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~ 60% Forested Land Cover > 50% ‘Intermixed’ Land …Credit: Stephen Harrison, from Noninvasive Survey Methods for Carnivores (2008) 40-45cm What’s In A Hair? 1. Individual identity

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Page 1: ~ 60% Forested Land Cover > 50% ‘Intermixed’ Land …Credit: Stephen Harrison, from Noninvasive Survey Methods for Carnivores (2008) 40-45cm What’s In A Hair? 1. Individual identity
Page 2: ~ 60% Forested Land Cover > 50% ‘Intermixed’ Land …Credit: Stephen Harrison, from Noninvasive Survey Methods for Carnivores (2008) 40-45cm What’s In A Hair? 1. Individual identity

Sightings reports from 2011 Provided by CT DEEP

Page 3: ~ 60% Forested Land Cover > 50% ‘Intermixed’ Land …Credit: Stephen Harrison, from Noninvasive Survey Methods for Carnivores (2008) 40-45cm What’s In A Hair? 1. Individual identity

~ 60% Forested Land Cover > 50% ‘Intermixed’ Land Use

Intermixed housing and forest 1. Promotes human-bear interactions 2. May affect bear biology and behavior

Page 4: ~ 60% Forested Land Cover > 50% ‘Intermixed’ Land …Credit: Stephen Harrison, from Noninvasive Survey Methods for Carnivores (2008) 40-45cm What’s In A Hair? 1. Individual identity

Provided by CT DEEP

Page 5: ~ 60% Forested Land Cover > 50% ‘Intermixed’ Land …Credit: Stephen Harrison, from Noninvasive Survey Methods for Carnivores (2008) 40-45cm What’s In A Hair? 1. Individual identity

Overview

Population Structure

1. Abundance & Density

2. Distribution

Behavior

1. Dispersal

2. Resource Selection

3. Home Range Structure

Page 6: ~ 60% Forested Land Cover > 50% ‘Intermixed’ Land …Credit: Stephen Harrison, from Noninvasive Survey Methods for Carnivores (2008) 40-45cm What’s In A Hair? 1. Individual identity

Credit: Stephen Harrison, from Noninvasive Survey Methods for Carnivores (2008)

40-45cm

Page 7: ~ 60% Forested Land Cover > 50% ‘Intermixed’ Land …Credit: Stephen Harrison, from Noninvasive Survey Methods for Carnivores (2008) 40-45cm What’s In A Hair? 1. Individual identity
Page 8: ~ 60% Forested Land Cover > 50% ‘Intermixed’ Land …Credit: Stephen Harrison, from Noninvasive Survey Methods for Carnivores (2008) 40-45cm What’s In A Hair? 1. Individual identity
Page 9: ~ 60% Forested Land Cover > 50% ‘Intermixed’ Land …Credit: Stephen Harrison, from Noninvasive Survey Methods for Carnivores (2008) 40-45cm What’s In A Hair? 1. Individual identity
Page 10: ~ 60% Forested Land Cover > 50% ‘Intermixed’ Land …Credit: Stephen Harrison, from Noninvasive Survey Methods for Carnivores (2008) 40-45cm What’s In A Hair? 1. Individual identity
Page 11: ~ 60% Forested Land Cover > 50% ‘Intermixed’ Land …Credit: Stephen Harrison, from Noninvasive Survey Methods for Carnivores (2008) 40-45cm What’s In A Hair? 1. Individual identity
Page 12: ~ 60% Forested Land Cover > 50% ‘Intermixed’ Land …Credit: Stephen Harrison, from Noninvasive Survey Methods for Carnivores (2008) 40-45cm What’s In A Hair? 1. Individual identity
Page 13: ~ 60% Forested Land Cover > 50% ‘Intermixed’ Land …Credit: Stephen Harrison, from Noninvasive Survey Methods for Carnivores (2008) 40-45cm What’s In A Hair? 1. Individual identity
Page 14: ~ 60% Forested Land Cover > 50% ‘Intermixed’ Land …Credit: Stephen Harrison, from Noninvasive Survey Methods for Carnivores (2008) 40-45cm What’s In A Hair? 1. Individual identity

What’s In A Hair?

1. Individual identity

2. Relationship to other bears

3. Dietary composition

Page 15: ~ 60% Forested Land Cover > 50% ‘Intermixed’ Land …Credit: Stephen Harrison, from Noninvasive Survey Methods for Carnivores (2008) 40-45cm What’s In A Hair? 1. Individual identity

Bo

bca

t

Bla

ck B

ear

Do

g

Dee

r

Rac

coo

n

Gra

y Fo

x

(-)

Ctr

l

Species Identification 1. Restriction enzyme digests 2. Sequence at highly conserved loci

Page 16: ~ 60% Forested Land Cover > 50% ‘Intermixed’ Land …Credit: Stephen Harrison, from Noninvasive Survey Methods for Carnivores (2008) 40-45cm What’s In A Hair? 1. Individual identity

Unique Genotypes – genetic ‘fingerprints’

1. Individual ID

2. Relationships

SAMPLE G10C G10M G1A G10B G1D G10L G10P

BEAR #1 114 200 113 161 130 125 163

114 200 117 165 130 125 173

BEAR #2 114 200 113 161 130 121 163

114 202 115 165 130 125 173

Probability of identity (

Page 17: ~ 60% Forested Land Cover > 50% ‘Intermixed’ Land …Credit: Stephen Harrison, from Noninvasive Survey Methods for Carnivores (2008) 40-45cm What’s In A Hair? 1. Individual identity

Applications

Population Estimation Population Genetics

Landscape Genetics

Cushman et al. (2006)

Coster et al. (2010)

Page 18: ~ 60% Forested Land Cover > 50% ‘Intermixed’ Land …Credit: Stephen Harrison, from Noninvasive Survey Methods for Carnivores (2008) 40-45cm What’s In A Hair? 1. Individual identity

Incorporates capture heterogeneity as fxn of relative location

Explicitly defined, inherent estimation of effective sampling area

Figures from Gardner et al. (2010)

Page 19: ~ 60% Forested Land Cover > 50% ‘Intermixed’ Land …Credit: Stephen Harrison, from Noninvasive Survey Methods for Carnivores (2008) 40-45cm What’s In A Hair? 1. Individual identity

1. Do bear densities differ among levels of human development?

2. Is bear dispersal affected by human landscape?

3. Does bear diet differ between human densities?

Page 20: ~ 60% Forested Land Cover > 50% ‘Intermixed’ Land …Credit: Stephen Harrison, from Noninvasive Survey Methods for Carnivores (2008) 40-45cm What’s In A Hair? 1. Individual identity

IDEAL: 3-4 sampling locations per female summer home range

Page 21: ~ 60% Forested Land Cover > 50% ‘Intermixed’ Land …Credit: Stephen Harrison, from Noninvasive Survey Methods for Carnivores (2008) 40-45cm What’s In A Hair? 1. Individual identity

Cub Sightings (2011)

> 25 16-25 11-15 1-5 6-10

Page 22: ~ 60% Forested Land Cover > 50% ‘Intermixed’ Land …Credit: Stephen Harrison, from Noninvasive Survey Methods for Carnivores (2008) 40-45cm What’s In A Hair? 1. Individual identity
Page 23: ~ 60% Forested Land Cover > 50% ‘Intermixed’ Land …Credit: Stephen Harrison, from Noninvasive Survey Methods for Carnivores (2008) 40-45cm What’s In A Hair? 1. Individual identity

• 150 ‘Hair Corrals’

• ~2.5km Spacing

• Checked weekly June through August

• 50 wildlife cameras (North grid)

Page 24: ~ 60% Forested Land Cover > 50% ‘Intermixed’ Land …Credit: Stephen Harrison, from Noninvasive Survey Methods for Carnivores (2008) 40-45cm What’s In A Hair? 1. Individual identity

72 Bear Samples

26 of 48 Sites

Collected Samples: July to September

Page 25: ~ 60% Forested Land Cover > 50% ‘Intermixed’ Land …Credit: Stephen Harrison, from Noninvasive Survey Methods for Carnivores (2008) 40-45cm What’s In A Hair? 1. Individual identity

26 Unique Individuals Identified

N = 42 ± 8.7

PID = 1.9x10-4

p= 15.6%

4:1 Female to Male Ratio

Page 26: ~ 60% Forested Land Cover > 50% ‘Intermixed’ Land …Credit: Stephen Harrison, from Noninvasive Survey Methods for Carnivores (2008) 40-45cm What’s In A Hair? 1. Individual identity

Isolation by Distance (Mantel Test)

R = 0.027

0.000

2.000

4.000

6.000

8.000

10.000

12.000

14.000

16.000

18.000

0.000 10.000 20.000 30.000 40.000 50.000 60.000 70.000

Ge

net

ic D

ista

nce

Euclidean Distance (km)

Female Black Bear Genetic and Euclidean Distances

0

10

20

30

40

50

60

70

80

Fre

qu

en

cy

Correlation Coefficient (r)

Frequency Distribution of Random Correlation vs. Observed Correlation

P=0.386

Page 27: ~ 60% Forested Land Cover > 50% ‘Intermixed’ Land …Credit: Stephen Harrison, from Noninvasive Survey Methods for Carnivores (2008) 40-45cm What’s In A Hair? 1. Individual identity

Spatial Genetic Clustering

-0.200

-0.100

0.000

0.100

0.200

0.300

0.400

0.500

0 to 1

0 to 2

0 to 3

0 to 4

0 to 5

0 to 6

0 to 7

0 to 8

0 to 9

0 to 10

0 to 11

0 to 12

0 to 13

0 to 14

0 to 15

0 to 16

0 to 17

0 to 18

0 to 19

0 to 20

0 to 21

0 to 22

0 to 23

0 to 24

0 to 25

r

Cumulative Distance (km)

Pairwise Relatedness at Multiple Distance Class Sizes

• Indication of spatial extent at which individuals are more closely related than random

• Individuals within 10 km closely related

Page 28: ~ 60% Forested Land Cover > 50% ‘Intermixed’ Land …Credit: Stephen Harrison, from Noninvasive Survey Methods for Carnivores (2008) 40-45cm What’s In A Hair? 1. Individual identity

June 1st to August 29th

405 Bear Samples

East Grid – 27/48 sites

South Grid – 11/50 sites

North Grid – 48/49 sites

Torrington

Waterbury

Page 29: ~ 60% Forested Land Cover > 50% ‘Intermixed’ Land …Credit: Stephen Harrison, from Noninvasive Survey Methods for Carnivores (2008) 40-45cm What’s In A Hair? 1. Individual identity
Page 30: ~ 60% Forested Land Cover > 50% ‘Intermixed’ Land …Credit: Stephen Harrison, from Noninvasive Survey Methods for Carnivores (2008) 40-45cm What’s In A Hair? 1. Individual identity
Page 31: ~ 60% Forested Land Cover > 50% ‘Intermixed’ Land …Credit: Stephen Harrison, from Noninvasive Survey Methods for Carnivores (2008) 40-45cm What’s In A Hair? 1. Individual identity

Isotopic Diet Analysis

Page 32: ~ 60% Forested Land Cover > 50% ‘Intermixed’ Land …Credit: Stephen Harrison, from Noninvasive Survey Methods for Carnivores (2008) 40-45cm What’s In A Hair? 1. Individual identity

Isotopic Mixing

Page 33: ~ 60% Forested Land Cover > 50% ‘Intermixed’ Land …Credit: Stephen Harrison, from Noninvasive Survey Methods for Carnivores (2008) 40-45cm What’s In A Hair? 1. Individual identity

1. Does bear density differ between levels of human development?

2. Is bear dispersal affected by human landscape?

3. Does bear diet differ between human densities?

Page 34: ~ 60% Forested Land Cover > 50% ‘Intermixed’ Land …Credit: Stephen Harrison, from Noninvasive Survey Methods for Carnivores (2008) 40-45cm What’s In A Hair? 1. Individual identity

Questions?

Page 35: ~ 60% Forested Land Cover > 50% ‘Intermixed’ Land …Credit: Stephen Harrison, from Noninvasive Survey Methods for Carnivores (2008) 40-45cm What’s In A Hair? 1. Individual identity

Isotope Ratios

Atmospheric CO2 - δ13C = -8

Atmospheric N2 - δ15N = 0

Ratios change during chemical bonding Fractionation

Mixing

Page 36: ~ 60% Forested Land Cover > 50% ‘Intermixed’ Land …Credit: Stephen Harrison, from Noninvasive Survey Methods for Carnivores (2008) 40-45cm What’s In A Hair? 1. Individual identity

Changes in δ15N

δ15N increases with trophic level

Preferential elimination of 14N in waste during de-aminification

Page 37: ~ 60% Forested Land Cover > 50% ‘Intermixed’ Land …Credit: Stephen Harrison, from Noninvasive Survey Methods for Carnivores (2008) 40-45cm What’s In A Hair? 1. Individual identity

C3 Plants C4 Plants

Highly selective against 13C

δ13C ~ -28

Predominant plants in temperate climates

More readily incorporate 13C

δ13C ~ -12

Tropical plants, CORN &SUGAR CANE

Changes in δ13C

Page 38: ~ 60% Forested Land Cover > 50% ‘Intermixed’ Land …Credit: Stephen Harrison, from Noninvasive Survey Methods for Carnivores (2008) 40-45cm What’s In A Hair? 1. Individual identity

26 Individuals Identified

N = 42 ± 8.7

PID = 1.9x10-4

p= 15.6%

Page 39: ~ 60% Forested Land Cover > 50% ‘Intermixed’ Land …Credit: Stephen Harrison, from Noninvasive Survey Methods for Carnivores (2008) 40-45cm What’s In A Hair? 1. Individual identity

Individual Genotypes

Spatial Mark-Recapture

Model

Robust Bear Density

Estimate

Page 40: ~ 60% Forested Land Cover > 50% ‘Intermixed’ Land …Credit: Stephen Harrison, from Noninvasive Survey Methods for Carnivores (2008) 40-45cm What’s In A Hair? 1. Individual identity

Individual Genotypes

Spatial Mark-Recapture

Model

Robust Bear Density

Estimate

Individual Genotypes

Spatial Mark-Recapture

Model

Robust Bear Density

Estimate

Individual Genotypes

Spatial Mark-Recapture

Model

Robust Bear Density

Estimate

Individual Genotypes

Spatial Mark-Recapture

Model

Robust Bear Density

Estimate

Page 41: ~ 60% Forested Land Cover > 50% ‘Intermixed’ Land …Credit: Stephen Harrison, from Noninvasive Survey Methods for Carnivores (2008) 40-45cm What’s In A Hair? 1. Individual identity

Bear Density

Home Range Structure

Dispersal Resource Selection

Page 42: ~ 60% Forested Land Cover > 50% ‘Intermixed’ Land …Credit: Stephen Harrison, from Noninvasive Survey Methods for Carnivores (2008) 40-45cm What’s In A Hair? 1. Individual identity

Bear Density

Home Range Structure

Dispersal Resource Selection

Page 43: ~ 60% Forested Land Cover > 50% ‘Intermixed’ Land …Credit: Stephen Harrison, from Noninvasive Survey Methods for Carnivores (2008) 40-45cm What’s In A Hair? 1. Individual identity

~ 20 collars on female bears in western CT

Take a position once per hour

Store information on location and movements from spring to winter

Photo credit: Connecticut Department of Energy and Environmental Conservation

Page 44: ~ 60% Forested Land Cover > 50% ‘Intermixed’ Land …Credit: Stephen Harrison, from Noninvasive Survey Methods for Carnivores (2008) 40-45cm What’s In A Hair? 1. Individual identity
Page 45: ~ 60% Forested Land Cover > 50% ‘Intermixed’ Land …Credit: Stephen Harrison, from Noninvasive Survey Methods for Carnivores (2008) 40-45cm What’s In A Hair? 1. Individual identity

Bear Density

Home Range Structure

Resource Selection

Page 46: ~ 60% Forested Land Cover > 50% ‘Intermixed’ Land …Credit: Stephen Harrison, from Noninvasive Survey Methods for Carnivores (2008) 40-45cm What’s In A Hair? 1. Individual identity

1. Quantify variables of interest at used locations

2. Compare use to availability – Higher or Lower than expected?

From Moorcroft and Barnett (2008)

Page 47: ~ 60% Forested Land Cover > 50% ‘Intermixed’ Land …Credit: Stephen Harrison, from Noninvasive Survey Methods for Carnivores (2008) 40-45cm What’s In A Hair? 1. Individual identity

0

0.1

0.2

0.3

0.4

0.5

0.6

0.7

0.8

0.9

1

Human Natural

Low Human Density

0

0.1

0.2

0.3

0.4

0.5

0.6

0.7

0.8

0.9

1

Human Natural

Used

Available

High Human Density

Page 48: ~ 60% Forested Land Cover > 50% ‘Intermixed’ Land …Credit: Stephen Harrison, from Noninvasive Survey Methods for Carnivores (2008) 40-45cm What’s In A Hair? 1. Individual identity
Page 49: ~ 60% Forested Land Cover > 50% ‘Intermixed’ Land …Credit: Stephen Harrison, from Noninvasive Survey Methods for Carnivores (2008) 40-45cm What’s In A Hair? 1. Individual identity

Model movement likelihoods given available resources at each GPS relocation

Produce probabilities of resource attraction/avoidance – incorporate into home range models

Selection is dependent on current location

Page 50: ~ 60% Forested Land Cover > 50% ‘Intermixed’ Land …Credit: Stephen Harrison, from Noninvasive Survey Methods for Carnivores (2008) 40-45cm What’s In A Hair? 1. Individual identity

Bear Density

Home Range Structure

Resource Selection

Page 51: ~ 60% Forested Land Cover > 50% ‘Intermixed’ Land …Credit: Stephen Harrison, from Noninvasive Survey Methods for Carnivores (2008) 40-45cm What’s In A Hair? 1. Individual identity

Bear Density

Home Range Structure

Resource Selection

Page 52: ~ 60% Forested Land Cover > 50% ‘Intermixed’ Land …Credit: Stephen Harrison, from Noninvasive Survey Methods for Carnivores (2008) 40-45cm What’s In A Hair? 1. Individual identity

Identify Predictors Test ecological hypotheses

From Horne & Garton 2012

Page 53: ~ 60% Forested Land Cover > 50% ‘Intermixed’ Land …Credit: Stephen Harrison, from Noninvasive Survey Methods for Carnivores (2008) 40-45cm What’s In A Hair? 1. Individual identity

Parameter Estimate (β)

Male ID Female Density Percent Slope OPEN

M05 8.77 -0.99 2.00

M09 47.58 -0.53 1.36

M25 1.48 -0.98 0.66

From Horne & Garton 2012

Page 54: ~ 60% Forested Land Cover > 50% ‘Intermixed’ Land …Credit: Stephen Harrison, from Noninvasive Survey Methods for Carnivores (2008) 40-45cm What’s In A Hair? 1. Individual identity

1. Female Bears Structure Home Ranges to Avoid Conspecifics

2. Female Bears Structure Home Ranges to Include Minimum Area of Forest

3. Female Bears Structure Home Ranges to Exclude Human Development

4. Compare btwn ‘Suburban’ and ‘Rural’ Bears

Page 55: ~ 60% Forested Land Cover > 50% ‘Intermixed’ Land …Credit: Stephen Harrison, from Noninvasive Survey Methods for Carnivores (2008) 40-45cm What’s In A Hair? 1. Individual identity

Describe relationship

between human and bear

density

Associate these patterns

with underlying processes

using GPS data

Quantify how human

landscape modification

affects those processes

Page 56: ~ 60% Forested Land Cover > 50% ‘Intermixed’ Land …Credit: Stephen Harrison, from Noninvasive Survey Methods for Carnivores (2008) 40-45cm What’s In A Hair? 1. Individual identity
Page 57: ~ 60% Forested Land Cover > 50% ‘Intermixed’ Land …Credit: Stephen Harrison, from Noninvasive Survey Methods for Carnivores (2008) 40-45cm What’s In A Hair? 1. Individual identity
Page 58: ~ 60% Forested Land Cover > 50% ‘Intermixed’ Land …Credit: Stephen Harrison, from Noninvasive Survey Methods for Carnivores (2008) 40-45cm What’s In A Hair? 1. Individual identity

Hair Collection: 2012

Determining Corral Distribution:

1. Areas with bears

2. Low human density

3. Contiguous habitat

4. 2-3 corrals per female home-range

Page 59: ~ 60% Forested Land Cover > 50% ‘Intermixed’ Land …Credit: Stephen Harrison, from Noninvasive Survey Methods for Carnivores (2008) 40-45cm What’s In A Hair? 1. Individual identity

Population Estimation: Genetic Mark Re-Capture

Page 60: ~ 60% Forested Land Cover > 50% ‘Intermixed’ Land …Credit: Stephen Harrison, from Noninvasive Survey Methods for Carnivores (2008) 40-45cm What’s In A Hair? 1. Individual identity

Population Estimation: Genetic Mark Re-Capture

Page 61: ~ 60% Forested Land Cover > 50% ‘Intermixed’ Land …Credit: Stephen Harrison, from Noninvasive Survey Methods for Carnivores (2008) 40-45cm What’s In A Hair? 1. Individual identity

Population Estimation: Genetic Mark Re-Capture

Unique genetic ID replaces physical mark

1. Obtain DNA from multiple ‘sampling’ sessions

2. Genotype individuals

3. Encounter History = ‘Captures’ and ‘Re-captures’