of Autologously Doped and Undoped Blood Shiladitya

Supporting Information Figure 10. Scores on PC6 from replicate runs of Subjects A, B and C for doped (5 % and 10 %) and undoped samples for a 9-Component PCA Model. Note: The undoped samples are labeled as ‘Clean’ and the replicate runs are labeled with the subject name and run number, i.e., A2 represents the second replicate run of Subject A.

Page 12: Autologously Doped and Undoped Blood Supporting ...Supporting Information for Informatics Analysis of Capillary Electropherograms of Autologously Doped and Undoped Blood Shiladitya

Supporting Information Figure 11. Scores on PC7 from replicate runs of Subjects A, B and C for doped (5 % and 10 %) and undoped samples for a 9-Component PCA Model. Note: The undoped samples are labeled as ‘Clean’ and the replicate runs are labeled with the subject name and run number, i.e., A2 represents the second replicate run of Subject A.

Page 13: Autologously Doped and Undoped Blood Supporting ...Supporting Information for Informatics Analysis of Capillary Electropherograms of Autologously Doped and Undoped Blood Shiladitya

Supporting Information Figure 12. Scores on PC8 from replicate runs of Subjects A, B and C for doped (5 % and 10 %) and undoped samples for a 9-Component PCA Model. Note: The undoped samples are labeled as ‘Clean’ and the replicate runs are labeled with the subject name and run number, i.e., A2 represents the second replicate run of Subject A.

Page 14: Autologously Doped and Undoped Blood Supporting ...Supporting Information for Informatics Analysis of Capillary Electropherograms of Autologously Doped and Undoped Blood Shiladitya

Supporting Information Figure 13. Scores on PC9 from replicate runs of Subjects A, B and C for doped (5 % and 10 %) and undoped samples for a 9-Component PCA Model. Note: The undoped samples are labeled as ‘Clean’ and the replicate runs are labeled with the subject name and run number, i.e., A2 represents the second replicate run of Subject A.

Page 15: Autologously Doped and Undoped Blood Supporting ...Supporting Information for Informatics Analysis of Capillary Electropherograms of Autologously Doped and Undoped Blood Shiladitya

Supporting Information Figure 14. Hotelling T2 vs Q residual plot from replicate runs of Subjects A, B and C for doped (5 % and 10 %) and undoped samples for a 1-Component PCA Model. Note: The undoped samples are labeled as ‘Clean’ and the replicate runs are labeled with the subject name and run number, i.e., A2 represents the second replicate run of Subject A.

Page 16: Autologously Doped and Undoped Blood Supporting ...Supporting Information for Informatics Analysis of Capillary Electropherograms of Autologously Doped and Undoped Blood Shiladitya

Supporting Information Figure 15. Hotelling T2 vs Q residual plot from replicate runs of Subjects A, B and C for doped (5 % and 10 %) and undoped samples for a 9-Component PCA Model. Note: The undoped samples are labeled as ‘Clean’ and the replicate runs are labeled with the subject name and run number, i.e., A2 represents the second replicate run of Subject A.

Page 17: Autologously Doped and Undoped Blood Supporting ...Supporting Information for Informatics Analysis of Capillary Electropherograms of Autologously Doped and Undoped Blood Shiladitya

Supporting Information Figure 16. RMSEC (orange) and RMSECV (blue) plots from PLS calculations of the electropherograms from Subjects A, B and C for doped (5 % and 10 %) and undoped samples.

Page 18: Autologously Doped and Undoped Blood Supporting ...Supporting Information for Informatics Analysis of Capillary Electropherograms of Autologously Doped and Undoped Blood Shiladitya

Supporting Information Figure 17. Raw PRE values of electrophoretic separations of subjects A, B and C for various doping levels (0 %, 5 % and 10 %).