GBIF Schweiz- vom Projekt zur operativen Phase

SCNAT Forum Biodiversität, 12. Mai 2011, Wislikofen

Pascal Tschudin ⋅ Yves Gonsethcontact.gbif@unine.ch

GBIFGBIF.org

Global Biodiversity Information Facility

GBIF is an open-ended international co-ordinating body set up with the overall aim of furthering technical and scientific efforts to develop and maintain a global informationfurthering technical and scientific efforts to develop and maintain a global information facility for sharing of digital biodiversity data.

The purpose of GBIF is to promote, co-ordinate, design and implement the compilation, p p p g p plinking, standardisation, digitisation and global dissemination of the world’s biodiversity data, within an appropriate framework for property rights and due attribution.

h i i i i h d f d di h ld kEach Participant signing the Memorandum of Understanding should seek to:[...]- share biodiversity data through GBIF under a common set of technical standards and

within an Intellectual Property Rights frameworkwithin an Intellectual Property Rights framework- form a Participant Node or Nodes, accessible via GBIF, that will organise and/or

provide access to biodiversity data, or to data and metadata standards, software tools or other services to enhance the GBIF network

http://www.gbif.ch

GBIFGBIF.org

http://data.gbif.org

http://www.gbif.ch

GBIF hGBIF.ch

General Conditions

- Centralized services for standardized data publication (National GBIF Node), offered to all Swiss institutions gathering biodiversity informations (Museumsoffered to all Swiss institutions gathering biodiversity informations (Museums, Swiss National Records Centers)

- Multilingual (F/D/I/E) approach for key concepts (Geography, Field- and identification methods, Ontogeny, Stratigraphy and others), allowing:

• a standardized publication at international level (data portal GBIF.org)

• multilingual queries and display at national level (data portal GBIF.ch)

- Considered domains: Zoology Botany PalaeontologyConsidered domains: Zoology, Botany, Palaeontology

http://www.gbif.ch

DIGITIZATION PROJECTSDIGITIZATION PROJECTS

Zoology Total funds allocated: CHF 333’200 (49%)

Institutions TitleMHNG Collections majeures de Plathelminthes parasitesMHNG, NMB Blattfloh-Sammlungen der SchweizNMB, NMLU Erfassung der Typen der Käferfamilien Cantharidae, Malachiidae and PhengodidaeMCSN, MZL, NMBE, SG, ZMZ Mollusques: Spécimens types, , , , q p ypMCSN, MZL, NMBE, SG, ZMZ Mollusques: Spécimens types, IconographieMZL, NMBE Checklist Ichneumonidae CHAG, BNM, ETHZ, MHNG, ZMZ Datenerfassung der Ichneumonidae (Hymenoptera) in Schweizer SammlungenNMBE MHNG Erfassung der Primärtypen in der Mollusken-Sammlung von Jules René BourguignatNMBE, MHNG Erfassung der Primärtypen in der Mollusken Sammlung von Jules René BourguignatNMLU Inventarisierung der Goldwespensammlung von Walter Linsenmaier

http://www.gbif.ch

DIGITIZATION PROJECTSDIGITIZATION PROJECTS

Botany Total funds allocated: CHF 227’900 (34%)

Institutions TitleCJB Digitalisation des données du genre UsneaCJB Saisie et digitalisation de l'herbier du Prodromus De CandolleCJB Databasing of the F. Stephani type specimens: an internationally important hepatic collectionCJB Saisie des échantillons de l'herbier GamisansNMLU Saisie musée de Lucerne (flore)

http://www.gbif.ch

DIGITIZATION PROJECTSDIGITIZATION PROJECTS

Palaeontology Total funds allocated: CHF 113’068 (17%)

Institutions TitleETHZ 200 Jahre Oswald Heer - Digitalisierung der paläontologischen TypensammlungNMBE Elektronische Datenerfassung der am NMBE hinterlegten paläontologischen TypenNMB Erstellung eines Typenkataloges Sammlung tertiär u. quartär SäugetierePIMUZ Internet-Katalog der Wirbeltiere aus der Mitteltrias des Monte San Giorgiog g

http://www.gbif.ch

DATA PREPARATION & IMPORTDATA PREPARATION & IMPORT

RAW DATA (xls)

DATA IMPORT TABLES DATA VALIDATED, ENRICHED,

FORMATTED DATA SERVER

RAW DATA (xls)

SECURED

http://www.gbif.ch

DATA PREPARATION & IMPORTDATA PREPARATION & IMPORT

RAW DATA (xls)

DATA IMPORT TABLES DATA VALIDATED, ENRICHED,

FORMATTED DATA SERVER

RAW DATA (xls)

SECURED

Specialists concerned

Names provided

International Standards (PESI/Fauna Europaea, COL)

http://www.gbif.ch

HOST PARASITEHOST – PARASITE

RAW DATA

MHNG-PLATH-60346 Barsonella lafoni de Chambrier et al., 2009Muséum d’histoire naturelle de la Ville de Genève

100μm

RAW DATA

ID Scientific Name Link Location Year

60346 Barsonella lafoni de Chambrier et al., 2009 Lac Tana, Bahar Dar ET 2006

60346a Clarias gariepinus (Burchell, 1822) 60346 Lac Tana, Bahar Dar ET 2006

http://www.gbif.chImage: (c) 2009 Revue de Zoologie

HOST PARASITEHOST – PARASITE

MHNG-PLATH-60346 Barsonella lafoni de Chambrier et al., 2009Muséum d’histoire naturelle de la Ville de Genève

RAW DATA

100μm

ID Scientific Name Host Location Year

60346 Barsonella lafoni de Chambrier et al., 2009 Clarias gariepinus (Burchell, 1822) Lac Tana, Bahar Dar ET 2006

RAW DATA

http://www.gbif.chImage: (c) 2009 Revue de Zoologie

HOST PARASITEHOST – PARASITE

RAW DATA

MHNG-PLATH-60346 Barsonella lafoni de Chambrier et al., 2009Muséum d’histoire naturelle de la Ville de Genève

100μm

ID Scientific Name Host Location Year

60346 Barsonella lafoni de Chambrier et al., 2009 Clarias gariepinus (Burchell, 1822) Lac Tana, Bahar Dar ET 2006

RAW DATA

PUBLISHED RECORDS

ID GENUS SPECIES AUTHORYEAR FAMILY LINK SPECIMEN LOCATION YEAR

60346 Barsonella lafoni de Chambrier et al., 2009 Proteocephalidae Lac Tana, Bahar Dar ET 2006

60346 A Clarias gariepinus (Burchell 1822) Clariidae 60346 Observation Lac Tana Bahar Dar ET 2006

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60346-A Clarias gariepinus (Burchell, 1822) Clariidae 60346 Observation Lac Tana, Bahar Dar ET 2006

Image: (c) 2009 Revue de Zoologie

DATA VALIDATION & INTEGRATIONDATA VALIDATION & INTEGRATION

IMPLEMENTED THESAURI

HIGHER TAXA: Catalogue of Life

GEOGRAPHY: NGA (International)swisstopo (national)

STRATIGRAPHY: ICSswisstopo

+ 10 controlled vocabularies

RAW DATA (xls)

DATA IMPORT TABLES DATA VALIDATED, ENRICHED,

FORMATTED DATA SERVER

RAW DATA (xls)

SECURED

Institution Error log on records

http://www.gbif.ch

DATA CLEANINGDATA CLEANING

Automated Validation Report

ID COLUMNNAME IER_MESSAGE51119 LONGITUDE LATITUDE L i i d d l t bli t i défi i d é é hi51119 LONGITUDE...LATITUDE La saisie de deux valeurs est obligatoire pour définir une coordonnée géographique 103968 DAYCOLLECTED Le champ DAYCOLLECTED doit être plus grand que 0 et plus petit ou égal à 31. Valeur saisie "0"96748 DAYCOLLECTED Le champ DAYCOLLECTED doit être plus grand que 0 et plus petit ou égal à 31. Valeur saisie "-2"50487 DAYCOLLECTED Le champ DAYCOLLECTED doit être plus grand que 0 et plus petit ou égal à 31. Valeur saisie "91"38129 GEOREFFAILEDBECAUSE Le champ GEOREFFAILEDBECAUSE est obligatoire si des valeurs sont fournies dans les champs GEOREFDATE,

GEOREFBASE, GEOREFLOC, GEOREFREMARK, GEOREFDETERMINATOR et si aucune coordonnées (LATITUDE, , , , ( ,LONGITUDE) n'est fournies

38170 GEOREFFAILEDBECAUSE Le champ GEOREFFAILEDBECAUSE est obligatoire si des valeurs sont fournies dans les champs GEOREFDATE, GEOREFBASE, GEOREFLOC, GEOREFREMARK, GEOREFDETERMINATOR et si aucune coordonnées (LATITUDE, LONGITUDE) n'est fournies

56974 MONTHCOLLECTED Le champ MONTHCOLLECTED doit être compris entre 1 et 12. Valeur saisie "23"93839 MONTHCOLLECTED L h MONTHCOLLECTED d it êt i t 1 t 12 V l i i "37"93839 MONTHCOLLECTED Le champ MONTHCOLLECTED doit être compris entre 1 et 12. Valeur saisie "37"85135 MONTHCOLLECTED Le champ MONTHCOLLECTED doit être compris entre 1 et 12. Valeur saisie "54"72228 SPECIES Le champ SPECIES est obligatoire40473 SPECIES Le champ SPECIES est obligatoire128098 KINGDOM...FAMILY Le valeur (Morinaceae) saisie dans le champs (FAMILY) de la systématique ne figure pas le thésaurus. 19654 KINGDOM...FAMILY Le valeur (Parnassiaceae) saisie dans le champs (FAMILY) de la systématique ne figure pas le thésaurus.19654 KINGDOM...FAMILY Le valeur (Parnassiaceae) saisie dans le champs (FAMILY) de la systématique ne figure pas le thésaurus. 19656 KINGDOM...FAMILY Le valeur (Parnassiaceae) saisie dans le champs (FAMILY) de la systématique ne figure pas le thésaurus. 53578 CONTINENT...COUNTY La (les) valeurs contenue(s) dans le champ county ne peuvent pas être identifiée(s) par le thésaurus.

Valeur saisie Badakhshan-Wakhan51958 CONTINENT...COUNTY La (les) valeurs contenue(s) dans le champ county ne peuvent pas être identifiée(s) par le thésaurus.

Valeur saisie Badakhshan-Wakhan

http://www.gbif.ch

DATA PUBLICATIONDATA PUBLICATION

RAW DATA (xls)

DATA IMPORT TABLES DATA VALIDATED, ENRICHED,

RAW DATA (xls)

FORMATTED DATA SERVER

SECURED

http://www.gbif.ch

DATA PUBLICATIONDATA PUBLICATION

RAW DATA (xls)

DATA IMPORT TABLES DATA VALIDATED, ENRICHED,

RAW DATA (xls)

FORMATTED DATA SERVER

SECURED

http://www.gbif.ch

ACCESS POINT Bi CASEACCESS POINT BioCASE

http://www.gbif.ch

Exact localityfree

Exact localityExact coordinates

≠CH

Status of the data

unspecified

CH

country

type

=CH

non type

= CH Locality = grid cell nameLong / Lat = grid cell centre

Documentation of generalization confidential

≠ CH

country

Locality: nearest named placeLong / Lat: rounded down

method

http://www.gbif.ch

(about 10 x 10 km)Consensus negotiated withdatabank managers

GBIF DATA PORTALGBIF.org DATA PORTAL

http://www.gbif.ch

DATA PUBLICATIONDATA PUBLICATION

RAW DATA (xls)

DATA IMPORT TABLES DATA VALIDATED, ENRICHED,

FORMATTED DATA SERVER

RAW DATA (xls)

SECURED

http://www.gbif.ch

MHNG-MAM-326.027 Petaurista philippensis oral (Tickell, 1842) Muséum d’histoire naturelle de la Ville de Genève

100μm

ID Scientific Name Parts Remarks Location Year

326.027 Petaurista philippensis oral (Tickell, 1842) Monté Squelette et crâne inscrit sous 326.028 Sumatra, Iles de la Sonde 1843

http://www.gbif.chImage: (c) 2009 Revue de Zoologie

MHNG-MAM-326.027 Petaurista philippensis oral (Tickell, 1842) Muséum d’histoire naturelle de la Ville de Genève

100μm

ID Scientific Name Parts Remarks Location Year

326.027 Petaurista philippensis oral (Tickell, 1842) Monté Squelette et crâne inscrit sous 326.028 Sumatra, Iles de la Sonde 1843

326.028 Petaurista philippensis oral (Tickell, 1842) Squelette+crâne Monté inscrit sous 326.027 Sumatra, Iles de la Sonde 1843

http://www.gbif.ch

ASSOCIATED PARTSASSOCIATED PARTS

http://www.gbif.ch

Data Portal GBIF Switzerland (Mock-up)

50024195002419

5002422

5002424

Fossil plate 5002410Naturhistorisches Museum Bern

5002420

5002423

5002421

50024255002426

1cm

(c) 2011 NMBE/Menkveld

ID GENUS SPECIES AUTHORYEAR FAMILY SAMPLE BIOSTRATI LOCATION YEAR

5002419 Paracenoceras calloviense (Oppel, 1857) Paracenoceratidae 5002410 coronatum Z. Liesberg, CH 2001

5002420 Hecticoceras metomphalum (Bonarelli, 1894) Oppeliidae 5002410 coronatum Z. Liesberg, CH 2001

5002421 Hecticoceras sp. Oppeliidae 5002410 coronatum Z. Liesberg, CH 20015002421 Hecticoceras sp. Oppeliidae 5002410 coronatum Z. Liesberg, CH 2001

5002422 Erymnoceras doliforme Sayn & Roman, 1930 Pachyceratidae 5002410 coronatum Z. Liesberg, CH 2001

5002423 Collotia sp. Reineckeiidae 5002410 coronatum Z. Liesberg, CH 2001

5002424 Aulacothyris pala (Buch, 1833) Zeilleriidae 5002410 coronatum Z. Liesberg, CH 2001

http://www.gbif.ch

5002425 Oecoptychius refractus (Reinecke, 1818) Strigoceratidae 5002410 coronatum Z. Liesberg, CH 2001

5002426 Trigonia elongata Sowerby, 1823 Trigoniidae 5002410 coronatum Z. Liesberg, CH 2001

SAMPLESSAMPLES

http://www.gbif.ch

Data Portal GBIF Switzerland (Mock-up)

http://www.gbif.ch

http://www.gbif.ch

OBJECTIVES SHORT TERMOBJECTIVES, SHORT TERM

2011 - 2012: Data Publication

• Publication of the observational records of all national biodiversity data centersof all national biodiversity data centers

• Publication of digitization project data

• Publication of already prepared museum datasets

2011 : Lessons learned from digitization projects

• « Best practice » for data digitization

http://www.gbif.ch

OBJECTIVES MEDIUM RANGEOBJECTIVES, MEDIUM RANGE

2012 - 2015: Technical aspects

• Guarantee the continuance of the developed IT-infrastructure

d d d fl• Document concepts, procedures and data flow

• Improvement of local data return

• Improvement of the current georeferencing routines for international data

• MetaCat connection

• Harvesting and Indexing Toolkit HIT

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OBJECTIVES MEDIUM RANGEOBJECTIVES, MEDIUM RANGE

2015: Data and specimen flow defined at national level

http://www.gbif.ch

OBJECTIVES MEDIUM RANGEOBJECTIVES, MEDIUM RANGE

2015: Data and specimen flow defined at national level

http://www.gbif.ch

OBJECTIVES MEDIUM RANGEOBJECTIVES, MEDIUM RANGE

2015: Data and specimen flow defined at national level

http://www.gbif.ch

OBJECTIVES LONG TERMOBJECTIVES, LONG TERM

2030: Vision

h ll h d d d d blThe 45 million specimens housed in Swiss museums are digitized and accessible via GBIF.

Swiss authorities in charge of culture and research and private sponsors support

• the management and extension of collections, with reference specimensgathered within all national surveysg y

• the research in systematics required for their scientific valorization

• study programs necessary to ensure the continuity of this ambitious initiative

http://www.gbif.ch

SWISS BIODIVERSITY DATA NETWORKSWISS BIODIVERSITY DATA NETWORK

Participation

43 Letters sent

35 R35 Responses

32 Signatures

3 Reservations (ressources)

8 Answers pending

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