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Основы оптического имиджинга в нейронауках. Алексей Васильевич Семьянов. History. Santiago Ramón y Cajal Staining method (Golgi) Development of precise optics. History. Electrode based techniques dominate Extracellular electrodes, patch clamp, sharp electrode - PowerPoint PPT Presentation
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Основы оптического Основы оптического имиджинга в нейронаукахимиджинга в нейронауках
Алексей Васильевич Алексей Васильевич СемьяновСемьянов
HistoryHistory
Santiago Ramón y Cajal
• Staining method (Golgi) • Development of precise optics
History History
Electrode based techniques dominateExtracellular electrodes, patch clamp, sharp electrode
Calcium indicators developed The principle of confocal imaging was patented by Marvin Minsky in 1961- most of the excitation outside of focus-information cut by pinhole
Two-photon excitation concept first described by Maria Göppert-Mayer in 1931. Two-photon microscopy was pioneered by Winfried Denk in the lab of Watt W. Webb at Cornell University in 1990- all light is taken: no pinhole
Winfried Denk
HistoryHistory
Second harmonic generation - photons interacting with a nonlinear material are effectively "combined" to form new photons with twice the energy, and therefore twice the frequency and half the wavelength of the initial photons
P. A. Franken, A. E. Hill, C. W. Peters, and G. Weinreich at the University of Michigan, in 1961
In neuroscience used first in 2004 WW.Webb
real-time optical recording of neuronal action
potentials using SHG
Sacconi L, Dombeck DA, Webb WW.
PNAS 2006
Principle of fluorescence measurmentPrinciple of fluorescence measurment
Emission filter
STOP PASS
Emission-absorption spectrum ofEmission-absorption spectrum of Fluo-4 Fluo-4
Fluorescence measurementFluorescence measurement
Fluorescent microscope
Detector: CCD
(speed, sensitivity, resolution)
Up to 10 kHz
Light source: Mercury or Xenon Lamp
Spectrum
Stability
Filters
Charge-Coupled Devices (CCDs)Charge-Coupled Devices (CCDs)
Charge-Coupled Devices (CCDs)Charge-Coupled Devices (CCDs)
CCD - photon detector, a thin silicon wafer divided into a geometrically regular array
of thousands or millions of light-sensitive regions
Pixel - picture element
metal oxide semiconductor (MOS) capacitor operated
as a photodiode and storage device
Charge-Coupled Devices (CCDs)Charge-Coupled Devices (CCDs)
Laser scanning confocal microscopyLaser scanning confocal microscopy
Confocal microscope
Detector: photomultiplier
Light source: laser
Power
Wavelength
Filters
Scanner
Principle of two photon excitationPrinciple of two photon excitation
Difference between single photon and two Difference between single photon and two photon imagingphoton imaging
Winfried Denk and Karel Svoboda
Neuron, Vol. 18, 351–357, March, 1997
Single photon and two photon excitation in florescent Single photon and two photon excitation in florescent mediamedia
Single photon and two photon excitation in florescent Single photon and two photon excitation in florescent mediamedia
Two-photon excitation requires IR laserTwo-photon excitation requires IR laser
Scattering ~ (wavelength)4
Visible light
Infrared light
IR penetrates tissue much deeper
Advantages of two photon imagingAdvantages of two photon imaging
• No out-of-focus fluorescence• Better in depth resolution• Less photobleaching of the dye• Less photodamage of the dye• Less phototoxicity for the tissue
LimitationsLimitations of multiphoton imaging of multiphoton imaging
1. Two photon imaging has depth limit out of focus light (background) > 1000 m Theer, Hasan, Denk. Opt Lett. 2003
2. Scanner frame rate is relatively slow compare to open field imaging
3. light with wavelength over 1400 nm may be significantly absorbed by the water in living tissue – limits multiphoton excitation
4. IR lasers are expensive
Imaging laboratoryImaging laboratory
Two photon imaging systemTwo photon imaging system
(FL) femtosecond mode-locked laser
(BE) beam expander
(GM) pair of galvanometer scanning mirrors
(SL) scan-lens intermediate optics
(DM) dichroic mirror
(OBJ) objective lens
(PMT) photomultiplier detector
(HAL) computer
Two photon imaging systemTwo photon imaging system
(FL) femtosecond mode-locked laser
(BC) beam condenser
(BE) beam expander
(AOM) acusto-optic modulator
(RF) radio frequency generator
System of mirrors and diaphragms
FL
BC
AOM
RF
BE
Laser as a light sourceLaser as a light source
Constructed on different principles
wavelength (tunable) 1P in IR 2P in in visible spectrum Technical considerations
pulse width in pulsing lasersoutput powerbeam qualitysizecostpower consumptionoperating life
A laser for two photon microscopy:tuning range 690 to over 1050 nanometerspulse widths ~ 100 femtosecondsPulse frequency 80 MHzaverage power 2 W
Light Amplification by the Stimulated Emission of Radiation
Time
0 1 2 3 4 5
Pow
er
0.0
0.2
0.4
0.6
0.8
1.0
1.2Instantaneous
Average
Why a pulsed laser?Why a pulsed laser?
• Average laser power at the specimen = 100 mW, focused on a diffraction-limited spot
• Area of the spot = 2 × 10−9 cm2
• Average laser power in the spot = 0.1 W /(2 × 10−9 cm2) = 5 × 107 W cm−2
• Laser is on for 100 femtoseconds every 10 nanoseconds; therefore, the pulse duration to gap duration ratio = 10−5
• Instantaneous power when laser is on = 5 × 1012 W cm−2
Acusto-optic modulatorAcusto-optic modulator
Acusto-optic modulatorAcusto-optic modulator
No RF signal
RF signal
0-order beam
diffraction
Beam expanderBeam expander
The radius of the spot at the focus (aberration-free microscope objective, at distance z):
a(z) = f/a0
where f - focal length of the lensthe wavelength emitted by the laser
a0 - the beam waist radius at the laser exit aperture
Beam expander increases a0 and allows to concentrate beam
Reversed telescope
ScannerScanner
Focal plane
Line scan
Photomultiplier (PMT)Photomultiplier (PMT)
Quantum efficiency - % of photons which will produce photoelectron (depends on thickness of photocathode)
30% is good quantum efficiency
Photoelectron – produced
at photocathode by photon
Electrons acceleratedfrom one dynode to another
(voltage drop)
Quantum efficiency
Parameters of PMTParameters of PMT
Gain depends on the number of dynodes and voltage
Dark current (thermal emissions of electrons
from the photocathode, leakage current between dynodes, stray high-energy radiation)
Spectral sensitivity
depends on the chemical composition of the photocathode
gallium-arsenide elements from 300 to 800 nm
not uniformly sensitive
Epi and trans-fluorescenceEpi and trans-fluorescence
Second harmonic generation and transmitted Second harmonic generation and transmitted fluorescencefluorescence
810 nm
405 nm
SHG
810 nm
500 nm
Transmitted fluorescence
Second harmonic generationSecond harmonic generation
Second harmonic generation and fluorescence imagingSecond harmonic generation and fluorescence imaging
Second harmonic generation and fluorescence Second harmonic generation and fluorescence image of C.eleganceimage of C.elegance
SHG and fluorescence images of C.elegance
ComputersComputers
Scanner
PMTs
Specialized computer Computer with user interface
Scanning control
Image reconstruction
Computer softwareComputer software
Imaging laboratoryImaging laboratory
Imagingmonitors
Electrophysiologymonitors
Remote controls,
keyboards
Antivibrationtable
Manipulators
Microscope
CCD
Scanners
Ext. PMTs