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A Microscopic to Molecular Perspective in Modeling
Chromosomes
Educators attending this workshop will:o Support the NGSS student learning outcomes of three dimensional lesson design
utilizing the:
o Connecting Nucleotides to Chromosomes Kit© to:o Construct acrocentric, metacentric and submetacentric chromosomeso Create and analyze karyogramso Model and explain the process of mitosiso Model and explain the process of meiosis at the microscopic and molecular scaleo Explain genetic variation through modeling
o Learn something new and interesting that is for your own professional development.
o HAVE FUN!
WORKSHOP LEARNING OBJECTIVES
WORKSHOP LEARNING OBJECTIVES
What NGSS dimensions will be targeted?
SEPs CCCs DCIsAsking Questions and
Defining Problems Patterns LS1.A: Structure and Function
Developing and Using
Models
Cause and Effect:
Mechanism and Explanation
LS1.B: Growth and
Development of OrganismsConstructing Explanations
and Designing Solutions
Scale, Proportion, and
QuantityLS3.A: Inheritance of Traits
Engaging in Argument
from EvidenceStructure and Function
LS3.B: Variation in Traits
Analyzing and
Interpreting DataStability and Change
HOW DO WE KNOW WHAT WE KNOW?
Karl Wilhelm von Nägeli noted “transitory cytoblasts” while studying pollen formation in 1842. We now call these observed structures chromosomes!
Part of a long and complicated history!
Unfortunately, Nägeli made a name for himself by rejecting Gregor Mendel’s studies on inheritance and instead tenaciously holding on to his ideas of spontaneous generation and orthogenesis.
https://en.wikipedia.org/wiki/Carl_N%C3%A4geli
Image taken from The Cell-theory: a Restatement, History, and Critique Part V. The Multiplication of Nuclei By JOHN R. BAKER (From the Cytological Laboratory, Dept. of Zoology, University Museum, Ox
HOW DO WE KNOW WHAT WE KNOW?
https://www.uni-kiel.de/grosse-forscher/index.php?nid=flemming&lang=e
Walther Flemming is generally credited with describing the behavior of chromosomes during mitosis in 1882.
https://www.nature.com/scitable/content/drawing-of-mitosis-by-walther-flemming-43904
History continued . . . .
Consider this . . .An accurate count of human chromosomes didn’t occur until 1956by Tjio and Levan!
Flemming gets special mention because he had the heart of a teacher!
MULTIPLE MODELS OF CHROMOSOMES
ANOTHER CHROMOSOME MODEL!?!
YES!Why you ask?All shall be revealed in due time!
Now let’s build some chromosomes!Centromere
Linker
Telomere
Linker
Telomere
p arm
q arm
BUILD MODEL CHROMOSOMES
Acrocentric SubmetacentricMetacentric
BUILD MODEL CHROMOSOMES
Replicate your chromosomes!Build a maternal and paternal set!
BUILDING MODEL CHROMOSOMES
Completed Maternal and Paternal Chromosomes!
n = 3 (haploid number of chromosomes)
2n = 6 (diploid number of chromosomes)
MODEL KARYOGRAMS TO DETERMINE KARYOTYPE
http://ib.bioninja.com.au/standard-level/topic-3-genetics/32-chromosomes/karyograms.html http://ib.bioninja.com.au/standard-level/topic-3-genetics/32-chromosomes/karyograms.html
WHAT EXACTLY IS A CHROMOSOME?
http://ib.bioninja.com.au/standard-level/topic-3-genetics/32-chromosomes/karyograms.html
https://qph.fs.quoracdn.net/main-qimg-a5c27f2ff2b2ba120f64285d92a2f408-c
Chromosome? Duplicated Chromosome? Chromatid? Chromatin? Centromere?
BUT where’s the DNA?
PUT ON YOUR MOLECULAR SPECTACLES!
Replicated Chromosome at the Nucleotide Level!
What can this model do to expand the concept of the chromosome?
MODELING MITOSIS TO ANSWER AN ESSENTIAL QUESTION
How are characteristics passed from one generation of cells to the next?
Cell division for growth and repair of somatic (body) cells
Mitosis
Genetic information is maintained!
How does the model allow me to see that the genetic information is maintained?
AND SPEAKING OF INHERITANCE. . .
Why do we all look different?
http://pozboysg.tumblr.com/post/28550047424/janices-story-my-life-with-a-hiv-family-member
http://statchatva.org/2013/10/16/multigenerational-households/
https://www.ecald.com/updates/indian-and-south-asian-families-support-caring-for-their-disabledspecial-needs-family-members-monthly-support-group-meeting-28th-july-2016/
http://lovefromthedesert.blogspot.com/2010/10/redhouse-family.html
https://altright.com/2018/01/24/race-is-just-your-extended-family/https://nypost.com/2015/03/02/meet-the-bi-racial-twins-no-one-believes-are-sisters/
GENERATING GENETIC VARIATION DURING MEIOSIS
If the chromosomes line up like this . . . . . . you get gametes like this.
If the chromosomes line up like this . . . . . . you get gametes like this.
GENERATING GENETIC VARIATION DURING MEIOSIS
If the chromosomes line up like this . . . . . . you get gametes like this.
GENERATING GENETIC VARIATION DURING MEIOSIS
If the chromosomes line up like this . . . . . . you get gametes like this.
GENERATING GENETIC VARIATION DURING MEIOSIS
Due to independent assortment of chromosomes, in a cell where the haploid number of chromosomes equals 3 or 2n = 6, the number of different chromosomal arrangements in the daughter cells is 8!
GENERATING GENETIC VARIATION DURING MEIOSIS
The number of possible combinations when chromosomes sort independently during meiosis is 2n, where n is the haploid number of chromosomes in the organism.
In humans, the number of possible combinations of maternal and paternal chromosomes in the resulting sex cells is 223, or approximately 8.4 million!
WOW! That’s a lot of variation WITHOUT any crossing over!
GENERATING GENETIC VARIATION DURING MEIOSIS
PUT ON YOUR MOLECULAR SPECTACLES!
DNA Replication!
PUT ON YOUR MOLECULAR SPECTACLES!
Now let’s talk about inheritance!
PUT ON YOUR MOLECULAR SPECTACLES!
Now you can connect the Punnett Square to a nucleotide sequence!
https://edu.glogster.com/glog/sickle-cell-anemia/2bbb3vtjfok
Why the one gray nucleotide?
PUT ON YOUR MOLECULAR SPECTACLES!
Now Connect the Nucleotide Sequence to Protein Structure!
GENERATING EVEN MOREGENETIC VARIATION
CROSSING OVER
❖ The “swapping” of chromosome parts between homologous chromosomes
❖ Typically shown between two adjacent sister chromatids
https://qph.fs.quoracdn.net/main-qimg-a5c27f2ff2b2ba120f64285d92a2f408-c
GENERATING EVEN MOREGENETIC VARIATION
CROSSING OVER
Can the “outside” chromatids cross over?
They can indeed! Alignment of chromosomes happens in 3 dimensional space.
https://qph.fs.quoracdn.net/main-qimg-a5c27f2ff2b2ba120f64285d92a2f408-c
OR
Modeling “Traditional” Microscopic Meiosis Crossing Over
Homologous chromosomes line up.
Chromatids exchange parts.
Sister chromatids cross over.
GENERATING EVEN MOREGENETIC VARIATION
MOLECULAR CROSSING OVER
Homologous chromosomes align.
Consider “molecular meiosis”.
Begins with a BOLD step.
A specialized protein makes a double stranded break in one chromosome.
MOLECULAR CROSSING OVER
5’ to 3’ nuclease digests one strand from each end of the cut, one nucleotide at a time.
MOLECULAR CROSSING OVER
Homologous DNA sequence is “unzipped”.
MOLECULAR CROSSING OVER
Strand invasion occurs.
MOLECULAR CROSSING OVER
DNA polymerase uses homologous chromosome as the template to fill in the gaps (note gray nucleotides).
MOLECULAR CROSSING OVER
Single-stranded cuts in the chromosome that was used as the template (the red chromosome).
MOLECULAR CROSSING OVER
Ligase joins breaks in the DNA to form two recombinant chromosomes.
MOLECULAR CROSSING OVER
MODELING CROSSING OVER
Microscopic Crossing Over Molecular Crossing Over
According to the 4th edition of Molecular Biology of the Cell, on average, between two and three crossover events occur on each pair of human chromosomes during meiotic division I.
Think of the additional variation generated with crossing over!
MODELING CHROMOSOMAL ABERRATIONS
For example: TranslocationMicroscopic Scale Molecular Scale
MODELING OTHER CHROMOSOMAL ABERRATIONS
Students can think with models to show additional aberrations like . . .
Microscopically AND Molecularly
MODELING NONDISJUNCTION
When NONDISJUNCTION occurs during Meiosis I . . .
OOPS!
RESULT?No gametes with the correct number of chromosomes!
n - 1
n + 1
MODELING NONDISJUNCTION
When NONDISJUNCTION occurs during Meiosis II . . .RESULT?Some gametes have the correct number of chromosomes and some do NOT!
OOPS!
n + 1n n - 1
With their molecular spectacles firmly in place. . .
Guide students to think with models:
DIVING DEEPER WITH MODELS
How do chromosomes “find” their homologs during meiosis?
https://opentextbc.ca/biology/chapter/6-1-the-genome/
The bouquet arrangement in hexaploid wheat.
Carrie R. Cowan et al. Plant Physiol. 2001;125:532-538 ©2001 by American Society of Plant Biologists
❖ Telomeres are the same ❖ Why?
❖ Bouquet❖ Begin pairing at ends
HOW DO CHROMOSOMES FIND THEIR HOMOLOGS?
Two separate mitotic spindles
JUST WHEN YOU THOUGHT YOU UNDERSTOOD CELL DIVISION . . .
Reichmann et al., Science 361, 189–193 (2018) 13 July 2018
A New Way to Think About First Mitosis
Zielinska et al., Science 361, 128-129 (2018) 13 July 2018
THANK YOU!
HOW CAN I GET THESE GREAT MODELS?
Coming SOON this Fall
PURCHASE from 3D Molecular Designs:
https://www.3dmoleculardesigns.com/Education-Products.htm
Be sure to use your 20% show special discount code: STEM19
BORROW from the Model Lending Library:
http://cbm.msoe.edu/lendingLibrary/index.php
THANK YOU!
For more molecular stories. . .
Come visit us at booth 501!
We hope to see you soon!