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Page 1: Harm Kampinga - cssi-educational porto alegre - chaperone concepts

Harm H. Kampinga

Dept. of Cell Biology, UMC Groningen, The Netherlands

Cell  Stress  and  Chaperones:basic  concepts

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

1

Page 2: Harm Kampinga - cssi-educational porto alegre - chaperone concepts

Ritossa,  1962

Tissieres  et  al  .,  1974

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

Originally,   heat   shock   genes   (Ritossa,   1962)   and   later   heat   shock   proteins  (Tissieres  et  al  1974),  were  described  to  be  genes/proteins  of  which  the  expression  increased  aBer  an  heat  shock.  

2

Page 3: Harm Kampinga - cssi-educational porto alegre - chaperone concepts

Originally,   heat   shock   genes   (Ritossa,   1962)   and   later   heat   shock   proteins  (Tissieres  et  al  1974),  were  described  to  be  genes/proteins  of  which  the  expression  increased  aBer  an  heat  shock.  Heat  shock  proteins  (HSP)  were  defined  as  proteins  encoded  by  genes  that  contain  so-­‐called  “heat  shock  elements  (HSE)  in  their  genes  that  are  regulated  by  the  “heat  shock  transcripNon  factor-­‐1  (HSF-­‐1)”

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

3

Page 4: Harm Kampinga - cssi-educational porto alegre - chaperone concepts

Akerfelt  et  al.,  2011

Originally,   heat   shock   genes   (Ritossa,   1962)   and   later   heat   shock   proteins  (Tissieres  et  al  1974),  were  described  to  be  genes/proteins  of  which  the  expression  increased  aBer  an  heat  shock.  Heat  shock  proteins  (HSP)  were  defined  as  proteins  encoded  by  genes  that  contain  so-­‐called  “heat  shock  elements  (HSE)  in  their  genes  that  are  regulated  by  the  “heat  shock  transcripNon  factor-­‐1  (HSF-­‐1)”

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

3

Page 5: Harm Kampinga - cssi-educational porto alegre - chaperone concepts

Morimoto  1998

Originally,   heat   shock   genes   (Ritossa,   1962)   and   later   heat   shock   proteins  (Tissieres  et  al  1974),  were  described  to  be  genes/proteins  of  which  the  expression  increased  aBer  an  heat  shock.  

Nowadays,   we   know   that   many   situaNons,   both   physiologically   and   stressful  condiNons  can  acNvate  HSF-­‐1

Heat  shock  proteins  (HSP)  were  defined  as  proteins  encoded  by  genes  that  contain  so-­‐called  “heat  shock  elements  (HSE)  in  their  genes  that  are  regulated  by  the  “heat  shock  transcripNon  factor-­‐1  (HSF-­‐1)”

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

4

Page 6: Harm Kampinga - cssi-educational porto alegre - chaperone concepts

Originally,   heat   shock   genes   (Ritossa,   1962)   and   later   heat   shock   proteins  (Tissieres  et  al  1974),  were  described  to  be  genes/proteins  of  which  the  expression  increased  aBer  an  heat  shock.  

Nowadays,   we   know   that   many   situaNons,   both   physiologically   and   stressful  condiNons  can  acNvate  HSF-­‐1There  are  many  members  in  at  least  5  different  heat  shock  proteins  families  (HSP90,  HSP70,  HSP40,  chaperonins,  and  small  HSP).

Heat  shock  proteins  (HSP)  were  defined  as  proteins  encoded  by  genes  that  contain  so-­‐called  “heat  shock  elements  (HSE)  in  their  genes  that  are  regulated  by  the  “heat  shock  transcripNon  factor-­‐1  (HSF-­‐1)”

Kampinga  et  al.,    Cell  Stress  Chaperones.  (2009)  .

Chaperonins

(HspD/E+ CCT: 2+12 members)

sHsp

(HspB: 10 members)

Hsp70

(HspA+H: 13+4 members)

Hsp90

(HspC: 5 members)

Hsp40

(DnaJ: 50 members)

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

5

Page 7: Harm Kampinga - cssi-educational porto alegre - chaperone concepts

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

HSP  belong  to  the  group  of  Molecular  Chaperones

6

Page 8: Harm Kampinga - cssi-educational porto alegre - chaperone concepts

A  chaperone  is  an  adult  or  typically  older  person  who  accompanies  or  supervises  one  or  more  young,  unmarried  men  or  women  during  social  occasions  usually  with  the  specific  intent  of  prevenNng  inappropriate  social  or  sexual  interacNons  or  illegal  behavior  

(e.g.,  underage  drinking,  drug  use).  

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

HSP  belong  to  the  group  of  Molecular  Chaperones

6

Page 9: Harm Kampinga - cssi-educational porto alegre - chaperone concepts

A  chaperone  is  an  adult  or  typically  older  person  who  accompanies  or  supervises  one  or  more  young,  unmarried  men  or  women  during  social  occasions  usually  with  the  specific  intent  of  prevenNng  inappropriate  social  or  sexual  interacNons  or  illegal  behavior  

(e.g.,  underage  drinking,  drug  use).  

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

HSP  belong  to  the  group  of  Molecular  Chaperones

6

Page 10: Harm Kampinga - cssi-educational porto alegre - chaperone concepts

A  chaperone  is  an  adult  or  typically  older  person  who  accompanies  or  supervises  one  or  more  young,  unmarried  men  or  women  during  social  occasions  usually  with  the  specific  intent  of  prevenNng  inappropriate  social  or  sexual  interacNons  or  illegal  behavior  

(e.g.,  underage  drinking,  drug  use).  

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

HSP  belong  to  the  group  of  Molecular  Chaperones

6

Page 11: Harm Kampinga - cssi-educational porto alegre - chaperone concepts

A  chaperone  is  an  adult  or  typically  older  person  who  accompanies  or  supervises  one  or  more  young,  unmarried  men  or  women  during  social  occasions  usually  with  the  specific  intent  of  prevenNng  inappropriate  social  or  sexual  interacNons  or  illegal  behavior  

(e.g.,  underage  drinking,  drug  use).  

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

HSP  belong  to  the  group  of  Molecular  Chaperones

6

Page 12: Harm Kampinga - cssi-educational porto alegre - chaperone concepts

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

HSP  belong  to  the  group  of  Molecular  Chaperones

DefiniNon:  any  protein  (HSP  being   the  largest  group),  which   interacts,  stabilizes  or  helps  a  non-­‐naNve  protein  to  acquire   its  na?ve  conforma?on  but  is  not  present  in  the  final  funcNonal  structure

7

Page 13: Harm Kampinga - cssi-educational porto alegre - chaperone concepts

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

HSP  belong  to  the  group  of  Molecular  Chaperones

DefiniNon:  any  protein  (HSP  being   the  largest  group),  which   interacts,  stabilizes  or  helps  a  non-­‐naNve  protein  to  acquire   its  na?ve  conforma?on  but  is  not  present  in  the  final  funcNonal  structure

7

Page 14: Harm Kampinga - cssi-educational porto alegre - chaperone concepts

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

HSP  belong  to  the  group  of  Molecular  Chaperones

DefiniNon:  any  protein  (HSP  being   the  largest  group),  which   interacts,  stabilizes  or  helps  a  non-­‐naNve  protein  to  acquire   its  na?ve  conforma?on  but  is  not  present  in  the  final  funcNonal  structure

7

Page 15: Harm Kampinga - cssi-educational porto alegre - chaperone concepts

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

HSP  belong  to  the  group  of  Molecular  Chaperones

DefiniNon:  any  protein  (HSP  being   the  largest  group),  which   interacts,  stabilizes  or  helps  a  non-­‐naNve  protein  to  acquire   its  na?ve  conforma?on  but  is  not  present  in  the  final  funcNonal  structure

7

Page 16: Harm Kampinga - cssi-educational porto alegre - chaperone concepts

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

HSP  belong  to  the  group  of  Molecular  Chaperones

DefiniNon:  any  protein  (HSP  being   the  largest  group),  which   interacts,  stabilizes  or  helps  a  non-­‐naNve  protein  to  acquire   its  na?ve  conforma?on  but  is  not  present  in  the  final  funcNonal  structure

8

Page 17: Harm Kampinga - cssi-educational porto alegre - chaperone concepts

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

HSP  belong  to  the  group  of  Molecular  Chaperones

DefiniNon:  any  protein  (HSP  being   the  largest  group),  which   interacts,  stabilizes  or  helps  a  non-­‐naNve  protein  to  acquire   its  na?ve  conforma?on  but  is  not  present  in  the  final  funcNonal  structure

8

Page 18: Harm Kampinga - cssi-educational porto alegre - chaperone concepts

The   basic   chaperone   acNon   comprise   an   iteraNve   cycles   of   client   binding   to   and  release   from  HSPs   in  which  clients  may   fold  or  may  be  degraded   if   folding   is   not  successful  

Kampinga & Craig - Nature Reviews | Molecular Cell Biology

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

HSP  belong  to  the  group  of  Molecular  Chaperones

DefiniNon:  any  protein  (HSP  being   the  largest  group),  which   interacts,  stabilizes  or  helps  a  non-­‐naNve  protein  to  acquire   its  na?ve  conforma?on  but  is  not  present  in  the  final  funcNonal  structure

9

Page 19: Harm Kampinga - cssi-educational porto alegre - chaperone concepts

The   basic   chaperone   acNon   comprise   an   iteraNve   cycles   of   client   binding   to   and  release   from  HSPs   in  which  clients  may   fold  or  may  be  degraded   if   folding   is   not  successful  

Kampinga & Craig - Nature Reviews | Molecular Cell Biology

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

HSP  belong  to  the  group  of  Molecular  Chaperones

Such   acNon   is   required   for   assisted   folding   of   nascent   proteins   and   for   protein  translocaNon   (consNtuNvely   expressed   HSP)   and   for   refolding   of   stress-­‐unfolded  proteins  (consNtuNve  and  heat-­‐inducible  HSP).

DefiniNon:  any  protein  (HSP  being   the  largest  group),  which   interacts,  stabilizes  or  helps  a  non-­‐naNve  protein  to  acquire   its  na?ve  conforma?on  but  is  not  present  in  the  final  funcNonal  structure

9

Page 20: Harm Kampinga - cssi-educational porto alegre - chaperone concepts

The   basic   chaperone   acNon   comprise   an   iteraNve   cycles   of   client   binding   to   and  release   from  HSPs   in  which  clients  may   fold  or  may  be  degraded   if   folding   is   not  successful  

Kampinga & Craig - Nature Reviews | Molecular Cell Biology

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

HSP  belong  to  the  group  of  Molecular  Chaperones

nascent

Such   acNon   is   required   for   assisted   folding   of   nascent   proteins   and   for   protein  translocaNon   (consNtuNvely   expressed   HSP)   and   for   refolding   of   stress-­‐unfolded  proteins  (consNtuNve  and  heat-­‐inducible  HSP).

DefiniNon:  any  protein  (HSP  being   the  largest  group),  which   interacts,  stabilizes  or  helps  a  non-­‐naNve  protein  to  acquire   its  na?ve  conforma?on  but  is  not  present  in  the  final  funcNonal  structure

9

Page 21: Harm Kampinga - cssi-educational porto alegre - chaperone concepts

The   basic   chaperone   acNon   comprise   an   iteraNve   cycles   of   client   binding   to   and  release   from  HSPs   in  which  clients  may   fold  or  may  be  degraded   if   folding   is   not  successful  

Native stress

Kampinga & Craig - Nature Reviews | Molecular Cell Biology

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

HSP  belong  to  the  group  of  Molecular  Chaperones

nascent

Such   acNon   is   required   for   assisted   folding   of   nascent   proteins   and   for   protein  translocaNon   (consNtuNvely   expressed   HSP)   and   for   refolding   of   stress-­‐unfolded  proteins  (consNtuNve  and  heat-­‐inducible  HSP).

DefiniNon:  any  protein  (HSP  being   the  largest  group),  which   interacts,  stabilizes  or  helps  a  non-­‐naNve  protein  to  acquire   its  na?ve  conforma?on  but  is  not  present  in  the  final  funcNonal  structure

9

Page 22: Harm Kampinga - cssi-educational porto alegre - chaperone concepts

The   basic   chaperone   acNon   comprise   an   iteraNve   cycles   of   client   binding   to   and  release   from  HSPs   in  which  clients  may   fold  or  may  be  degraded   if   folding   is   not  successful  

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

HSP  belong  to  the  group  of  Molecular  Chaperones

Such   acNon   is   required   for   assisted   folding   of   nascent   proteins   and   for   protein  translocaNon   (consNtuNvely   expressed   HSP)   and   for   refolding   of   stress-­‐unfolded  proteins  (consNtuNve  and  heat-­‐inducible  HSP).

DefiniNon:  any  protein  (HSP  being   the  largest  group),  which   interacts,  stabilizes  or  helps  a  non-­‐naNve  protein  to  acquire   its  na?ve  conforma?on  but  is  not  present  in  the  final  funcNonal  structure

Heat-­‐induced  HSP  up-­‐regulaNon  (e.g.  Hsp70)  thus  protects  cells  against  the  toxicity  of  subsequent  heaNng  (thermotolerance).

10

Page 23: Harm Kampinga - cssi-educational porto alegre - chaperone concepts

The   basic   chaperone   acNon   comprise   an   iteraNve   cycles   of   client   binding   to   and  release   from  HSPs   in  which  clients  may   fold  or  may  be  degraded   if   folding   is   not  successful  

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

HSP  belong  to  the  group  of  Molecular  Chaperones

Such   acNon   is   required   for   assisted   folding   of   nascent   proteins   and   for   protein  translocaNon   (consNtuNvely   expressed   HSP)   and   for   refolding   of   stress-­‐unfolded  proteins  (consNtuNve  and  heat-­‐inducible  HSP).

DefiniNon:  any  protein  (HSP  being   the  largest  group),  which   interacts,  stabilizes  or  helps  a  non-­‐naNve  protein  to  acquire   its  na?ve  conforma?on  but  is  not  present  in  the  final  funcNonal  structure

Heat-­‐induced  HSP  up-­‐regulaNon  (e.g.  Hsp70)  thus  protects  cells  against  the  toxicity  of   subsequent   heaNng   (thermotolerance)   and   this   correlates   with   increased  refolding  capacity.

Luciferase

0 1 2hrs after HS

HS0

20

40

60

90

100%

luci

fera

se a

ctiv

ity + HSP

- HSP

11

Page 24: Harm Kampinga - cssi-educational porto alegre - chaperone concepts

The   basic   chaperone   acNon   comprise   an   iteraNve   cycles   of   client   binding   to   and  release   from  HSPs   in  which  clients  may   fold  or  may  be  degraded   if   folding   is   not  successful  

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

HSP  belong  to  the  group  of  Molecular  Chaperones

Such   acNon   is   required   for   assisted   folding   of   nascent   proteins   and   for   protein  translocaNon   (consNtuNvely   expressed   HSP)   and   for   refolding   of   stress-­‐unfolded  proteins  (consNtuNve  and  heat-­‐inducible  HSP).

DefiniNon:  any  protein  (HSP  being   the  largest  group),  which   interacts,  stabilizes  or  helps  a  non-­‐naNve  protein  to  acquire   its  na?ve  conforma?on  but  is  not  present  in  the  final  funcNonal  structure

Heat-­‐induced  HSP  up-­‐regulaNon  (e.g.  Hsp70)  thus  protects  cells  against  the  toxicity  of   subsequent   heaNng   (thermotolerance)   and   this   correlates   with   increased  refolding  capacity.

HSP70

chaperone  ac*vity

HSP70

toxicity  protec*on

Nollen et al | Mol Cell Biol 1999

12

Page 25: Harm Kampinga - cssi-educational porto alegre - chaperone concepts

CHAPERONE  ACTIVITYin  vitro  assays

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

13

Page 26: Harm Kampinga - cssi-educational porto alegre - chaperone concepts

CHAPERONE  ACTIVITYin  vitro  assays

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

1.  heat  substrate  +/-­‐  HSP2.  measure  substrate  aggrega*on

13

Page 27: Harm Kampinga - cssi-educational porto alegre - chaperone concepts

CHAPERONE  ACTIVITYin  vitro  assays

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

1.  heat  substrate  +/-­‐  HSP2.  measure  substrate  aggrega*on

light  sca<eringclient:  HSP

1:0

1:1

1:21:5

13

Page 28: Harm Kampinga - cssi-educational porto alegre - chaperone concepts

CHAPERONE  ACTIVITYin  vitro  assays

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

1.  heat  substrate  +/-­‐  HSP2.  measure  substrate  aggrega*on

1.  heat  substrate  +/-­‐  HSP2.  reincubate  at  37oC  +/-­‐  HSP  and  +/-­‐  ATP

3.  measure  ac*vity

light  sca<eringclient:  HSP

1:0

1:1

1:21:5

13

Page 29: Harm Kampinga - cssi-educational porto alegre - chaperone concepts

ac=vity  assaysclient:  HSP  /  ATP

1:0  /  no  ATP

1:5  /  no  ATP

1:1  /  with  ATP

1:2  /  with  ATP

1:5  /  with  ATP

CHAPERONE  ACTIVITYin  vitro  assays

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

1.  heat  substrate  +/-­‐  HSP2.  measure  substrate  aggrega*on

1.  heat  substrate  +/-­‐  HSP2.  reincubate  at  37oC  +/-­‐  HSP  and  +/-­‐  ATP

3.  measure  ac*vity

light  sca<eringclient:  HSP

1:0

1:1

1:21:5

13

Page 30: Harm Kampinga - cssi-educational porto alegre - chaperone concepts

ac=vity  assaysclient:  HSP  /  ATP

1:0  /  no  ATP

1:5  /  no  ATP

1:1  /  with  ATP

1:2  /  with  ATP

1:5  /  with  ATP

CHAPERONE  ACTIVITYin  vitro  assays

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

aggrega?on  preven?on(“holdase”)

1.  heat  substrate  +/-­‐  HSP2.  measure  substrate  aggrega*on

1.  heat  substrate  +/-­‐  HSP2.  reincubate  at  37oC  +/-­‐  HSP  and  +/-­‐  ATP

3.  measure  ac*vity

light  sca<eringclient:  HSP

1:0

1:1

1:21:5

13

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ac=vity  assaysclient:  HSP  /  ATP

1:0  /  no  ATP

1:5  /  no  ATP

1:1  /  with  ATP

1:2  /  with  ATP

1:5  /  with  ATP

CHAPERONE  ACTIVITYin  vitro  assays

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

aggrega?on  preven?on(“holdase”)

suppor?ng  refolding(“foldase”)

1.  heat  substrate  +/-­‐  HSP2.  measure  substrate  aggrega*on

1.  heat  substrate  +/-­‐  HSP2.  reincubate  at  37oC  +/-­‐  HSP  and  +/-­‐  ATP

3.  measure  ac*vity

light  sca<eringclient:  HSP

1:0

1:1

1:21:5

13

Page 32: Harm Kampinga - cssi-educational porto alegre - chaperone concepts

CHAPERONE  ACTIVITY

Hsp60/10

(HspD/E)

sHsp

(HspB)

Hsp70

(HspA)

Hsp90

(HspC)

Hsp40

(DnaJ)

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

14

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CHAPERONE  ACTIVITY

Hsp60/10

(HspD/E)

sHsp

(HspB)

Hsp70

(HspA)

Hsp90

(HspC)

Hsp40

(DnaJ)

ATP-independent‘holders’

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

14

Page 34: Harm Kampinga - cssi-educational porto alegre - chaperone concepts

CHAPERONE  ACTIVITY

Hsp60/10

(HspD/E)

sHsp

(HspB)

Hsp70

(HspA)

Hsp90

(HspC)

Hsp40

(DnaJ)

ATP-independent‘holders’

ATP-dependent‘holders & folders’

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

14

Page 35: Harm Kampinga - cssi-educational porto alegre - chaperone concepts

The Hsp70 machine

CHAPERONE  ACTIVITY

Hsp60/10

(HspD/E)

sHsp

(HspB)

Hsp70

(HspA)

Hsp90

(HspC)

Hsp40

(DnaJ)

ATP-independent‘holders’

ATP-dependent‘holders & folders’

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

14

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CHAPERONE  ACTIVITYThe  Hsp70  machine

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

15

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Kampinga & Craig - Nature Reviews | Molecular Cell Biology

CHAPERONE  ACTIVITYThe  Hsp70  machine

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

16

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CHAPERONE  ACTIVITYHsp90

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

Mayer  et  et  al.  200217

Page 39: Harm Kampinga - cssi-educational porto alegre - chaperone concepts

CHAPERONE  ACTIVITYHsp90

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

Mayer  et  et  al.  200218

Page 40: Harm Kampinga - cssi-educational porto alegre - chaperone concepts

CHAPERONE  ACTIVITYGroEL/ES  (Hsp60/10)

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

Ranson  et  al.  2001   Ranford  et  al.  2000  

19

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CHAPERONE  ACTIVITYGroEL/ES  (Hsp60/10)

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

Tang  et  al.  2006  20

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CHAPERONE  ACTIVITYsmall  Hsp

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

Jaya  et  al.  20069Kim  et  al  199821

Page 43: Harm Kampinga - cssi-educational porto alegre - chaperone concepts

CHAPERONE  ACTIVITYsmall  Hsp

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

Teydmer  et  al  2011

22

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Kampinga & Craig - Nature Reviews | Molecular Cell Biology

HSPC

CHAPERONE  NETWORK

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

23

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Kampinga & Craig - Nature Reviews | Molecular Cell Biology

HSPC

HSPD/E

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

CHAPERONE  NETWORK

24

Page 46: Harm Kampinga - cssi-educational porto alegre - chaperone concepts

Kampinga & Craig - Nature Reviews | Molecular Cell Biology

HSPC

HSPD/E

HSPB

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

CHAPERONE  NETWORK

25

Page 47: Harm Kampinga - cssi-educational porto alegre - chaperone concepts

Originally,   heat   shock   genes   (Ritossa,   1962)   and   later   heat   shock   proteins  (Tissieres  et  al  1974),  were  described  to  be  genes/proteins  of  which  the  expression  increased  aBer  an  heat  shock.  

Nowadays,   we   know   that   many   situaNon,   both   physiologically   and   stressful  condiNons  can  acNvate  HSF-­‐1There  are  many  members  in  at  least  5  different  heat  shock  proteins  families  (HSP90,  HSP70,  HSP40,  chaperonins,  and  small  HSP)  that  work  in  a  cellular  network.

Heat  shock  proteins  (HSP)  were  defined  as  proteins  encoded  by  genes  that  contain  so-­‐called  “heat  shock  elements  (HSE)  in  their  genes  that  are  regulated  by  the  “heat  shock  transcripNon  factor-­‐1  (HSF-­‐1)”

Kampinga  et  al.,    Cell  Stress  Chaperones.  (2009)  .

Chaperonins

(HspD/E+ CCT: 2+12 members)

sHsp

(HspB: 10 members)

Hsp70

(HspA+H: 13+4 members)

Hsp90

(HspC: 5 members)

Hsp40

(DnaJ: 50 members)

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

26

Page 48: Harm Kampinga - cssi-educational porto alegre - chaperone concepts

Originally,   heat   shock   genes   (Ritossa,   1962)   and   later   heat   shock   proteins  (Tissieres  et  al  1974),  were  described  to  be  genes/proteins  of  which  the  expression  increased  aBer  an  heat  shock.  

Nowadays,   we   know   that   many   situaNon,   both   physiologically   and   stressful  condiNons  can  acNvate  HSF-­‐1There  are  many  members  in  at  least  5  different  heat  shock  proteins  families  (HSP90,  HSP70,  HSP40,  chaperonins,  and  small  HSP)  that  work  in  a  cellular  network.

Heat  shock  proteins  (HSP)  were  defined  as  proteins  encoded  by  genes  that  contain  so-­‐called  “heat  shock  elements  (HSE)  in  their  genes  that  are  regulated  by  the  “heat  shock  transcripNon  factor-­‐1  (HSF-­‐1)”

Kampinga  et  al.,    Cell  Stress  Chaperones.  (2009)  .

Chaperonins

(HspD/E+ CCT: 2+12 members)

sHsp

(HspB: 10 members)

Hsp70

(HspA+H: 13+4 members)

Hsp90

(HspC: 5 members)

Hsp40

(DnaJ: 50 members)

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

But why do humans have so many HSPs?

26

Page 49: Harm Kampinga - cssi-educational porto alegre - chaperone concepts

Originally,   heat   shock   genes   (Ritossa,   1962)   and   later   heat   shock   proteins  (Tissieres  et  al  1974),  were  described  to  be  genes/proteins  of  which  the  expression  increased  aBer  an  heat  shock.  

Nowadays,   we   know   that   many   situaNon,   both   physiologically   and   stressful  condiNons  can  acNvate  HSF-­‐1There  are  many  members  in  at  least  5  different  heat  shock  proteins  families  (HSP90,  HSP70,  HSP40,  chaperonins,  and  small  HSP)  that  work  in  a  cellular  network.

Heat  shock  proteins  (HSP)  were  defined  as  proteins  encoded  by  genes  that  contain  so-­‐called  “heat  shock  elements  (HSE)  in  their  genes  that  are  regulated  by  the  “heat  shock  transcripNon  factor-­‐1  (HSF-­‐1)”

Kampinga  et  al.,    Cell  Stress  Chaperones.  (2009)  .

Chaperonins

(HspD/E+ CCT: 2+12 members)

sHsp

(HspB: 10 members)

Hsp70

(HspA+H: 13+4 members)

Hsp90

(HspC: 5 members)

Hsp40

(DnaJ: 50 members)

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

But why do humans have so many HSPs?1. compartmentalization (cyt/nuc-HSR; ER-UPR; mit-UPR; Per-UPR?)

26

Page 50: Harm Kampinga - cssi-educational porto alegre - chaperone concepts

Originally,   heat   shock   genes   (Ritossa,   1962)   and   later   heat   shock   proteins  (Tissieres  et  al  1974),  were  described  to  be  genes/proteins  of  which  the  expression  increased  aBer  an  heat  shock.  

Nowadays,   we   know   that   many   situaNon,   both   physiologically   and   stressful  condiNons  can  acNvate  HSF-­‐1There  are  many  members  in  at  least  5  different  heat  shock  proteins  families  (HSP90,  HSP70,  HSP40,  chaperonins,  and  small  HSP)  that  work  in  a  cellular  network.

Heat  shock  proteins  (HSP)  were  defined  as  proteins  encoded  by  genes  that  contain  so-­‐called  “heat  shock  elements  (HSE)  in  their  genes  that  are  regulated  by  the  “heat  shock  transcripNon  factor-­‐1  (HSF-­‐1)”

Kampinga  et  al.,    Cell  Stress  Chaperones.  (2009)  .

Chaperonins

(HspD/E+ CCT: 2+12 members)

sHsp

(HspB: 10 members)

Hsp70

(HspA+H: 13+4 members)

Hsp90

(HspC: 5 members)

Hsp40

(DnaJ: 50 members)

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

But why do humans have so many HSPs?1. compartmentalization (cyt/nuc-HSR; ER-UPR; mit-UPR; Per-UPR?)

2. differential regulation (e.g., many HSPs are NOT heat-/HSF-1 regulated)

26

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Hageman  et  al  2011  .

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

But why do humans have so many HSPs?1. compartmentalization (cyt/nuc-HSR; ER-UPR; mit-UPR; Per-UPR?)

2. differential regulation (e.g., many HSPs are NOT heat-/HSF-1 regulated)

DNAJB5 = 0.1%

DNAJB6 = 2.3%

DNAJB7 = 0.3%

DNAJA1 = 4.2%

DNAJA2 = 1.4%

DNAJA3 = 2.3%

DNAJA4 = 0.0%

DNAJB1 = 2.8%

GAPD = 82.9%

DNAJB2 = 0.0%

DNAJB4 = 0.3%

DNAJB8 = 0.0%

DNAJB9 = 0.2%

DNAJB11 = 2.4%

DNAJB12 = 0.7%

-HS

HS

DNAJA1 = 2.5%

DNAJA2 = 0.4%

DNAJA3 = 0.4%

DNAJA4 = 0.0%

DNAJB2 = 0.0%

DNAJB4 = 0.6%

DNAJB5 = 0.0%

DNAJB6 = 2.4%

DNAJB7 = 0.1%

DNAJB8 = 0.0%

DNAJB9 = 0.3%

DNAJB11 = 2.0%

DNAJB12 = 0.1%

DNAJB1 = 62.1%

GAPD = 29.0%

+HS

27

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Kampinga  et  al.,    Cell  Stress  Chaperones.  (2009)  .

Chaperonins

(HspD/E+ CCT: 2+12 members)

sHsp

(HspB: 10 members)

Hsp70

(HspA+H: 13+4 members)

Hsp90

(HspC: 5 members)

Hsp40

(DnaJ: 50 members)

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

But why do humans have so many HSPs?1. compartmentalization (cyt/nuc-HSR; ER-UPR; mit-UPR; Per-UPR?)

2. differential regulation (e.g., many HSPs are NOT heat-/HSF-1 regulated)

3. functional specificity (structural differences)

28

Page 53: Harm Kampinga - cssi-educational porto alegre - chaperone concepts

Kampinga  et  al.,    Cell  Stress  Chaperones.  (2009)  .

Chaperonins

(HspD/E+ CCT: 2+12 members)

sHsp

(HspB: 10 members)

Hsp70

(HspA+H: 13+4 members)

Hsp90

(HspC: 5 members)

Hsp40

(DnaJ: 50 members)

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

But why do humans have so many HSPs?1. compartmentalization (cyt/nuc-HSR; ER-UPR; mit-UPR; Per-UPR?)

2. differential regulation (e.g., many HSPs are NOT heat-/HSF-1 regulated)

3. functional specificity (structural differences)

28

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Kampinga & Craig - Nature Reviews | Molecular Cell Biology

FUNCTIONAL  SPECIFICITY  OF  THE  HSP70  MACHINE

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

29

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The  Hsp70  machine  is  involved  in  many  different  biochemical  and  biological  funcNons  ranging  from  co-­‐translaNonal  folding,  to  protein  translocaNon  across  membranes,  from  protein  

remodeling  to  protein  degradaNon.

Kampinga & Craig - Nature Reviews | Molecular Cell Biology

FUNCTIONAL  SPECIFICITY  OF  THE  HSP70  MACHINE

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

29

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The  Hsp70  machine  is  involved  in  many  different  biochemical  and  biological  funcNons  ranging  from  co-­‐translaNonal  folding,  to  protein  translocaNon  across  membranes,  from  protein  

remodeling  to  protein  degradaNon.

1.  Role  expansion  HSP70  family

Kampinga & Craig - Nature Reviews | Molecular Cell Biology

FUNCTIONAL  SPECIFICITY  OF  THE  HSP70  MACHINE

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

29

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The  Hsp70  machine  is  involved  in  many  different  biochemical  and  biological  funcNons  ranging  from  co-­‐translaNonal  folding,  to  protein  translocaNon  across  membranes,  from  protein  

remodeling  to  protein  degradaNon.

1.  Role  expansion  HSP70  family

Ssa1-4; Ssb1,2 HSPA1,2,6,7,8Kar2 HSPA5Ssc1;SSq1;Emc10

Yeast Human 0 200 400 600 800 1000

HSPA9HSPA12A,B

Ssz1 HSPA14

Hsp70

Cytosol

ER

Cytosol

Cytosol

Mitochondria

Kampinga & Craig - Nature Reviews | Molecular Cell Biology

FUNCTIONAL  SPECIFICITY  OF  THE  HSP70  MACHINE

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

29

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The  Hsp70  machine  is  involved  in  many  different  biochemical  and  biological  funcNons  ranging  from  co-­‐translaNonal  folding,  to  protein  translocaNon  across  membranes,  from  protein  

remodeling  to  protein  degradaNon.

1.  Role  expansion  HSP70  family

Ssa1-4; Ssb1,2 HSPA1,2,6,7,8Kar2 HSPA5Ssc1;SSq1;Emc10

Yeast Human 0 200 400 600 800 1000

HSPA9HSPA12A,B

Ssz1 HSPA14

Hsp70

Cytosol

ER

Cytosol

Cytosol

Mitochondria

Kampinga & Craig - Nature Reviews | Molecular Cell Biology

Hsp70  are  structural  almost  idenNcal  (same  domain  structure)  Hsp70  show  all  similar  biochemical  acNvity  (an  ATP-­‐dependent  client  protein  binding/release  cycle).  

Except  HSPA14  that  lacks  substrate  binding

FUNCTIONAL  SPECIFICITY  OF  THE  HSP70  MACHINE

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

29

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Kampinga & Craig - Nature Reviews | Molecular Cell Biology

The  Hsp70  machine  is  involved  in  many  different  biochemical  and  biological  funcNons  ranging  from  co-­‐translaNonal  folding,  to  protein  translocaNon  across  membranes,  from  protein  

remodeling  to  protein  degradaNon.

FUNCTIONAL  SPECIFICITY  OF  THE  HSP70  MACHINE

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

30

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Kampinga & Craig - Nature Reviews | Molecular Cell Biology

The  Hsp70  machine  is  involved  in  many  different  biochemical  and  biological  funcNons  ranging  from  co-­‐translaNonal  folding,  to  protein  translocaNon  across  membranes,  from  protein  

remodeling  to  protein  degradaNon.

FUNCTIONAL  SPECIFICITY  OF  THE  HSP70  MACHINE

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

2.  Role  expansion  DNAJ  protein  family

30

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0Yeast Human 100 200 300 400 500 600

Ydj1 DNAJA1

DNAJA3

Xdj1 DNAJA2;A4

DNAJB4;B5DNAJB11DNAJB9DNAJB2a,2b

DNAJB6a,6b

DNAJB12a,12bDNAJB14a,14bDNAJC18

DNAJC21Jjj1DNAJC24

DNAJC10DNAJC16

DNAJC26DNAJC27DNAJC3DNAJC7

DNAJC29DNAJC14DNAJC22

DNAJB13

Jjj3DNAJC5,5b,5g

DNAJB8DNAJB7

Apj1Scj1Mdj1

DNAJB1Sis1

DNAJC20Jac1

Jem1

DNAJC17Cwc23

Swa2

Djp1Caj1

Erj5

Promiscous client binding

Selective client binding

Client binding unclear

590/531

793

782

45794306

702

DNAJC6668

913

1311

0Yeast Human 100 200 300 400 500 600

Ydj1 DNAJA1

DNAJA3

Xdj1 DNAJA2;A4

DNAJB4;B5DNAJB11DNAJB9DNAJB2a,2b

DNAJB6a,6b

DNAJB12a,12bDNAJB14a,14bDNAJC18

DNAJC21Jjj1DNAJC24

DNAJC10DNAJC16

DNAJC26DNAJC27DNAJC3DNAJC7

DNAJC29DNAJC14DNAJC22

DNAJB13

Jjj3DNAJC5,5b,5g

DNAJB8DNAJB7

Apj1Scj1Mdj1

DNAJB1Sis1

DNAJC20Jac1

Jem1

DNAJC17Cwc23

Swa2

Djp1Caj1

Erj5

Promiscous client binding

Selective client binding

Client binding unclear

590/531

793

782

45794306

702

DNAJC6668

913

1311

FuncNonal  classificaNon  DNAJ  proteins1:  Client  binding  and  client  delivery  to  Hsp70

a)  promiscuous  client  bindingb)  selecNve  client  binding

2:  No  client  binding,  just  ATPase  sNmulaNona)  tethering  Hsp70  to  a  locaNon/  a  posiNonb)  no  tethering

The  Hsp70  machine  is  involved  in  many  different  biochemical  and  biological  funcNons  ranging  from  co-­‐translaNonal  folding,  to  protein  translocaNon  across  membranes,  from  protein  

remodeling  to  protein  degradaNon.

2.  Role  expansion  DNAJ  protein  family

FUNCTIONAL  SPECIFICITY  OF  THE  HSP70  MACHINE

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

Kampinga & Craig - Nature Reviews | Molecular Cell Biology

31

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0Yeast Human 100 200 300 400 500 600

Ydj1 DNAJA1

DNAJA3

Xdj1 DNAJA2;A4

DNAJB4;B5DNAJB11DNAJB9DNAJB2a,2b

DNAJB6a,6b

DNAJB12a,12bDNAJB14a,14bDNAJC18

DNAJC21Jjj1DNAJC24

DNAJC10DNAJC16

DNAJC26DNAJC27DNAJC3DNAJC7

DNAJC29DNAJC14DNAJC22

DNAJB13

Jjj3DNAJC5,5b,5g

DNAJB8DNAJB7

Apj1Scj1Mdj1

DNAJB1Sis1

DNAJC20Jac1

Jem1

DNAJC17Cwc23

Swa2

Djp1Caj1

Erj5

Promiscous client binding

Selective client binding

Client binding unclear

590/531

793

782

45794306

702

DNAJC6668

913

1311

0Yeast Human 100 200 300 400 500 600

Ydj1 DNAJA1

DNAJA3

Xdj1 DNAJA2;A4

DNAJB4;B5DNAJB11DNAJB9DNAJB2a,2b

DNAJB6a,6b

DNAJB12a,12bDNAJB14a,14bDNAJC18

DNAJC21Jjj1DNAJC24

DNAJC10DNAJC16

DNAJC26DNAJC27DNAJC3DNAJC7

DNAJC29DNAJC14DNAJC22

DNAJB13

Jjj3DNAJC5,5b,5g

DNAJB8DNAJB7

Apj1Scj1Mdj1

DNAJB1Sis1

DNAJC20Jac1

Jem1

DNAJC17Cwc23

Swa2

Djp1Caj1

Erj5

Promiscous client binding

Selective client binding

Client binding unclear

590/531

793

782

45794306

702

DNAJC6668

913

1311

FuncNonal  classificaNon  DNAJ  proteins1:  Client  binding  and  client  delivery  to  Hsp70

a)  promiscuous  client  bindingb)  selecNve  client  binding

2:  No  client  binding,  just  ATPase  sNmulaNona)  tethering  Hsp70  to  a  locaNon/  a  posiNonb)  no  tethering

The  Hsp70  machine  is  involved  in  many  different  biochemical  and  biological  funcNons  ranging  from  co-­‐translaNonal  folding,  to  protein  translocaNon  across  membranes,  from  protein  

remodeling  to  protein  degradaNon.

2.  Role  expansion  DNAJ  protein  family

FUNCTIONAL  SPECIFICITY  OF  THE  HSP70  MACHINE

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

Kampinga & Craig - Nature Reviews | Molecular Cell Biology

31

Page 63: Harm Kampinga - cssi-educational porto alegre - chaperone concepts

0Yeast Human 100 200 300 400 500 600

Ydj1 DNAJA1

DNAJA3

Xdj1 DNAJA2;A4

DNAJB4;B5DNAJB11DNAJB9DNAJB2a,2b

DNAJB6a,6b

DNAJB12a,12bDNAJB14a,14bDNAJC18

DNAJC21Jjj1DNAJC24

DNAJC10DNAJC16

DNAJC26DNAJC27DNAJC3DNAJC7

DNAJC29DNAJC14DNAJC22

DNAJB13

Jjj3DNAJC5,5b,5g

DNAJB8DNAJB7

Apj1Scj1Mdj1

DNAJB1Sis1

DNAJC20Jac1

Jem1

DNAJC17Cwc23

Swa2

Djp1Caj1

Erj5

Promiscous client binding

Selective client binding

Client binding unclear

590/531

793

782

45794306

702

DNAJC6668

913

1311

0Yeast Human 100 200 300 400 500 600

Ydj1 DNAJA1

DNAJA3

Xdj1 DNAJA2;A4

DNAJB4;B5DNAJB11DNAJB9DNAJB2a,2b

DNAJB6a,6b

DNAJB12a,12bDNAJB14a,14bDNAJC18

DNAJC21Jjj1DNAJC24

DNAJC10DNAJC16

DNAJC26DNAJC27DNAJC3DNAJC7

DNAJC29DNAJC14DNAJC22

DNAJB13

Jjj3DNAJC5,5b,5g

DNAJB8DNAJB7

Apj1Scj1Mdj1

DNAJB1Sis1

DNAJC20Jac1

Jem1

DNAJC17Cwc23

Swa2

Djp1Caj1

Erj5

Promiscous client binding

Selective client binding

Client binding unclear

590/531

793

782

45794306

702

DNAJC6668

913

1311

FuncNonal  classificaNon  DNAJ  proteins1:  Client  binding  and  client  delivery  to  Hsp70

a)  promiscuous  client  bindingb)  selecNve  client  binding

2:  No  client  binding,  just  ATPase  sNmulaNona)  tethering  Hsp70  to  a  locaNon/  a  posiNonb)  no  tethering

The  Hsp70  machine  is  involved  in  many  different  biochemical  and  biological  funcNons  ranging  from  co-­‐translaNonal  folding,  to  protein  translocaNon  across  membranes,  from  protein  

remodeling  to  protein  degradaNon.

2.  Role  expansion  DNAJ  protein  family

FUNCTIONAL  SPECIFICITY  OF  THE  HSP70  MACHINE

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

Kampinga & Craig - Nature Reviews | Molecular Cell Biology

31

Page 64: Harm Kampinga - cssi-educational porto alegre - chaperone concepts

0Yeast Human 100 200 300 400 500 600

Ydj1 DNAJA1

DNAJA3

Xdj1 DNAJA2;A4

DNAJB4;B5DNAJB11DNAJB9DNAJB2a,2b

DNAJB6a,6b

DNAJB12a,12bDNAJB14a,14bDNAJC18

DNAJC21Jjj1DNAJC24

DNAJC10DNAJC16

DNAJC26DNAJC27DNAJC3DNAJC7

DNAJC29DNAJC14DNAJC22

DNAJB13

Jjj3DNAJC5,5b,5g

DNAJB8DNAJB7

Apj1Scj1Mdj1

DNAJB1Sis1

DNAJC20Jac1

Jem1

DNAJC17Cwc23

Swa2

Djp1Caj1

Erj5

Promiscous client binding

Selective client binding

Client binding unclear

590/531

793

782

45794306

702

DNAJC6668

913

1311

0Yeast Human 100 200 300 400 500 600

Ydj1 DNAJA1

DNAJA3

Xdj1 DNAJA2;A4

DNAJB4;B5DNAJB11DNAJB9DNAJB2a,2b

DNAJB6a,6b

DNAJB12a,12bDNAJB14a,14bDNAJC18

DNAJC21Jjj1DNAJC24

DNAJC10DNAJC16

DNAJC26DNAJC27DNAJC3DNAJC7

DNAJC29DNAJC14DNAJC22

DNAJB13

Jjj3DNAJC5,5b,5g

DNAJB8DNAJB7

Apj1Scj1Mdj1

DNAJB1Sis1

DNAJC20Jac1

Jem1

DNAJC17Cwc23

Swa2

Djp1Caj1

Erj5

Promiscous client binding

Selective client binding

Client binding unclear

590/531

793

782

45794306

702

DNAJC6668

913

1311

FuncNonal  classificaNon  DNAJ  proteins1:  Client  binding  and  client  delivery  to  Hsp70

a)  promiscuous  client  bindingb)  selecNve  client  binding

2:  No  client  binding,  just  ATPase  sNmulaNona)  tethering  Hsp70  to  a  locaNon/  a  posiNonb)  no  tethering

The  Hsp70  machine  is  involved  in  many  different  biochemical  and  biological  funcNons  ranging  from  co-­‐translaNonal  folding,  to  protein  translocaNon  across  membranes,  from  protein  

remodeling  to  protein  degradaNon.

2.  Role  expansion  DNAJ  protein  family

FUNCTIONAL  SPECIFICITY  OF  THE  HSP70  MACHINE

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

Kampinga & Craig - Nature Reviews | Molecular Cell Biology

31

Page 65: Harm Kampinga - cssi-educational porto alegre - chaperone concepts

0Yeast Human 100 200 300 400 500 600

Ydj1 DNAJA1

DNAJA3

Xdj1 DNAJA2;A4

DNAJB4;B5DNAJB11DNAJB9DNAJB2a,2b

DNAJB6a,6b

DNAJB12a,12bDNAJB14a,14bDNAJC18

DNAJC21Jjj1DNAJC24

DNAJC10DNAJC16

DNAJC26DNAJC27DNAJC3DNAJC7

DNAJC29DNAJC14DNAJC22

DNAJB13

Jjj3DNAJC5,5b,5g

DNAJB8DNAJB7

Apj1Scj1Mdj1

DNAJB1Sis1

DNAJC20Jac1

Jem1

DNAJC17Cwc23

Swa2

Djp1Caj1

Erj5

Promiscous client binding

Selective client binding

Client binding unclear

590/531

793

782

45794306

702

DNAJC6668

913

1311

0Yeast Human 100 200 300 400 500 600

Ydj1 DNAJA1

DNAJA3

Xdj1 DNAJA2;A4

DNAJB4;B5DNAJB11DNAJB9DNAJB2a,2b

DNAJB6a,6b

DNAJB12a,12bDNAJB14a,14bDNAJC18

DNAJC21Jjj1DNAJC24

DNAJC10DNAJC16

DNAJC26DNAJC27DNAJC3DNAJC7

DNAJC29DNAJC14DNAJC22

DNAJB13

Jjj3DNAJC5,5b,5g

DNAJB8DNAJB7

Apj1Scj1Mdj1

DNAJB1Sis1

DNAJC20Jac1

Jem1

DNAJC17Cwc23

Swa2

Djp1Caj1

Erj5

Promiscous client binding

Selective client binding

Client binding unclear

590/531

793

782

45794306

702

DNAJC6668

913

1311

FuncNonal  classificaNon  DNAJ  proteins1:  Client  binding  and  client  delivery  to  Hsp70

a)  promiscuous  client  bindingb)  selecNve  client  binding

2:  No  client  binding,  just  ATPase  sNmulaNona)  tethering  Hsp70  to  a  locaNon/  a  posiNonb)  no  tethering

The  Hsp70  machine  is  involved  in  many  different  biochemical  and  biological  funcNons  ranging  from  co-­‐translaNonal  folding,  to  protein  translocaNon  across  membranes,  from  protein  

remodeling  to  protein  degradaNon.

2.  Role  expansion  DNAJ  protein  family

FUNCTIONAL  SPECIFICITY  OF  THE  HSP70  MACHINE

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

Kampinga & Craig - Nature Reviews | Molecular Cell Biology

31

Page 66: Harm Kampinga - cssi-educational porto alegre - chaperone concepts

Even  within  “promiscuous  client  binders”,  there  are  large  structural  differences

J-domainG/F rich domainCTD1 with ZFLRCTD2Dimerization domain

Putative CTD2CTD1 lacking ZFLR

TransmembranedomainPutative CTD1Ubiquitin-interactingmotifCoiled coilCTD1 with HDAC BDUnidenti!ed proteinmotif

0Yeast Human 100 200 300 400 500 600

Ydj1 DNAJA1

DNAJA3

Xdj1 DNAJA2;A4

DNAJB4;B5DNAJB11DNAJB9DNAJB2a,2b

DNAJB6a,6b

DNAJB12a,12bDNAJB14a,14bDNAJC18

DNAJB8DNAJB7

Apj1Scj1Mdj1

DNAJB1Sis1

Djp1Caj1

Erj5

Promiscous client binding

The  Hsp70  machine  is  involved  in  many  different  biochemical  and  biological  funcNons  ranging  from  co-­‐translaNonal  folding,  to  protein  translocaNon  across  membranes,  from  protein  

remodeling  to  protein  degradaNon.

2.  Role  expansion  DNAJ  protein  family

FUNCTIONAL  SPECIFICITY  OF  THE  HSP70  MACHINE

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

Kampinga & Craig - Nature Reviews | Molecular Cell Biology

32

Page 67: Harm Kampinga - cssi-educational porto alegre - chaperone concepts

Even  within  “promiscuous  client  binders”,  there  are  large  structural  differences

J-domainG/F rich domainCTD1 with ZFLRCTD2Dimerization domain

Putative CTD2CTD1 lacking ZFLR

TransmembranedomainPutative CTD1Ubiquitin-interactingmotifCoiled coilCTD1 with HDAC BDUnidenti!ed proteinmotif

0Yeast Human 100 200 300 400 500 600

Ydj1 DNAJA1

DNAJA3

Xdj1 DNAJA2;A4

DNAJB4;B5DNAJB11DNAJB9DNAJB2a,2b

DNAJB6a,6b

DNAJB12a,12bDNAJB14a,14bDNAJC18

DNAJB8DNAJB7

Apj1Scj1Mdj1

DNAJB1Sis1

Djp1Caj1

Erj5

Promiscous client binding

The  Hsp70  machine  is  involved  in  many  different  biochemical  and  biological  funcNons  ranging  from  co-­‐translaNonal  folding,  to  protein  translocaNon  across  membranes,  from  protein  

remodeling  to  protein  degradaNon.

2.  Role  expansion  DNAJ  protein  family

FUNCTIONAL  SPECIFICITY  OF  THE  HSP70  MACHINE

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

Kampinga & Craig - Nature Reviews | Molecular Cell Biology

32

Page 68: Harm Kampinga - cssi-educational porto alegre - chaperone concepts

Even  within  “promiscuous  client  binders”,  there  are  large  structural  differences

J-domainG/F rich domainCTD1 with ZFLRCTD2Dimerization domain

Putative CTD2CTD1 lacking ZFLR

TransmembranedomainPutative CTD1Ubiquitin-interactingmotifCoiled coilCTD1 with HDAC BDUnidenti!ed proteinmotif

0Yeast Human 100 200 300 400 500 600

Ydj1 DNAJA1

DNAJA3

Xdj1 DNAJA2;A4

DNAJB4;B5DNAJB11DNAJB9DNAJB2a,2b

DNAJB6a,6b

DNAJB12a,12bDNAJB14a,14bDNAJC18

DNAJB8DNAJB7

Apj1Scj1Mdj1

DNAJB1Sis1

Djp1Caj1

Erj5

Promiscous client binding

The  Hsp70  machine  is  involved  in  many  different  biochemical  and  biological  funcNons  ranging  from  co-­‐translaNonal  folding,  to  protein  translocaNon  across  membranes,  from  protein  

remodeling  to  protein  degradaNon.

2.  Role  expansion  DNAJ  protein  family

FUNCTIONAL  SPECIFICITY  OF  THE  HSP70  MACHINE

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

Kampinga & Craig - Nature Reviews | Molecular Cell Biology

32

Page 69: Harm Kampinga - cssi-educational porto alegre - chaperone concepts

Westhoff et al., Current Biology 15 (2005) 1058

DNAJB2a,2bJ-domain G/F putative CTD1 UIM UIMJ-domain G/F CTD1 w/o ZnF DDCTD2

Sis1

HSPA1A

C or DNAJB1

HSPA1A + DNAJB1

Michels  et  al.,  J.  Biol.  Chem  1997

DNAJB1:  promotes  refolding

The  Hsp70  machine  is  involved  in  many  different  biochemical  and  biological  funcNons  ranging  from  co-­‐translaNonal  folding,  to  protein  translocaNon  across  membranes,  from  protein  

remodeling  to  protein  degradaNon.

2.  Role  expansion  DNAJ  protein  family

FUNCTIONAL  SPECIFICITY  OF  THE  HSP70  MACHINE

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

Howarth  et  al.,  Mol.  Ther.  15  (2007)  1100

Aver

age

RLU

(nor

mal

ized

to c

ontro

lun

dena

ture

d va

lues

) 80

60

40

20

00 15 30

Recovery time (minutes)45 60

HSPA1A + DNAJB1

HSPA1A + DNAJB2aHSPA1A + DNAJB2b

control

DNAJB2:  promotes  degradaNon

33

Page 70: Harm Kampinga - cssi-educational porto alegre - chaperone concepts

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

The  Hsp70  machine  is  involved  in  many  different  biochemical  and  biological  funcNons  ranging  from  co-­‐translaNonal  folding,  to  protein  translocaNon  across  membranes,  from  protein  

remodeling  to  protein  degradaNon.

2.  Role  expansion  DNAJ  protein  family-­‐  client  specificity-­‐  client  handling  

FUNCTIONAL  SPECIFICITY  OF  THE  HSP70  MACHINE

Kampinga & Craig - Nature Reviews | Molecular Cell Biology

34

Page 71: Harm Kampinga - cssi-educational porto alegre - chaperone concepts

The  Hsp70  machine  is  involved  in  many  different  biochemical  and  biological  funcNons  ranging  from  co-­‐translaNonal  folding,  to  protein  translocaNon  across  membranes,  from  protein  

remodeling  to  protein  degradaNon.

3.  Role  expansion  NEF  protein  families

FUNCTIONAL  SPECIFICITY  OF  THE  HSP70  MACHINE

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

Kampinga & Craig - Nature Reviews | Molecular Cell Biology

35

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Sse1,2HSPH1,2,3

BAP

BAG1BAG1L

BAG2BAG3BAG4BAG5BAG6

Lhs1

Snl1

HSPH4

HSPBP1Fes1Sil1 (Sls1*)

NEFs Yeast Human 0 200 400 600 800 1000

Three  groups  nucleoNde  exchange  factors  (NEF)  of  Hsp70s  exist  in  eukaryotes  that  show  considerable  structural  divergency.

Since,  they  generally  act  at  a  step  aBer  substrate  recogniNon  and  cannot  bind  substrates  themselves  (except  for  HSPH),  their  role  seems  primarily  to  

determining  client  fate,  i.e:folding:  HSPH  and  HSPBP1/BAP  versus  degrada?on:  BAG

The  Hsp70  machine  is  involved  in  many  different  biochemical  and  biological  funcNons  ranging  from  co-­‐translaNonal  folding,  to  protein  translocaNon  across  membranes,  from  protein  

remodeling  to  protein  degradaNon.

3.  Role  expansion  NEF  protein  families

FUNCTIONAL  SPECIFICITY  OF  THE  HSP70  MACHINE

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

Kampinga & Craig - Nature Reviews | Molecular Cell Biology

36

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4.  networks  interac?ons

The  Hsp70  machine  is  involved  in  many  different  biochemical  and  biological  funcNons  ranging  from  co-­‐translaNonal  folding,  to  protein  translocaNon  across  membranes,  from  protein  

remodeling  to  protein  degradaNon.

FUNCTIONAL  SPECIFICITY  OF  THE  HSP70  MACHINE

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

Kampinga & Craig - Nature Reviews | Molecular Cell Biology

HSPC

HSPD/E

HSPB

CHIP

HIP

37

Page 74: Harm Kampinga - cssi-educational porto alegre - chaperone concepts

4.  networks  interac?ons

The  Hsp70  machine  is  involved  in  many  different  biochemical  and  biological  funcNons  ranging  from  co-­‐translaNonal  folding,  to  protein  translocaNon  across  membranes,  from  protein  

remodeling  to  protein  degradaNon.

FUNCTIONAL  SPECIFICITY  OF  THE  HSP70  MACHINE

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

Kampinga & Craig - Nature Reviews | Molecular Cell Biology

HSPC

HSPD/E

HSPB

CHIP

HIP

37

Page 75: Harm Kampinga - cssi-educational porto alegre - chaperone concepts

The   basic   chaperone   acNon   comprise   an   iteraNve   cycles   of   client   binding   to   and  release   from  HSPs   in  which  clients  may   fold  or  may  be  degraded   if   folding   is   not  successful  

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

HSP  belong  to  the  group  of  Molecular  Chaperones

Such   acNon   is   required   for   assisted   folding   of   nascent   proteins   and   for   protein  translocaNon   (consNtuNvely   expressed   HSP)   and   for   refolding   of   stress-­‐unfolded  proteins  (consNtuNve  and  heat-­‐inducible  HSP).

DefiniNon:  any  protein  (HSP  being   the  largest  group),  which   interacts,  stabilizes  or  helps  a  non-­‐naNve  protein  to  acquire   its  na?ve  conforma?on  but  is  not  present  in  the  final  funcNonal  structure

Heat-­‐induced  HSP  up-­‐regulaNon  (e.g.  Hsp70)  thus  protects  cells  against  the  toxicity  of   subsequent   heaNng   (thermotolerance)   and   this   correlates   with   increased  refolding  capacity.

The  diverse  HSP  families,  their  members  and  mutual  interacNons  ensure  funcNonal  specificity  to  maintain  the  cellular  protein  homeostasis  (proteostasis)

nascent

Native stress

38

Page 76: Harm Kampinga - cssi-educational porto alegre - chaperone concepts

The   basic   chaperone   acNon   comprise   an   iteraNve   cycles   of   client   binding   to   and  release   from  HSPs   in  which  clients  may   fold  or  may  be  degraded   if   folding   is   not  successful  

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

HSP  belong  to  the  group  of  Molecular  Chaperones

Such   acNon   is   required   for   assisted   folding   of   nascent   proteins   and   for   protein  translocaNon   (consNtuNvely   expressed   HSP)   and   for   refolding   of   stress-­‐unfolded  proteins  (consNtuNve  and  heat-­‐inducible  HSP).

DefiniNon:  any  protein  (HSP  being   the  largest  group),  which   interacts,  stabilizes  or  helps  a  non-­‐naNve  protein  to  acquire   its  na?ve  conforma?on  but  is  not  present  in  the  final  funcNonal  structure

Heat-­‐induced  HSP  up-­‐regulaNon  (e.g.  Hsp70)  thus  protects  cells  against  the  toxicity  of   subsequent   heaNng   (thermotolerance)   and   this   correlates   with   increased  refolding  capacity.

The  diverse  HSP  families,  their  members  and  mutual  interacNons  ensure  funcNonal  specificity  to  maintain  the  cellular  protein  homeostasis  (proteostasis)

nascent

Native stress

38

Page 77: Harm Kampinga - cssi-educational porto alegre - chaperone concepts

The   basic   chaperone   acNon   comprise   an   iteraNve   cycles   of   client   binding   to   and  release   from  HSPs   in  which  clients  may   fold  or  may  be  degraded   if   folding   is   not  successful  

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

HSP  belong  to  the  group  of  Molecular  Chaperones

Such   acNon   is   required   for   assisted   folding   of   nascent   proteins   and   for   protein  translocaNon   (consNtuNvely   expressed   HSP)   and   for   refolding   of   stress-­‐unfolded  proteins  (consNtuNve  and  heat-­‐inducible  HSP).

DefiniNon:  any  protein  (HSP  being   the  largest  group),  which   interacts,  stabilizes  or  helps  a  non-­‐naNve  protein  to  acquire   its  na?ve  conforma?on  but  is  not  present  in  the  final  funcNonal  structure

Heat-­‐induced  HSP  up-­‐regulaNon  (e.g.  Hsp70)  thus  protects  cells  against  the  toxicity  of   subsequent   heaNng   (thermotolerance)   and   this   correlates   with   increased  refolding  capacity.

The  diverse  HSP  families,  their  members  and  mutual  interacNons  ensure  funcNonal  specificity  to  maintain  the  cellular  protein  homeostasis  (proteostasis)

mutant

nascent

Native stress

38

Page 78: Harm Kampinga - cssi-educational porto alegre - chaperone concepts

So,  the  HSP  machines  may  not  be  enNrely  stupid  aBer  all

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

sense,  specify  and  direct  protein  quality  control  in  an  intricate  network  but  rather

39

Page 79: Harm Kampinga - cssi-educational porto alegre - chaperone concepts

So,  the  HSP  machines  may  not  be  enNrely  stupid  aBer  all

Cell  Stress  and  Chaperones:  basic  concepts  -­‐  Harm  H.  Kampinga

sense,  specify  and  direct  protein  quality  control  in  an  intricate  network  but  rather

39