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BioPSE Examples
NCRRNCRR
BioPSE Examples: Networks, Datasets, Tutorials, and
PowerApps
BioPSE Examples: Networks, Datasets, Tutorials, and
PowerApps
BioPSE Examples
NCRRNCRR
Example Networks (Nets)Example Networks (Nets)
Located in SCIRun/src/{PKG}/nets/
Major nets (applications)
Minor nets (module demos)
BioPSE Examples
NCRRNCRR
build-fem-elem-leadfield.netbuild-fem-elem-leadfield.net
BioPSE Examples
NCRRNCRR
dipole-localization-leadfield-vis.netdipole-localization-leadfield-vis.net
BioPSE Examples
NCRRNCRR
build-misfit-and-localize.netbuild-misfit-and-localize.net
BioPSE Examples
NCRRNCRR
Example Networks (Nets)Example Networks (Nets)
Located in SCIRun/src/{PKG}/nets/
Major nets (applications)
Minor nets (module demos)
BioPSE Examples
NCRRNCRR
showmatrix.netshowmatrix.net
BioPSE Examples
NCRRNCRR
show-text.netshow-text.net
BioPSE Examples
NCRRNCRR
Example DatasetsExample Datasets
QuickTime™ and aTIFF (Uncompressed) decompressor
are needed to see this picture.
QuickTime™ and aTIFF (Uncompressed) decompressor
are needed to see this picture.
QuickTime™ and aTIFF (Uncompressed) decompressor
are needed to see this picture.QuickTime™ and a
TIFF (Uncompressed) decompressorare needed to see this picture.
QuickTime™ and aTIFF (Uncompressed) decompressor
are needed to see this picture.
QuickTime™ and aTIFF (Uncompressed) decompressorare needed to see this picture.
QuickTime™ and aTIFF (Uncompressed) decompressor
are needed to see this picture.
QuickTime™ and aTIFF (Uncompressed) decompressor
are needed to see this picture.
QuickTime™ and aTIFF (Uncompressed) decompressor
are needed to see this picture.QuickTime™ and a
TIFF (Uncompressed) decompressorare needed to see this picture.QuickTime™ and a
TIFF (Uncompressed) decompressorare needed to see this picture.
BioPSE Examples
NCRRNCRR
SCIRun/BioPSE TutorialSCIRun/BioPSE Tutorial
Introduction to SCIRun/BioPSE for new users
•Dataflow Programming
•SCIRun Architecture
•Common Modules
•Datatypes
Introduction to SCIRun/BioPSE for new users
•Dataflow Programming
•SCIRun Architecture
•Common Modules
•Datatypes
BioPSE Examples
NCRRNCRR
SCIRun/BioPSE TutorialSCIRun/BioPSE Tutorial
Introduction to SCIRun/BioPSE for new users
•Dataflow Programming
•SCIRun Architecture
•Common Modules
•Datatypes
Introduction to SCIRun/BioPSE for new users
•Dataflow Programming
•SCIRun Architecture
•Common Modules
•Datatypes
Get the user comfortable in the SCIRun/BioPSE
environment
Get the user comfortable in the SCIRun/BioPSE
environment
BioPSE Examples
NCRRNCRR
SCIRun/BioPSE TutorialSCIRun/BioPSE Tutorial
Illustrates practical application of SCIRun/BioPSE
• Solve the bioelectric finite
element forward problem
• Allow the user to visualize
the electric field
Illustrates practical application of SCIRun/BioPSE
• Solve the bioelectric finite
element forward problem
• Allow the user to visualize
the electric field
BioPSE Package forward-fem.net
BioPSE Package forward-fem.net
BioPSE Examples
NCRRNCRR
Power AppsPower Apps
Problem specific applications
•Hide the complexities of dataflow
•Provide a simplified graphical
user interface
•Focus on a specific
Problem specific applications
•Hide the complexities of dataflow
•Provide a simplified graphical
user interface
•Focus on a specifictasktask
BioPSE Examples
NCRRNCRR
Power AppsPower Apps
Guide the user through specific processing stepsGuide the user through specific processing steps
Processing PaneProcessing Pane
BioPSE Examples
NCRRNCRR
Power AppsPower Apps
Provide different visualization optionsProvide different visualization options
Visualization PaneVisualization Pane
BioPSE Examples
NCRRNCRR
BioFEM BioFEM
Encapsulation of the forward-fem network Encapsulation of the forward-fem network
http://software.sci.utah.edu/doc/User/Tutorials/BioFEM/BioFEM.htmlhttp://software.sci.utah.edu/doc/User/Tutorials/BioFEM/BioFEM.html
• Change datasets
• Streamlines
• Isosurfaces
• Electrodes
• Change datasets
• Streamlines
• Isosurfaces
• Electrodes
BioPSE Examples
NCRRNCRR
BioTensorBioTensor
Diffusion Tensor Imaging Processing Steps
•Data Acquisition
•Registration
•Building Tensors
Visualization Options
Diffusion Tensor Imaging Processing Steps
•Data Acquisition
•Registration
•Building Tensors
Visualization Options•Planes
•Isosurfaces
•Planes
•Isosurfaces
•Glyphs
•Fibers
•Glyphs
•Fibers
BioPSE Examples
NCRRNCRR
BioTensorBioTensor
Diffusion Tensor Imaging Processing Steps
•Data Acquisition
•Registration
•Building Tensors
Visualization Options
Diffusion Tensor Imaging Processing Steps
•Data Acquisition
•Registration
•Building Tensors
Visualization Options•Planes
•Isosurfaces
•Planes
•Isosurfaces
•Glyphs
•Fibers
•Glyphs
•Fibers
BioPSE Examples
NCRRNCRR
BioTensorBioTensor
Diffusion Tensor Imaging Processing Steps
•Data Acquisition
•Registration
•Building Tensors
Visualization Options
Diffusion Tensor Imaging Processing Steps
•Data Acquisition
•Registration
•Building Tensors
Visualization Options•Planes
•Isosurfaces
•Planes
•Isosurfaces
•Glyphs
•Fibers
•Glyphs
•Fibers
http://software.sci.utah.edu/doc/User/Tutorials/BioTensor/BioTensor.htmlhttp://software.sci.utah.edu/doc/User/Tutorials/BioTensor/BioTensor.html
BioPSE Examples
NCRRNCRR
Power App BenefitsPower App Benefits
Hides a large networkHides a large network
BioPSE Examples
NCRRNCRR
Power App BenefitsPower App Benefits
Simplifies the GUISimplifies the GUI
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