View
232
Download
4
Category
Tags:
Preview:
DESCRIPTION
Presentation given at the Expert Group on Birds and Marine Mammals at the SCAR Open Science Conference.
Citation preview
ANTABIF:Antarctic Biodiversity Information Facility EGBAMM, 2012
Saturday 14 July 12
Our vision:Antarctic biodiversity data are open, linked, useful, interoperable and safe.
Saturday 14 July 12
What’s ANTABIF?
David B, Danis B, Griffiths HJSaturday 14 July 12
What’s ANTABIF?
• Born as Census of Antarctic Marine Life as the data, visualization and analysis component
David B, Danis B, Griffiths HJSaturday 14 July 12
What’s ANTABIF?
• Born as Census of Antarctic Marine Life as the data, visualization and analysis component
• Free and open access to biodiversity data: taxonomy and biogeography
David B, Danis B, Griffiths HJSaturday 14 July 12
What’s ANTABIF?
• Born as Census of Antarctic Marine Life as the data, visualization and analysis component
• Free and open access to biodiversity data: taxonomy and biogeography
• SCAR-MarBIN => ANTABIF projects
David B, Danis B, Griffiths HJSaturday 14 July 12
What’s ANTABIF?
• Born as Census of Antarctic Marine Life as the data, visualization and analysis component
• Free and open access to biodiversity data: taxonomy and biogeography
• SCAR-MarBIN => ANTABIF projects
• Science, conservation and management
David B, Danis B, Griffiths HJSaturday 14 July 12
What’s ANTABIF?
• Born as Census of Antarctic Marine Life as the data, visualization and analysis component
• Free and open access to biodiversity data: taxonomy and biogeography
• SCAR-MarBIN => ANTABIF projects
• Science, conservation and management
• Networked community developments
David B, Danis B, Griffiths HJSaturday 14 July 12
What’s ANTABIF?
• Born as Census of Antarctic Marine Life as the data, visualization and analysis component
• Free and open access to biodiversity data: taxonomy and biogeography
• SCAR-MarBIN => ANTABIF projects
• Science, conservation and management
• Networked community developments
• Scientific impact: Citations : 423, Publications: 58, H-Index: 11
David B, Danis B, Griffiths HJSaturday 14 July 12
What’s ANTABIF?
• Born as Census of Antarctic Marine Life as the data, visualization and analysis component
• Free and open access to biodiversity data: taxonomy and biogeography
• SCAR-MarBIN => ANTABIF projects
• Science, conservation and management
• Networked community developments
• Scientific impact: Citations : 423, Publications: 58, H-Index: 11
David B, Danis B, Griffiths HJSaturday 14 July 12
The first dynamic Register of Antarctic Marine Species
Taxonomic backbone
Board of 64 editors
Feeds World Register of Marine Species, Catalogue of Life and Encyclopedia of Life
Progress: Taxonomy17,098 taxa
Saturday 14 July 12
The first dynamic Register of Antarctic Marine Species
Taxonomic backbone
Board of 64 editors
Feeds World Register of Marine Species, Catalogue of Life and Encyclopedia of Life
Progress: Taxonomy17,098 taxa
Saturday 14 July 12
Progress: Biogeography
• Single access to 900 datasets
• 2.5 million records
• Data back to 1900 (Pygoscelis adeliae)
• Spatial data on over 5000 taxa
• Downloadable
• Interoperable
• Free and open
Saturday 14 July 12
Progress: Biogeography
• Single access to 900 datasets
• 2.5 million records
• Data back to 1900 (Pygoscelis adeliae)
• Spatial data on over 5000 taxa
• Downloadable
• Interoperable
• Free and open
Saturday 14 July 12
progress: ANTABIF Architecture
Saturday 14 July 12
• www.biodiversity.aq
progress: ANTABIF Architecture
Saturday 14 July 12
• www.biodiversity.aq• data.biodiversity.aq
progress: ANTABIF Architecture
Saturday 14 July 12
• www.biodiversity.aq• data.biodiversity.aq• ipt.biodiversity.aq
progress: ANTABIF Architecture
Saturday 14 July 12
• www.biodiversity.aq• data.biodiversity.aq• ipt.biodiversity.aq• afg.biodiversity.aq
progress: ANTABIF Architecture
Saturday 14 July 12
• www.biodiversity.aq• data.biodiversity.aq• ipt.biodiversity.aq• afg.biodiversity.aq• atlas.biodiversity.aq
progress: ANTABIF Architecture
Saturday 14 July 12
• www.biodiversity.aq• data.biodiversity.aq• ipt.biodiversity.aq• afg.biodiversity.aq• atlas.biodiversity.aq• mars.biodiversity.aq
progress: ANTABIF Architecture
Saturday 14 July 12
• www.biodiversity.aq• data.biodiversity.aq• ipt.biodiversity.aq• afg.biodiversity.aq• atlas.biodiversity.aq• mars.biodiversity.aq
progress: ANTABIF Architecture
Promote)the)communityEdriven)development)of)NPT)
• GBIF)promotes)training)and)use)of)NPT)
ANTABIF
MODULAR ARCHITECTURE
Saturday 14 July 12
• www.biodiversity.aq• data.biodiversity.aq• ipt.biodiversity.aq• afg.biodiversity.aq• atlas.biodiversity.aq• mars.biodiversity.aq
progress: ANTABIF ArchitectureNodes)Investment)in)new)func@onality)
• Nodes)extend)the)plaGorm)with)new)modules)
A)module)I)need)A)module)we)all)need)
Data discovery
Promote)the)communityEdriven)development)of)NPT)
• GBIF)promotes)training)and)use)of)NPT)
ANTABIF
MODULAR ARCHITECTURE
Saturday 14 July 12
• www.biodiversity.aq• data.biodiversity.aq• ipt.biodiversity.aq• afg.biodiversity.aq• atlas.biodiversity.aq• mars.biodiversity.aq
progress: ANTABIF ArchitectureNodes)Investment)in)new)func@onality)
• Nodes)extend)the)plaGorm)with)new)modules)
A)module)I)need)A)module)we)all)need)
Data discovery
Promote)the)communityEdriven)development)of)NPT)
• GBIF)promotes)training)and)use)of)NPT)
ANTABIF
MODULAR ARCHITECTURENodes)Investment)in)new)func@onality)
• Nodes)extend)the)plaGorm)with)new)modules)
A)module)I)need)A)module)we)all)need)
Data visualization
Saturday 14 July 12
• www.biodiversity.aq• data.biodiversity.aq• ipt.biodiversity.aq• afg.biodiversity.aq• atlas.biodiversity.aq• mars.biodiversity.aq
progress: ANTABIF ArchitectureNodes)Investment)in)new)func@onality)
• Nodes)extend)the)plaGorm)with)new)modules)
A)module)I)need)A)module)we)all)need)
Data discovery
Promote)the)communityEdriven)development)of)NPT)
• GBIF)promotes)training)and)use)of)NPT)
ANTABIF
MODULAR ARCHITECTURENodes)Investment)in)new)func@onality)
• Nodes)extend)the)plaGorm)with)new)modules)
A)module)I)need)A)module)we)all)need)
Data visualization
NPT)can)be)extended)by)crea@ng)and)installing)Modules)
Data products
Saturday 14 July 12
data.biodiversity.aq• data discovery interface• visualize occurrence data on map• view taxonomic data• download data• view metrics• send feedback• access technical documentation
Saturday 14 July 12
Data flow
Your data
standardize
DwC-A
upload publish
IPT ANTABIF
publish
Data Paper
(user’s point of view)
Saturday 14 July 12
Saturday 14 July 12
Saturday 14 July 12
Saturday 14 July 12
Saturday 14 July 12
Saturday 14 July 12
Saturday 14 July 12
Saturday 14 July 12
Saturday 14 July 12
ipt.biodiversity.aq• Integrated Publishing Toolkit
• standardize and clean your data• manage primary biodiversity data
• manage associated metadata• choose collaborators• generate and submit a Data Paper
• push data and metadata to Information Systems
Saturday 14 July 12
ipt.biodiversity.aq
Saturday 14 July 12
ipt. biodiversity.aq
Saturday 14 July 12
ipt. biodiversity.aq
Saturday 14 July 12
ipt. biodiversity.aq
Saturday 14 July 12
ipt. biodiversity.aq
Saturday 14 July 12
Data PaperMetadata document
Reward data publishing
Saturday 14 July 12
Proof of concept
Saturday 14 July 12
Proof of concept
Saturday 14 July 12
Proof of concept
Saturday 14 July 12
Proof of conceptAntarctic Star!sh (Echinodermata: asteroidea) from the ANDEEP3 expedition 73
Antarctic Starfish (Echinodermata, Asteroidea) from the ANDEEP3 expedition
Bruno Danis1, Michel Jangoux2, Jennifer Wilmes2
1 ANTABIF, 29, rue Vautier, 1000, Brussels, Belgium 2 Université Libre de Bruxelles, 50, av FD Roosevelt, 1050, Brussels, Belgium
Corresponding author: Bruno Danis (bruno.danis@gmail.com)
Academic editor: Vishwas Chavan | Received 13 March 2012 | Accepted 18 April 2012 | Published 23 April 2012
Citation: Danis B, Jangoux M, Wilmes J (2012) Antarctic Star"sh (Echinodermata: asteroidea) from the ANDEEP3 expedition. ZooKeys 185: 73–78. doi: 10.3897/zookeys.185.3078
Abstract#is dataset includes information on sea stars collected during the ANDEEP3 expedition, which took place in 2005. #e expedition focused on deep-sea stations in the Powell Basin and Weddell Sea.
Sea stars were collected using an Agassiz trawl (3m, mesh-size 500µm), deployed in 16 stations during the ANTXXII/3 (ANDEEP3, PS72) expedition of the RV Polarstern. Sampling depth ranged from 1047 to 4931m. Trawling distance ranged from 731 to 3841m. #e sampling area ranges from -41°S to -71°S (latitude) and from 0 to -65°W (longitude). A complete list of stations is available from the PANGAEA data system (http://www.pangaea.de/PHP/CruiseReports.php?b=Polarstern), including a cruise report (http://epic-reports.awi.de/3694/1/PE_72.pdf ).
#e dataset includes 50 records, with individual counts ranging from 1-10, reaching a total of 132 specimens.
#e andeep3-Asteroidea is a unique dataset as it covers an under-explored region of the Southern Ocean, and that very little information was available regarding Antarctic deep-sea star"sh. Before this study, most of the information available focused on star"sh from shallower depths than 1000m. #is dataset allowed to make unique observations, such as the fact that some species were only present at very high depths (Hymenaster crucifer, Hymenaster pellucidus, Hymenaster praecoquis, Psilaster charcoti, Freyella attenuata, Freyastera tuberculata, Styrachaster chuni and Vemaster sudatlanticus were all found below -3770m), while others displayed remarkable eurybathy, with very high depths amplitudes (Bathybiaster loripes (4842m), Lysasterias adeliae (4832m), Lophaster stellans (4752m), Cheiraster planeta (4708m), Er-emicaster crassus (4626m), Lophaster gaini (4560m) and Ctenodiscus australis (4489m)).
Even if the number of records is relatively small, the data bring many new insights on the taxonomic, bathymetric and geographic distributions of Southern star"sh, covering a very large sampling zone. #e dataset also brings to light six species, newly reported in the Southern Ocean.
#e quality of the data was controlled very thoroughly, by means of on-board Polarstern GPS sys-tems, checking of identi"cation by a renowned specialist (Prof. Michel Jangoux, Université Libre de Brux-
ZooKeys 185: 73–78 (2012)
doi: 10.3897/zookeys.185.3078
www.zookeys.org
Copyright Bruno Danis et al. This is an open access article distributed under the terms of the Creative Commons Attribution License 3.0 (CC-BY), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
DAtA PAPEr
Launched to accelerate biodiversity research
A peer-reviewed open-access journal
Saturday 14 July 12
Proof of conceptAntarctic Star!sh (Echinodermata: asteroidea) from the ANDEEP3 expedition 73
Antarctic Starfish (Echinodermata, Asteroidea) from the ANDEEP3 expedition
Bruno Danis1, Michel Jangoux2, Jennifer Wilmes2
1 ANTABIF, 29, rue Vautier, 1000, Brussels, Belgium 2 Université Libre de Bruxelles, 50, av FD Roosevelt, 1050, Brussels, Belgium
Corresponding author: Bruno Danis (bruno.danis@gmail.com)
Academic editor: Vishwas Chavan | Received 13 March 2012 | Accepted 18 April 2012 | Published 23 April 2012
Citation: Danis B, Jangoux M, Wilmes J (2012) Antarctic Star"sh (Echinodermata: asteroidea) from the ANDEEP3 expedition. ZooKeys 185: 73–78. doi: 10.3897/zookeys.185.3078
Abstract#is dataset includes information on sea stars collected during the ANDEEP3 expedition, which took place in 2005. #e expedition focused on deep-sea stations in the Powell Basin and Weddell Sea.
Sea stars were collected using an Agassiz trawl (3m, mesh-size 500µm), deployed in 16 stations during the ANTXXII/3 (ANDEEP3, PS72) expedition of the RV Polarstern. Sampling depth ranged from 1047 to 4931m. Trawling distance ranged from 731 to 3841m. #e sampling area ranges from -41°S to -71°S (latitude) and from 0 to -65°W (longitude). A complete list of stations is available from the PANGAEA data system (http://www.pangaea.de/PHP/CruiseReports.php?b=Polarstern), including a cruise report (http://epic-reports.awi.de/3694/1/PE_72.pdf ).
#e dataset includes 50 records, with individual counts ranging from 1-10, reaching a total of 132 specimens.
#e andeep3-Asteroidea is a unique dataset as it covers an under-explored region of the Southern Ocean, and that very little information was available regarding Antarctic deep-sea star"sh. Before this study, most of the information available focused on star"sh from shallower depths than 1000m. #is dataset allowed to make unique observations, such as the fact that some species were only present at very high depths (Hymenaster crucifer, Hymenaster pellucidus, Hymenaster praecoquis, Psilaster charcoti, Freyella attenuata, Freyastera tuberculata, Styrachaster chuni and Vemaster sudatlanticus were all found below -3770m), while others displayed remarkable eurybathy, with very high depths amplitudes (Bathybiaster loripes (4842m), Lysasterias adeliae (4832m), Lophaster stellans (4752m), Cheiraster planeta (4708m), Er-emicaster crassus (4626m), Lophaster gaini (4560m) and Ctenodiscus australis (4489m)).
Even if the number of records is relatively small, the data bring many new insights on the taxonomic, bathymetric and geographic distributions of Southern star"sh, covering a very large sampling zone. #e dataset also brings to light six species, newly reported in the Southern Ocean.
#e quality of the data was controlled very thoroughly, by means of on-board Polarstern GPS sys-tems, checking of identi"cation by a renowned specialist (Prof. Michel Jangoux, Université Libre de Brux-
ZooKeys 185: 73–78 (2012)
doi: 10.3897/zookeys.185.3078
www.zookeys.org
Copyright Bruno Danis et al. This is an open access article distributed under the terms of the Creative Commons Attribution License 3.0 (CC-BY), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
DAtA PAPEr
Launched to accelerate biodiversity research
A peer-reviewed open-access journal
Impa
ct F
acto
r: 0.
514
Saturday 14 July 12
afg. biodiversity.aq
• Identification aid• High quality (useful) pictures• Expert Descriptions• Built on-the-fly from various sources• Generates a pdf for taxa/area of interest
Saturday 14 July 12
afg. biodiversity.aq
Saturday 14 July 12
afg. biodiversity.aq
Saturday 14 July 12
afg. biodiversity.aq
Saturday 14 July 12
atlas.biodiversity.aq
Saturday 14 July 12
• Biogeographic Atlas of the Southern Ocean
atlas.biodiversity.aq
Saturday 14 July 12
• Biogeographic Atlas of the Southern Ocean
• Redo of Hedgepeth 1969 Folio
atlas.biodiversity.aq
Saturday 14 July 12
• Biogeographic Atlas of the Southern Ocean
• Redo of Hedgepeth 1969 Folio
• Predictive approach
atlas.biodiversity.aq
Saturday 14 July 12
• Biogeographic Atlas of the Southern Ocean
• Redo of Hedgepeth 1969 Folio
• Predictive approach
• Static and dynamic versions
atlas.biodiversity.aq
Saturday 14 July 12
• Biogeographic Atlas of the Southern Ocean
• Redo of Hedgepeth 1969 Folio
• Predictive approach
• Static and dynamic versions
• Modelization loops are ready
atlas.biodiversity.aq
Saturday 14 July 12
94 Interpolated data layersSlopeBathymetryChlorophyllDistance to the continentDistance to bird coloniesDistance to iceDistance to shelfDistance to canyonFloor temperature...+ ANTABIF Occurrence records
Saturday 14 July 12
94 Interpolated data layersSlopeBathymetryChlorophyllDistance to the continentDistance to bird coloniesDistance to iceDistance to shelfDistance to canyonFloor temperature...+ ANTABIF Occurrence records
Saturday 14 July 12
94 Interpolated data layersSlopeBathymetryChlorophyllDistance to the continentDistance to bird coloniesDistance to iceDistance to shelfDistance to canyonFloor temperature...+ ANTABIF Occurrence records
Saturday 14 July 12
R-functions GUI for BRT and GDM
Saturday 14 July 12
R-functions GUI for BRT and GDM
Saturday 14 July 12
atlas.biodiversity.aq
Saturday 14 July 12
• Outcomes of the Villefranche workshop
atlas.biodiversity.aq
Saturday 14 July 12
• Outcomes of the Villefranche workshop
• BRT models on 13 spp of penguins and 15 spp of seals (sub-ant and ant)
atlas.biodiversity.aq
Saturday 14 July 12
• Outcomes of the Villefranche workshop
• BRT models on 13 spp of penguins and 15 spp of seals (sub-ant and ant)
• Some models are doing ok, but needs refinement
atlas.biodiversity.aq
Saturday 14 July 12
Arctocephalus gazella
−90
−80
−70
−60
−50
−40
−100 0 100lon
lat
Arctocephalus.gazellaFALSETRUE
0.2
0.4
0.6
0.8
pred
Arctocephalus.gazella − BRT
Saturday 14 July 12
Hydrurga leptonyx
−90
−80
−70
−60
−50
−40
−100 0 100lon
lat
0.2
0.4
0.6
0.8
pred
Hydrurga.leptonyxFALSETRUE
Hydrurga.leptonyx − BRT
Saturday 14 July 12
Aptenodytes forsteri
−90
−80
−70
−60
−50
−40
−100 0 100lon
lat
0.2
0.4
0.6
0.8
pred
Aptenodytes.forsteriFALSETRUE
Aptenodytes.forsteri − BRT
Saturday 14 July 12
Pygoscelis adeliae
−90
−80
−70
−60
−50
−40
−100 0 100lon
lat
0.2
0.4
0.6
0.8
pred
Pygoscelis.adeliaeFALSETRUE
Pygoscelis.adeliae − BRT
Saturday 14 July 12
In the pipeline
Saturday 14 July 12
atlas.biodiversity.aq
Saturday 14 July 12
• Next steps
atlas.biodiversity.aq
Saturday 14 July 12
• Next steps
• Consolidate manuscripts
atlas.biodiversity.aq
Saturday 14 July 12
• Next steps
• Consolidate manuscripts
• Refine/select models and outputs
atlas.biodiversity.aq
Saturday 14 July 12
• Next steps
• Consolidate manuscripts
• Refine/select models and outputs
• Generate final versions of maps
atlas.biodiversity.aq
Saturday 14 July 12
• Next steps
• Consolidate manuscripts
• Refine/select models and outputs
• Generate final versions of maps
atlas.biodiversity.aq
Saturday 14 July 12
• Next steps
• Consolidate manuscripts
• Refine/select models and outputs
• Generate final versions of maps
• Dynamic version(s)
atlas.biodiversity.aq
Saturday 14 July 12
@biodiversityaq
image © NY Times
Thanks and questions?
Saturday 14 July 12
Recommended