Linkatu: Linked data in industry W3C, Granada 2012

http://richard.cyganiak.de/2007/10/lod/

“the value of your information

grows exponentially with your

ability to combine it with new

information”

– Henry Story, Sun Microsystems

BBC and Linked Data @metade

http://www.bbc.co.uk/programmes/b00hqlc4

http://www.bbc.co.uk/music/artists/70248960-cb53-4ea4-943a-edb18f7d336f

http://en.wikipedia.org/wiki/Springsteen

http://musicbrainz.org/artist/70248960-cb53-4ea4-943a-edb18f7d336f

http://www.bbc.co.uk/nature/life/Lion

http://dbpedia.org/page/Lion

http://en.wikipedia.org/wiki/Lion

http://www.w3.org/2001/sw/sweo/public/UseCases/Volkswagen/

Domain Driven Design

Website is the API

Persistence

Linked Data

RESTful

Internet is the CMS

opendata

Officially launched 21st January 2010

http://www.legislation.gov.uk/

data.worldbank.org

http://openelectiondata.org/

http://data.nytimes.com/

http://datos.fundacionctic.org/sandbox/catalog/faceted/

http://www.guardian.co.uk/news/datablog

http://www.guardian.co.uk/news/datablog

opendata

Open about what you do

Open about what you know

Open to new engagement

Supporting others to be open

Semantic Web projects in life sciences and health

care environments @Linkatu

Drug Development Process

TI HI LO ECD PoC DfL Reg LCM

Discovery Early Clinical

Dev. Development

Preclinical studies Clinical studies

• Target Identification

• Hit Identification

• Lead Optimisation

• Proof of Concept

• Development for Launch

• Registration and Launch

• Life Cycle Management

The way to semantic Service Oriented Architecture

50 million sequences obtained by 2015

The pharma industry loses

$4.2 billion per year due to

drug trial delays

$1,000 genome; $100,000 analysis?

http://www.flickr.com/photos/nic221/391536867/

1.5M publications/year

1 million authors

million readers at >10,000 institutions 15

downloads per year 1.5B

20billion€

too much to read

too expensive

too difficult to find

http://linkedlifedata.com/

code.google.com/p/bio2rdf

what is a “data market place" ?

Service that make it easy to find data from a range of secondary data sources, then consume the data in a usable and unified format. Several of these services are trying to create marketplaces for data, envisioning that data providers can offer their data sets for sale to data seekers

what is a "platform" ?

a place where we encourage... support... enable... our communities

You own the data

You control access

You can pull it/change it

You can delete it

You can decide what is best

Translational Medicine Platform for Alzheimer´s Disease Data Integration Platform for Patients, Physicians and Researchers Use Tabs for play each role. http://85.48.202.13:8080/AD/index.html

Being a Patient Monitor your progress Know Side Effects of Drugs you are taking Mappings to Generic Ontologies ICD9 Coded

Being a Physician Monitor your patients Retrieve info from PubMed Answer complex queries Are there active clinical trials that my patients may participate with different MOA because of side effects?

Being a Researcher Retrieve information from distributed sources Get the latest relevant scientific articles Answer complex queries What Biomarkers are associated with or implicated in Alzheimer´s Disease?

Breast Cancer Decision Support System http://85.48.202.13:8080/BreastCancer/BC.html Deployed at Cruces Hospital – Bilbao Use of Description Logic and Inference Rules to deduce the Diagnosis and Treatment Customized Breast Cancer ontology

Information Retrieval from Distributed Sources for Breast Cancer Matchmaking process between Patient´s PHR and Distributed Sources Retrieves Information such as Clinical Trials, PubMed articles, Adjuvant Treatments, genes,…

Information Retrieval from Distributed Sources for Breast Cancer Matchmaking process between Patient´s PHR and Distributed Sources Retrieves Information such as Clinical Trials, PubMed articles, Adjuvant Treatments, genes,…

OmicsHub

http://85.48.202.13:8080/SWDemo/index.jsp

The inputs for the prototype will be a list of genes and a list of proteins which have been acquired from different time points of the lifecycle of a cell. Integrate Both Datasets Find Relevant Pubmed Articles Organize into clusters Known Protein Interactions

Marketers

Consumers

Marketers Developers

Data Applications

Consumers

Copyright © 2010 Scott Brinker

Marketing Data Marketing

The data marketing ecosystem—beyond APIs.

"Data marketplace" Infochimps raises

$1.2M to build out its data offerings

Factual, a startup that claims to host hundreds

of thousands of data sets, has raised $25

million in its first round of institutional funding.

Mendeley Snags $2 Million In Early-Stage

Funding For Research Paper Management Tool

Sermo Closes 26.7 Million in Funding to

Evolve Online Community for Physicians

PatientsLikeMe take in $8M funding

hola@linkatu.net