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Ataxia in
Working Kelpies
Alan Wilton, Jeremy Shearman, Bill Ballard
School of Biochemistry and Molecular Genetics
University of New South Wales
Aim
! identify the genetic defect causing
cerebellar abiotrophy, ataxia
! find the ONE base in 2,500,000,000
of the dog genome
How
! Linkage grant application
! ~$70,000 p.a.
! funding from WKC
!$8,000 p.a.
! in kind contributions
" personnel
" samples
Tools
! samples from affected
! samples from relatives
! samples from controls
! dog genome sequence
! information from model organisms
with ataxias (eg human)
Dog Gene Mapping
! Reasons for identifying dog disease genes
!dog health
"many genetic diseases
!model for human genetic diseases
!identification of gene function
!understanding of development
Dog Gene Mapping
! Human is a good model for dog diseases
! human genome advanced
! many disease genes identified
" make good candidates for dog diseases
Humans as models
Dog Gene Mapping
! Breeding structures
! dogs similar to most domestic animals
" take a champion dog
" breed from it widely
" line breeding -! breeding related animals (with selection)
" results in identity-by-descent
" homozygosity of autosomal recessive defects
" genetic disease
! been estimated we each carry ~5 gene defects
Same defective copy of geneinherited from common ancestor
Dog Gene Mapping
! each breed is an isolated population
! different, independent defects
! ~300 breeds
! many genetic diseases
! some will be rare in human
" such orphan diseases difficult to identify in man
" dogs make good models for human disease
Two approaches
! Candidate gene
! find a gene you think is likely to be “it”
! test it.
! Whole genome mapping
! look everywhere
! narrow down possible locations
! the look at candidates
Mice as models
Other dogs asmodels
Dog Gene Mapping
! Need good coverage of the genome
with informative loci
! microsatellites
"DNA fingerprinting
"Paternity testing
! used in locating the disease gene
DogMapping
needsPedigrees
Dog Chromosomes
39 pairs
Genetic RH HumanRed markers common to both maps
Dogs
Dog Breeding
! High use of champion dogs
! inbreeding
! reveal genetic defects carried as harmless
recessive alleles in ancestor
! often defective alleles identical-by-descent
!inherited from common ancestor
! pedigrees can get quite complicated
!many multiple matings
Research
! Locating markers close to disease
!need pedigrees with several affecteds
!need lots of markers to test
!examine inheritance of disease allele and markers
! Like looking for needle in haystack
!need test 300 markers to cover all possibilities
!need large pedigree with many affected to provelinkage
Microsatellites on ABI377
Parentage Test
DAM
SIRE
PUP
Research - Positional cloning
! once location is known
!start search for disease gene itself
!examine known genes in region
!identify new genes in region to test
!find new markers in region
" test new markers on pedigrees for closeness
!can discover gene based only on position
Affecteds only approach
! modern technology advancing fast
! microarrays
! can test 20,000 sites at one time
! for $500 per animal
! 10 affecteds + 10 controls
! look for regions where no variation
in affecteds